Rroxscaffold_3G00240890
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0010263
Physical Location & Seq
Forward (+)
32768180 .. 32782361
14182 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00240890.1

Sequence Viewer

Length: 1419 bp
ATGGCAATTGCAGCAACGAGCAGGATGAGCCACGAAGAAGACGAGTCGAACAAGCAGAGCAATCATCATGATGAGGTTGATGATGAGCATGAGCATGACATGGTGATGCCGGGCTTTCGCTTCCACCCAACTGAAGAAGAACTGATAGAGTTTTACCTTCGCCGTAAGGTGGAGGGCAAGCGCTTCAATGTCGAACTGATTACTTTTCTCGACCTTTATCGCTATGACCCTTGGGAACTTCCAGCTATGGCCGCGATTGGAGAGAAGGAGTGGTTCTTTTATGTCCCGAGAGACAGAAAGTACCGGAACGGTGACAGGCCCAACCGTGTGACCACATCTGGATACTGGAAGGCAACTGGAGCCGATCGGATGATTCGAAGCGAGAACTTCCGGTCAATCGGATTGAAGAAAACCCTAGTTTTCTACTCTGGGAAAGCCCCCAAAGGCATTCGAACTAGCTGGATCATGAACGAGTATCGCTTGCCCCATCATGAAACTGAACGATATCAAAAGGGAGAAATATCCCTTTGCCGAGTTTACAAGAGACCCGGAGTGGAAGACCACCCGTCGCTGCCTCGTTCTCTGCCGTCATCCAGAGCCGCCGCTAATGCTAATAATGCATCCACATCAAGATCAGTACTGGCTCAGTCTTCCTCCTCGTCCACCTTAGACAAAAAGCAGCACAGCATTAACAGTAGTTTGATGGAAAAACTCCAAGCTAATTTTAACTTCAATGGAGGGTCGCCGTCACTTGGCCAATCTGTAGAACAACTTCATCATCATCAAGATCAGGTGGCTGCGGATCCCAAGATTAACGAAACGGAAGGAAGTAGCGGGAATTCGGATGTGACAAGCACGCTCGGCGTTGGCCTCCGTAGTAGTGCTCCTAATATTCCTCCAATTCATCTTCCATCATCGTCACTCGGACTACAACCTCATCACCATCACCATGGAGGAGTCCTACACCTCGATGATCAGGCCGAACAAGAGGGGATGTCGACATTCTTGCAGCAGCACCACCACCACTCAAAGCCACAATCAATGCTGTTCGCCGGATCTTCTGTTTCGTCCACGTCTAACCCGATTGATGATCTTCAAAGACTCTTGAATTACCAACAGCAGCAAGCAGTGTCCAATATTGCCAATCAACAACAAGCTCTACATGTACAACAATACTATGATGCTCATAATCATAATCACCACCACCACCACCAAGTACCTAGCAACGTGGTTAACCATTTCTCCAGTCCTTTCCCATTGGTACCTCCTCCATCGTCGCAGTCTCAGCTCTCCCCCAACGGACTTCCAATAACTGCTTTCTCCGACCGTCTTTGGGACTGGAATCCGATCTCAGAACCAAACAGGGCGCCCGATCAGTACAACACCAATCCATTCAAGTCTCTCCTCCACCAAATTTAA

Protein Analysis

472

Amino Acids

53.49

Weight (kDa)

6.57

Isoelectric Point (pI)

60.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 37 - 161 7.3e-45 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1261
AccB1I GGYRCC 2 cut(s) 1261, 1366
AccI GTMKAC 1 cut(s) 998
AccII CGCG 1 cut(s) 254
AciI CCGC 5 cut(s) 252, 600, 603, 800, 834
AclWI GGATC 4 cut(s) 470, 797, 810, 1063
AcoI YGGCCR 2 cut(s) 249, 754
AcsI RAATTY 2 cut(s) 838, 1413
AcuI CTGAAG 1 cut(s) 153
AcyI GRCGYC 1 cut(s) 1367
AfaI GTAC 6 cut(s) 302, 639, 1167, 1218, 1263, 1379
AfeI AGCGCT 1 cut(s) 182
AfiI CCNNNNNNNGG 3 cut(s) 169, 752, 1333
AflIII ACRYGT 1 cut(s) 1162
AgsI TTSAA 6 cut(s) 187, 406, 733, 1097, 1108, 1396
AhdI GACNNNNNGTC 1 cut(s) 565
AjiI CACGTC 1 cut(s) 1074
AluBI AGCT 5 cut(s) 245, 459, 719, 1157, 1288
AluI AGCT 5 cut(s) 245, 459, 719, 1157, 1288
Alw21I GWGCWC 1 cut(s) 886
Alw26I GTCTC 4 cut(s) 285, 538, 1287, 1404
AlwI GGATC 4 cut(s) 470, 797, 810, 1063
Ama87I CYCGRG 1 cut(s) 286
Aor51HI AGCGCT 1 cut(s) 182
AoxI GGCC 5 cut(s) 249, 317, 754, 868, 978
ApeKI GCWGC 7 cut(s) 11, 571, 679, 797, 1009, 1012, 1120
ApoI RAATTY 2 cut(s) 838, 1413
Asp700I GAANNNNTTC 1 cut(s) 771
Asp718I GGTACC 1 cut(s) 1261
AspLEI GCGC 2 cut(s) 183, 1369
AspS9I GGNCC 1 cut(s) 318
AsuC2I CCSGG 2 cut(s) 111, 549
AsuHPI GGTGA 5 cut(s) 115, 323, 932, 938, 1190
AsuII TTCGAA 2 cut(s) 376, 451
AvaI CYCGRG 1 cut(s) 286
BalI TGGCCA 1 cut(s) 756
BamHI GGATCC 1 cut(s) 802
BanI GGYRCC 2 cut(s) 1261, 1366
BarI GAAGNNNNNNTAC 2 cut(s) 756, 788
BbsI GAAGAC 3 cut(s) 45, 564, 642
Bbv12I GWGCWC 1 cut(s) 886
BbvI GCAGC 7 cut(s) 23, 558, 691, 784, 1021, 1024, 1132
BccI CCATC 5 cut(s) 495, 697, 919, 951, 1279
BceAI ACGGC 3 cut(s) 147, 571, 730
BcgI CGANNNNNNTGC 2 cut(s) 988, 1022
BciVI GTATCC 1 cut(s) 335
BclI TGATCA 1 cut(s) 973
BcnI CCSGG 2 cut(s) 111, 549
BcoDI GTCTC 4 cut(s) 285, 538, 1287, 1404
BfaI CTAG 3 cut(s) 416, 456, 1221
BfmI CTRYAG 1 cut(s) 762
BfoI RGCGCY 2 cut(s) 184, 1370
BfuI GTATCC 1 cut(s) 335
BmcAI AGTACT 1 cut(s) 639
Bme1390I CCNGG 2 cut(s) 111, 549
BmeRI GACNNNNNGTC 1 cut(s) 565
BmeT110I CYCGRG 1 cut(s) 286
BmgBI CACGTC 1 cut(s) 1074
BmgT120I GGNCC 1 cut(s) 318
BmiI GGNNCC 4 cut(s) 361, 804, 1263, 1368
BmrFI CCNGG 2 cut(s) 111, 549
BmsI GCATC 3 cut(s) 96, 629, 1171
BpiI GAAGAC 3 cut(s) 45, 564, 642
BpmI CTGGAG 2 cut(s) 378, 1228
Bpu14I TTCGAA 2 cut(s) 376, 451
BpuMI CCSGG 2 cut(s) 111, 549
BsaHI GRCGYC 1 cut(s) 1367
BsaI GGTCTC 1 cut(s) 538
BsaJI CCNNGG 2 cut(s) 230, 949
BsaWI WCCGGW 2 cut(s) 303, 390
BsaXI ACNNNNNCTCC 2 cut(s) 1226, 1256
Bsc4I CCNNNNNNNGG 3 cut(s) 169, 752, 1333
Bse1I ACTGG 5 cut(s) 350, 361, 645, 1245, 1343
BseDI CCNNGG 2 cut(s) 230, 949
BseGI GGATG 6 cut(s) 30, 375, 590, 620, 850, 999
BseLI CCNNNNNNNGG 3 cut(s) 169, 752, 1333
BseMII CTCAG 3 cut(s) 659, 1298, 1365
BseNI ACTGG 5 cut(s) 350, 361, 645, 1245, 1343
BseRI GAGGAG 4 cut(s) 646, 969, 1257, 1394
BseXI GCAGC 7 cut(s) 23, 558, 691, 784, 1021, 1024, 1132
Bsh1236I CGCG 1 cut(s) 254
Bsh1285I CGRYCG 2 cut(s) 367, 1327
BshFI GGCC 5 cut(s) 251, 319, 756, 870, 980
BshNI GGYRCC 2 cut(s) 1261, 1366
BsiEI CGRYCG 2 cut(s) 367, 1327
BsiHKAI GWGCWC 1 cut(s) 886
BsiHKCI CYCGRG 1 cut(s) 286
BsiSI CCGG 5 cut(s) 110, 304, 391, 549, 1053
BslFI GGGAC 2 cut(s) 269, 1349
BslI CCNNNNNNNGG 3 cut(s) 169, 752, 1333
BsmAI GTCTC 4 cut(s) 285, 538, 1287, 1404
BsmFI GGGAC 2 cut(s) 269, 1349
BsmI GAATGC 1 cut(s) 447
BsnI GGCC 5 cut(s) 251, 319, 756, 870, 980
Bso31I GGTCTC 1 cut(s) 538
BsoBI CYCGRG 1 cut(s) 286
Bsp119I TTCGAA 2 cut(s) 376, 451
Bsp1286I GDGCHC 1 cut(s) 886
Bsp1407I TGTACA 1 cut(s) 1165
Bsp19I CCATGG 1 cut(s) 949
BspACI CCGC 5 cut(s) 252, 600, 603, 800, 834
BspANI GGCC 5 cut(s) 251, 319, 756, 870, 980
BspCNI CTCAG 3 cut(s) 658, 1297, 1364
BspFNI CGCG 1 cut(s) 254
BspHI TCATGA 3 cut(s) 67, 465, 490
BspLI GGNNCC 4 cut(s) 361, 804, 1263, 1368
BspPI GGATC 4 cut(s) 470, 797, 810, 1063
BspT104I TTCGAA 2 cut(s) 376, 451
BspT107I GGYRCC 2 cut(s) 1261, 1366
BspTNI GGTCTC 1 cut(s) 538
BsrGI TGTACA 1 cut(s) 1165
BsrI ACTGG 5 cut(s) 350, 361, 645, 1245, 1343
BssECI CCNNGG 2 cut(s) 230, 949
BssNI GRCGYC 1 cut(s) 1367
BssT1I CCWWGG 2 cut(s) 230, 949
Bst4CI ACNGT 4 cut(s) 311, 326, 695, 1328
BstACI GRCGYC 1 cut(s) 1367
BstAUI TGTACA 1 cut(s) 1165
BstBI TTCGAA 2 cut(s) 376, 451
BstC8I GCNNGC 4 cut(s) 179, 482, 857, 1125
BstDEI CTNAG 4 cut(s) 645, 667, 1284, 1351
BstDSI CCRYGG 1 cut(s) 949
BstF5I GGATG 6 cut(s) 30, 375, 590, 620, 850, 999
BstFNI CGCG 1 cut(s) 254
BstH2I RGCGCY 2 cut(s) 184, 1370
BstHHI GCGC 2 cut(s) 183, 1369
BstMAI GTCTC 4 cut(s) 285, 538, 1287, 1404
BstMCI CGRYCG 2 cut(s) 367, 1327
BstMWI GCNNNNNNNGC 8 cut(s) 11, 27, 251, 359, 608, 617, 861, 1285
BstNSI RCATGY 1 cut(s) 1166
BstSCI CCNGG 2 cut(s) 109, 547
BstSFI CTRYAG 1 cut(s) 762
BstUI CGCG 1 cut(s) 254
BstV1I GCAGC 7 cut(s) 23, 558, 691, 784, 1021, 1024, 1132
BstV2I GAAGAC 3 cut(s) 45, 564, 642
BstX2I RGATCY 2 cut(s) 802, 1055
BstXI CCANNNNNNTGG 1 cut(s) 950
BstYI RGATCY 2 cut(s) 802, 1055
BsuI GTATCC 1 cut(s) 335
BsuRI GGCC 5 cut(s) 251, 319, 756, 870, 980
BtgI CCRYGG 1 cut(s) 949
BtrI CACGTC 1 cut(s) 1074
BtsCI GGATG 6 cut(s) 30, 375, 590, 620, 850, 999
BtsI GCAGTG 1 cut(s) 1134
BtsIMutI CAGTG 1 cut(s) 1134
Cac8I GCNNGC 4 cut(s) 179, 482, 857, 1125
CciI TCATGA 3 cut(s) 67, 465, 490
CfoI GCGC 2 cut(s) 183, 1369
Cfr13I GGNCC 1 cut(s) 318
Csp6I GTAC 6 cut(s) 301, 638, 1166, 1217, 1262, 1378
CviAII CATG 8 cut(s) 68, 89, 95, 100, 466, 491, 950, 1163
CviQI GTAC 6 cut(s) 301, 638, 1166, 1217, 1262, 1378
DdeI CTNAG 4 cut(s) 645, 667, 1284, 1351
DinI GGCGCC 1 cut(s) 1368
DriI GACNNNNNGTC 1 cut(s) 565
EaeI YGGCCR 2 cut(s) 249, 754
Eam1105I GACNNNNNGTC 1 cut(s) 565
Eco130I CCWWGG 2 cut(s) 230, 949
Eco31I GGTCTC 1 cut(s) 538
Eco32I GATATC 1 cut(s) 506
Eco47III AGCGCT 1 cut(s) 182
Eco57I CTGAAG 1 cut(s) 153
Eco88I CYCGRG 1 cut(s) 286
EcoRI GAATTC 1 cut(s) 838
EcoRV GATATC 1 cut(s) 506
EcoT14I CCWWGG 2 cut(s) 230, 949
EcoT22I ATGCAT 1 cut(s) 622
EgeI GGCGCC 1 cut(s) 1368
EheI GGCGCC 1 cut(s) 1368
ErhI CCWWGG 2 cut(s) 230, 949
FaeI CATG 8 cut(s) 71, 92, 98, 103, 469, 494, 953, 1166
FaqI GGGAC 2 cut(s) 269, 1349
FatI CATG 8 cut(s) 67, 88, 94, 99, 465, 490, 949, 1162
FauI CCCGC 1 cut(s) 827
FbaI TGATCA 1 cut(s) 973
FblI GTMKAC 1 cut(s) 998
FokI GGATG 6 cut(s) 37, 382, 577, 607, 857, 1006
FspBI CTAG 3 cut(s) 416, 456, 1221
GlaI GCGC 2 cut(s) 182, 1368
GsuI CTGGAG 2 cut(s) 378, 1228
HaeII RGCGCY 2 cut(s) 184, 1370
HaeIII GGCC 5 cut(s) 251, 319, 756, 870, 980
HapII CCGG 5 cut(s) 110, 304, 391, 549, 1053
HhaI GCGC 2 cut(s) 183, 1369
Hin1I GRCGYC 1 cut(s) 1367
Hin1II CATG 8 cut(s) 71, 92, 98, 103, 469, 494, 953, 1166
Hin6I GCGC 2 cut(s) 181, 1367
HinP1I GCGC 2 cut(s) 181, 1367
HincII GTYRAC 2 cut(s) 999, 1234
HindII GTYRAC 2 cut(s) 999, 1234
HinfI GANTC 5 cut(s) 44, 373, 957, 1101, 1342
HpaI GTTAAC 1 cut(s) 1234
HpaII CCGG 5 cut(s) 110, 304, 391, 549, 1053
HphI GGTGA 5 cut(s) 115, 323, 932, 938, 1190
Hpy166II GTNNAC 5 cut(s) 538, 663, 999, 1071, 1234
Hpy188I TCNGA 7 cut(s) 369, 401, 844, 926, 1324, 1347, 1354
Hpy8I GTNNAC 5 cut(s) 538, 663, 999, 1071, 1234
Hpy99I CGWCG 2 cut(s) 571, 1279
HpyAV CCTTC 4 cut(s) 167, 259, 343, 818
HpyCH4III ACNGT 4 cut(s) 311, 326, 695, 1328
HpyCH4IV ACGT 2 cut(s) 1073, 1227
HpyCH4V TGCA 3 cut(s) 11, 620, 1009
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 27, 251, 359, 608, 617, 861, 1285
HpyF3I CTNAG 4 cut(s) 645, 667, 1284, 1351
HpySE526I ACGT 2 cut(s) 1073, 1227
Hsp92I GRCGYC 1 cut(s) 1367
Hsp92II CATG 8 cut(s) 71, 92, 98, 103, 469, 494, 953, 1166
HspAI GCGC 2 cut(s) 181, 1367
KasI GGCGCC 1 cut(s) 1366
KpnI GGTACC 1 cut(s) 1265
Ksp22I TGATCA 1 cut(s) 973
KspAI GTTAAC 1 cut(s) 1234
LmnI GCTCC 2 cut(s) 359, 889
Lsp1109I GCAGC 7 cut(s) 23, 558, 691, 784, 1021, 1024, 1132
LweI GCATC 3 cut(s) 96, 629, 1171
MaeI CTAG 3 cut(s) 416, 456, 1221
MaeII ACGT 2 cut(s) 1073, 1227
MaeIII GTNAC 5 cut(s) 311, 328, 747, 847, 918
MfeI CAATTG 1 cut(s) 6
MflI RGATCY 2 cut(s) 802, 1055
MhlI GDGCHC 1 cut(s) 886
MlsI TGGCCA 1 cut(s) 756
MluCI AATT 6 cut(s) 6, 721, 838, 900, 1108, 1413
MluNI TGGCCA 1 cut(s) 756
Mly113I GGCGCC 1 cut(s) 1367
MlyI GAGTC 3 cut(s) 53, 966, 1095
MmeI TCCRAC 1 cut(s) 1347
Mox20I TGGCCA 1 cut(s) 756
Mph1103I ATGCAT 1 cut(s) 622
MroXI GAANNNNTTC 1 cut(s) 771
MscI TGGCCA 1 cut(s) 756
MseI TTAA 5 cut(s) 690, 726, 813, 1233, 1417
MslI CAYNNNNRTG 5 cut(s) 69, 93, 104, 948, 969
Msp20I TGGCCA 1 cut(s) 756
MspI CCGG 5 cut(s) 110, 304, 391, 549, 1053
MspR9I CCNGG 2 cut(s) 111, 549
MunI CAATTG 1 cut(s) 6
Mva1269I GAATGC 1 cut(s) 447
MvnI CGCG 1 cut(s) 254
MwoI GCNNNNNNNGC 8 cut(s) 11, 27, 251, 359, 608, 617, 861, 1285
NarI GGCGCC 1 cut(s) 1367
NciI CCSGG 2 cut(s) 111, 549
NcoI CCATGG 1 cut(s) 949
NlaIII CATG 8 cut(s) 71, 92, 98, 103, 469, 494, 953, 1166
NlaIV GGNNCC 4 cut(s) 361, 804, 1263, 1368
NmeAIII GCCGAG 2 cut(s) 557, 840
NmuCI GTSAC 5 cut(s) 311, 328, 747, 847, 918
NsiI ATGCAT 1 cut(s) 622
NspI RCATGY 1 cut(s) 1166
NspV TTCGAA 2 cut(s) 376, 451
PagI TCATGA 3 cut(s) 67, 465, 490
PciI ACATGT 1 cut(s) 1162
PcsI WCGNNNNNNNCGW 3 cut(s) 39, 373, 1079
PctI GAATGC 1 cut(s) 447
PdmI GAANNNNTTC 1 cut(s) 771
PfeI GAWTC 2 cut(s) 373, 1342
Ple19I CGATCG 1 cut(s) 367
PleI GAGTC 3 cut(s) 52, 965, 1095
PluTI GGCGCC 1 cut(s) 1370
PpsI GAGTC 3 cut(s) 52, 965, 1095
PscI ACATGT 1 cut(s) 1162
PspN4I GGNNCC 4 cut(s) 361, 804, 1263, 1368
PspPI GGNCC 1 cut(s) 318
PsuI RGATCY 2 cut(s) 802, 1055
PvuI CGATCG 1 cut(s) 367
RsaI GTAC 6 cut(s) 302, 639, 1167, 1218, 1263, 1379
RsaNI GTAC 6 cut(s) 301, 638, 1166, 1217, 1262, 1378
RseI CAYNNNNRTG 5 cut(s) 69, 93, 104, 948, 969
SalI GTCGAC 1 cut(s) 997
SaqAI TTAA 5 cut(s) 690, 726, 813, 1233, 1417
Sau96I GGNCC 1 cut(s) 318
ScaI AGTACT 1 cut(s) 639
SchI GAGTC 3 cut(s) 53, 966, 1095
ScrFI CCNGG 2 cut(s) 111, 549
SduI GDGCHC 1 cut(s) 886
SfaNI GCATC 3 cut(s) 96, 629, 1171
SfcI CTRYAG 1 cut(s) 762
SfoI GGCGCC 1 cut(s) 1368
SfuI TTCGAA 2 cut(s) 376, 451
SmiMI CAYNNNNRTG 5 cut(s) 69, 93, 104, 948, 969
Sse9I AATT 6 cut(s) 6, 721, 838, 900, 1108, 1413
SsiI CCGC 5 cut(s) 252, 600, 603, 800, 834
SspDI GGCGCC 1 cut(s) 1366
SspI AATATT 2 cut(s) 892, 1138
SspMI CTAG 3 cut(s) 416, 456, 1221
StyD4I CCNGG 2 cut(s) 109, 547
StyI CCWWGG 2 cut(s) 230, 949
TaaI ACNGT 4 cut(s) 311, 326, 695, 1328
TaiI ACGT 2 cut(s) 1076, 1230
TaqI TCGA 7 cut(s) 47, 192, 210, 376, 451, 969, 998
TasI AATT 6 cut(s) 6, 721, 838, 900, 1108, 1413
TatI WGTACW 3 cut(s) 637, 1165, 1377
TauI GCSGC 3 cut(s) 254, 602, 605
TfiI GAWTC 2 cut(s) 373, 1342
Tru1I TTAA 5 cut(s) 690, 726, 813, 1233, 1417
Tru9I TTAA 5 cut(s) 690, 726, 813, 1233, 1417
TscAI CASTG 1 cut(s) 1134
TseFI GTSAC 5 cut(s) 311, 328, 747, 847, 918
TseI GCWGC 7 cut(s) 11, 571, 679, 797, 1009, 1012, 1120
Tsp45I GTSAC 5 cut(s) 311, 328, 747, 847, 918
TspDTI ATGAA 4 cut(s) 482, 507, 764, 893
TspGWI ACGGA 3 cut(s) 836, 863, 1314
TspRI CASTG 1 cut(s) 1134
XapI RAATTY 2 cut(s) 838, 1413
XceI RCATGY 1 cut(s) 1166
XmiI GTMKAC 1 cut(s) 998
XmnI GAANNNNTTC 1 cut(s) 771
XspI CTAG 3 cut(s) 416, 456, 1221
ZrmI AGTACT 1 cut(s) 639
Zsp2I ATGCAT 1 cut(s) 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.