Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0010263

Physical Location & Seq

Genomic Coordinates Reverse (-)

21083876 .. 21085558

Gene Structure 1683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g21660.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGCCCAATCTAGTTGCAGAAACAACAACAACCTCATCATCATCAACAATGAGCCACGACGACTCCAACAAGGCCGACCATGAGCATGAGCATGATGAGTATGTTGATGAGCATGAGCACGACATGGTGATGCCGGGCTTTCGCTTCCACCCTACTGAGGAGGAACTTGTAGAGTTCTACCTTCGCCGTAAGGTTGAGGGCAAGCGCTTCAATGTTGAACTCATTACTTTTCTCGATCTTTATCGCTATGACCCTTGGGAACTTCCAGCTATGGCAGCAATTGGGGAGAAGGAATGGTTCTTTTATGTGCCAAGAGACCGCAAGTACCGCAACGGCGATAGGCCAAACCGGGTAACTACTTCTGGGTATTGGAAGGCAACTGGAGCCGACCGCATGATTCGAAGCGAAAACTTCCGCTCAATCGGCCTCAAGAAAACCCTAGTCTTTTACTCCGGGAAAGCTCCCAAAGGCATTCGAACTAGTTGGATCATGAACGAATATCGCTTGCCGCATCATGAAACTGAACGATATCAAAAGGGAGAAATATCACTATGCCGAGTATACAAGAGAGCCGGAGTTGAAGACCACCCATCACTCCCTCGTTGTCTCCCAGCATCCAGGGCATCCACATCTAGATCATCAGTACTAGTGGCTCAATCGACGATCAGGTCAGACAATAAAAAGCAGCACACCAATAATATCAACACAGTTGATAGTGTGATTGAAAAACTCCAAGCTTTTAATGAAGGCCAATCGCAGCAGATTCATCATGATCGATCTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

262

Amino Acids

30.49

Weight (kDa)

7.84

Isoelectric Point (pI)

52.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010263)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02450 AT2G02450
fragaria_vesca	FvH4_5g27330
malus_domestica	MD08G1250000.v1.1 MD15G1444700.v1.1
prunus_persica	Prupe.1G587100_v2.0.a1 Prupe.1G587100_v2.0.a1 Prupe.1G587100_v2.0.a1 Prupe.1G587100_v2.0.a1
pyrus_communis	pycom08g21660 pycom15g39180
rosa_chinensis	RchiOBHm_Chr7g0218501
rosa_laevigata	RLG00000002365
rosa_multiflora	Rmu_sc0001301.1_g000047
rosa_roxburghii	Rroxscaffold_3G00240890
rosa_rugosa	Rorug07G0177700
rosa_samantha	Rh7AG319100 Rh7BG311000 Rh7CG335900 Rh7DG318300
rosa_wichuraiana	Rw7G027170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	667
AccBSI	CCGCTC	1 cut(s)	417
AccI	GTMKAC	1 cut(s)	561
AciI	CCGC	5 cut(s)	319, 328, 391, 415, 509
AclWI	GGATC	1 cut(s)	494
AfaI	GTAC	2 cut(s)	326, 645
AfeI	AGCGCT	1 cut(s)	206
AfiI	CCNNNNNNNGG	1 cut(s)	157
AgsI	TTSAA	4 cut(s)	211, 218, 581, 725
AhlI	ACTAGT	2 cut(s)	479, 646
AjnI	CCWGG	1 cut(s)	617
AluBI	AGCT	3 cut(s)	269, 461, 737
AluI	AGCT	3 cut(s)	269, 461, 737
Alw21I	GWGCWC	1 cut(s)	120
Alw26I	GTCTC	2 cut(s)	309, 611
AlwI	GGATC	1 cut(s)	494
Aor51HI	AGCGCT	1 cut(s)	206
AoxI	GGCC	4 cut(s)	72, 341, 424, 748
ApeKI	GCWGC	3 cut(s)	275, 685, 757
AspLEI	GCGC	1 cut(s)	207
AsuC2I	CCSGG	3 cut(s)	135, 350, 454
AsuHPI	GGTGA	1 cut(s)	139
AsuII	TTCGAA	2 cut(s)	400, 475
BbsI	GAAGAC	1 cut(s)	588
Bbv12I	GWGCWC	1 cut(s)	120
BbvI	GCAGC	3 cut(s)	287, 697, 769
BccI	CCATC	1 cut(s)	598
BceAI	ACGGC	2 cut(s)	171, 349
BciT130I	CCWGG	1 cut(s)	619
BcnI	CCSGG	3 cut(s)	135, 350, 454
BcoDI	GTCTC	2 cut(s)	309, 611
BcuI	ACTAGT	2 cut(s)	479, 646
BfaI	CTAG	6 cut(s)	11, 440, 480, 633, 647, 780
BfoI	RGCGCY	1 cut(s)	208
BisI	GCNGC	4 cut(s)	276, 509, 686, 758
BlsI	GCNGC	4 cut(s)	277, 510, 687, 759
BmcAI	AGTACT	1 cut(s)	645
Bme1390I	CCNGG	4 cut(s)	135, 350, 454, 619
BmiI	GGNNCC	1 cut(s)	385
BmrFI	CCNGG	4 cut(s)	135, 350, 454, 619
BmsI	GCATC	4 cut(s)	120, 520, 623, 632
BpiI	GAAGAC	1 cut(s)	588
BpmI	CTGGAG	1 cut(s)	402
Bpu14I	TTCGAA	2 cut(s)	400, 475
BpuEI	CTTGAG	1 cut(s)	413
BpuMI	CCSGG	3 cut(s)	135, 350, 454
Bsa29I	ATCGAT	1 cut(s)	775
BsaBI	GATNNNNATC	1 cut(s)	240
BsaI	GGTCTC	1 cut(s)	309
BsaJI	CCNNGG	2 cut(s)	254, 618
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bsc4I	CCNNNNNNNGG	1 cut(s)	157
Bse1I	ACTGG	1 cut(s)	385
Bse8I	GATNNNNATC	1 cut(s)	240
BseBI	CCWGG	1 cut(s)	619
BseCI	ATCGAT	1 cut(s)	775
BseDI	CCNNGG	2 cut(s)	254, 618
BseGI	GGATG	2 cut(s)	614, 623
BseJI	GATNNNNATC	1 cut(s)	240
BseLI	CCNNNNNNNGG	1 cut(s)	157
BseMII	CTCAG	1 cut(s)	147
BseNI	ACTGG	1 cut(s)	385
BseRI	GAGGAG	1 cut(s)	173
BseXI	GCAGC	3 cut(s)	287, 697, 769
BseYI	CCCAGC	1 cut(s)	610
Bsh1285I	CGRYCG	1 cut(s)	391
BshFI	GGCC	4 cut(s)	74, 343, 426, 750
BshVI	ATCGAT	1 cut(s)	775
BsiEI	CGRYCG	1 cut(s)	391
BsiHKAI	GWGCWC	1 cut(s)	120
BsiSI	CCGG	4 cut(s)	134, 349, 453, 573
BslI	CCNNNNNNNGG	1 cut(s)	157
BsmAI	GTCTC	2 cut(s)	309, 611
BsmI	GAATGC	1 cut(s)	471
BsnI	GGCC	4 cut(s)	74, 343, 426, 750
Bso31I	GGTCTC	1 cut(s)	309
Bsp119I	TTCGAA	2 cut(s)	400, 475
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp143I	GATC	6 cut(s)	235, 486, 635, 663, 772, 776
BspACI	CCGC	5 cut(s)	319, 328, 391, 415, 509
BspANI	GGCC	4 cut(s)	74, 343, 426, 750
BspCNI	CTCAG	1 cut(s)	148
BspDI	ATCGAT	1 cut(s)	775
BspHI	TCATGA	3 cut(s)	489, 514, 769
BspLI	GGNNCC	1 cut(s)	385
BspPI	GGATC	1 cut(s)	494
BspT104I	TTCGAA	2 cut(s)	400, 475
BspTNI	GGTCTC	1 cut(s)	309
BsrBI	CCGCTC	1 cut(s)	417
BsrI	ACTGG	1 cut(s)	385
BssECI	CCNNGG	2 cut(s)	254, 618
BssMI	GATC	6 cut(s)	235, 486, 635, 663, 772, 776
BssNAI	GTATAC	1 cut(s)	562
BssT1I	CCWWGG	1 cut(s)	254
Bst1107I	GTATAC	1 cut(s)	562
Bst2UI	CCWGG	1 cut(s)	619
Bst4CI	ACNGT	1 cut(s)	709
BstBI	TTCGAA	2 cut(s)	400, 475
BstC8I	GCNNGC	2 cut(s)	203, 506
BstDEI	CTNAG	1 cut(s)	156
BstF5I	GGATG	2 cut(s)	614, 623
BstH2I	RGCGCY	1 cut(s)	208
BstHHI	GCGC	1 cut(s)	207
BstKTI	GATC	6 cut(s)	238, 489, 638, 666, 775, 779
BstMAI	GTCTC	2 cut(s)	309, 611
BstMBI	GATC	6 cut(s)	235, 486, 635, 663, 772, 776
BstMCI	CGRYCG	1 cut(s)	391
BstMWI	GCNNNNNNNGC	5 cut(s)	275, 327, 383, 423, 620
BstNI	CCWGG	1 cut(s)	619
BstSCI	CCNGG	4 cut(s)	133, 348, 452, 617
BstV1I	GCAGC	3 cut(s)	287, 697, 769
BstV2I	GAAGAC	1 cut(s)	588
BstZ17I	GTATAC	1 cut(s)	562
Bsu15I	ATCGAT	1 cut(s)	775
BsuRI	GGCC	4 cut(s)	74, 343, 426, 750
BsuTUI	ATCGAT	1 cut(s)	775
BtsCI	GGATG	2 cut(s)	614, 623
Cac8I	GCNNGC	2 cut(s)	203, 506
CciI	TCATGA	3 cut(s)	489, 514, 769
CfoI	GCGC	1 cut(s)	207
ClaI	ATCGAT	1 cut(s)	775
Csp6I	GTAC	2 cut(s)	325, 644
CviAII	CATG	9 cut(s)	80, 86, 92, 113, 124, 394, 490, 515, 770
CviQI	GTAC	2 cut(s)	325, 644
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	6 cut(s)	237, 488, 637, 665, 774, 778
DpnII	GATC	6 cut(s)	235, 486, 635, 663, 772, 776
DrdI	GACNNNNNNGTC	1 cut(s)	667
DseDI	GACNNNNNNGTC	1 cut(s)	667
Eco130I	CCWWGG	1 cut(s)	254
Eco31I	GGTCTC	1 cut(s)	309
Eco32I	GATATC	1 cut(s)	530
Eco47III	AGCGCT	1 cut(s)	206
EcoRII	CCWGG	1 cut(s)	617
EcoRV	GATATC	1 cut(s)	530
EcoT14I	CCWWGG	1 cut(s)	254
ErhI	CCWWGG	1 cut(s)	254
FaeI	CATG	9 cut(s)	83, 89, 95, 116, 127, 397, 493, 518, 773
FatI	CATG	9 cut(s)	79, 85, 91, 112, 123, 393, 489, 514, 769
FblI	GTMKAC	1 cut(s)	561
Fnu4HI	GCNGC	4 cut(s)	276, 509, 686, 758
FokI	GGATG	2 cut(s)	601, 610
Fsp4HI	GCNGC	4 cut(s)	276, 509, 686, 758
FspBI	CTAG	6 cut(s)	11, 440, 480, 633, 647, 780
GlaI	GCGC	1 cut(s)	206
GluI	GCNGC	4 cut(s)	276, 509, 686, 758
GsaI	CCCAGC	1 cut(s)	614
GsuI	CTGGAG	1 cut(s)	402
HaeII	RGCGCY	1 cut(s)	208
HaeIII	GGCC	4 cut(s)	74, 343, 426, 750
HapII	CCGG	4 cut(s)	134, 349, 453, 573
HhaI	GCGC	1 cut(s)	207
Hin1II	CATG	9 cut(s)	83, 89, 95, 116, 127, 397, 493, 518, 773
Hin6I	GCGC	1 cut(s)	205
HinP1I	GCGC	1 cut(s)	205
HindIII	AAGCTT	1 cut(s)	735
HinfI	GANTC	3 cut(s)	62, 397, 763
HpaII	CCGG	4 cut(s)	134, 349, 453, 573
HphI	GGTGA	1 cut(s)	139
Hpy166II	GTNNAC	1 cut(s)	562
Hpy188I	TCNGA	1 cut(s)	673
Hpy188III	TCNNGA	6 cut(s)	233, 430, 490, 515, 633, 770
Hpy8I	GTNNAC	1 cut(s)	562
Hpy99I	CGWCG	2 cut(s)	62, 664
HpyAV	CCTTC	4 cut(s)	191, 283, 367, 740
HpyCH4III	ACNGT	1 cut(s)	709
HpyCH4V	TGCA	1 cut(s)	17
HpyF10VI	GCNNNNNNNGC	5 cut(s)	275, 327, 383, 423, 620
HpyF3I	CTNAG	1 cut(s)	156
Hsp92II	CATG	9 cut(s)	83, 89, 95, 116, 127, 397, 493, 518, 773
HspAI	GCGC	1 cut(s)	205
Kzo9I	GATC	6 cut(s)	235, 486, 635, 663, 772, 776
LmnI	GCTCC	2 cut(s)	383, 466
Lsp1109I	GCAGC	3 cut(s)	287, 697, 769
LweI	GCATC	4 cut(s)	120, 520, 623, 632
MaeI	CTAG	6 cut(s)	11, 440, 480, 633, 647, 780
MaeIII	GTNAC	1 cut(s)	352
MalI	GATC	6 cut(s)	237, 488, 637, 665, 774, 778
MbiI	CCGCTC	1 cut(s)	417
MboI	GATC	6 cut(s)	235, 486, 635, 663, 772, 776
MboII	GAAGA	1 cut(s)	593
MfeI	CAATTG	1 cut(s)	279
MhlI	GDGCHC	1 cut(s)	120
MluCI	AATT	1 cut(s)	279
MlyI	GAGTC	1 cut(s)	56
MmeI	TCCRAC	2 cut(s)	90, 464
MnlI	CCTC	6 cut(s)	43, 151, 154, 190, 437, 609
MseI	TTAA	1 cut(s)	741
MslI	CAYNNNNRTG	3 cut(s)	84, 90, 128
MspI	CCGG	4 cut(s)	134, 349, 453, 573
MspR9I	CCNGG	4 cut(s)	135, 350, 454, 619
MunI	CAATTG	1 cut(s)	279
Mva1269I	GAATGC	1 cut(s)	471
MvaI	CCWGG	1 cut(s)	619
MwoI	GCNNNNNNNGC	5 cut(s)	275, 327, 383, 423, 620
NciI	CCSGG	3 cut(s)	135, 350, 454
NdeII	GATC	6 cut(s)	235, 486, 635, 663, 772, 776
NlaIII	CATG	9 cut(s)	83, 89, 95, 116, 127, 397, 493, 518, 773
NlaIV	GGNNCC	1 cut(s)	385
NmeAIII	GCCGAG	1 cut(s)	581
NspV	TTCGAA	2 cut(s)	400, 475
PagI	TCATGA	3 cut(s)	489, 514, 769
PctI	GAATGC	1 cut(s)	471
PfeI	GAWTC	2 cut(s)	397, 763
PfoI	TCCNGGA	1 cut(s)	452
PkrI	GCNGC	4 cut(s)	277, 510, 687, 759
PleI	GAGTC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	56
Psp6I	CCWGG	1 cut(s)	617
PspFI	CCCAGC	1 cut(s)	610
PspGI	CCWGG	1 cut(s)	617
PspN4I	GGNNCC	1 cut(s)	385
RsaI	GTAC	2 cut(s)	326, 645
RsaNI	GTAC	2 cut(s)	325, 644
RseI	CAYNNNNRTG	3 cut(s)	84, 90, 128
SaqAI	TTAA	1 cut(s)	741
SatI	GCNGC	4 cut(s)	276, 509, 686, 758
Sau3AI	GATC	6 cut(s)	235, 486, 635, 663, 772, 776
ScaI	AGTACT	1 cut(s)	645
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	4 cut(s)	135, 350, 454, 619
SduI	GDGCHC	1 cut(s)	120
SetI	ASST	8 cut(s)	35, 183, 195, 271, 463, 671, 739, 785
SfaNI	GCATC	4 cut(s)	120, 520, 623, 632
SfuI	TTCGAA	2 cut(s)	400, 475
SmiMI	CAYNNNNRTG	3 cut(s)	84, 90, 128
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
SpeI	ACTAGT	2 cut(s)	479, 646
Sse9I	AATT	1 cut(s)	279
SsiI	CCGC	5 cut(s)	319, 328, 391, 415, 509
SspMI	CTAG	6 cut(s)	11, 440, 480, 633, 647, 780
StyD4I	CCNGG	4 cut(s)	133, 348, 452, 617
StyI	CCWWGG	1 cut(s)	254
TaaI	ACNGT	1 cut(s)	709
TaqI	TCGA	5 cut(s)	234, 400, 475, 659, 775
TasI	AATT	1 cut(s)	279
TatI	WGTACW	1 cut(s)	643
TauI	GCSGC	1 cut(s)	511
TfiI	GAWTC	2 cut(s)	397, 763
Tru1I	TTAA	1 cut(s)	741
Tru9I	TTAA	1 cut(s)	741
TseI	GCWGC	3 cut(s)	275, 685, 757
TspDTI	ATGAA	4 cut(s)	506, 531, 755, 759
XbaI	TCTAGA	1 cut(s)	632
XmiI	GTMKAC	1 cut(s)	561
XspI	CTAG	6 cut(s)	11, 440, 480, 633, 647, 780
ZrmI	AGTACT	1 cut(s)	645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.