Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010263

Physical Location & Seq

Genomic Coordinates Reverse (-)

47661676 .. 47664477

Gene Structure 2802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G587100.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1410 bp

ATGGCAATTGCAGCAACAACCTCATCATCATCAACTATGAGCGTTAACGACGAATCCAACAAGGCCGATCATGATCATGATCATCATCATGATGGTGGTGATGATGATGATGAGCATGAGCACGACATGGTGATGCCGGGCTTTCGCTTCCACCCTACTGAGGAAGAACTCGTAGAGTTCTACCTTCGCCGTAAGGTTGAGGGCAAGCGCTTCAACGTTGAGCTCATTACTTTTCTTGATCTTTATCGCTATGACCCTTGGGAGCTTCCAGCCATGGCAGCAATTGGAGAAAAGGAATGGTTCTTTTATGTGCCAAGAGACCGCAAGTACCGCAACGGGGATAGGCCTAACCGGGTGACTACTTCTGGGTACTGGAAGGCCACCGGAGCCGACCGCATGATCAGAAGCGAGAACTTCCGCTCAATTGGGCTCAAGAAAACCCTAGTCTTTTACTCTGGGAAAGCTCCCAAAGGCATCCGAACTAGCTGGATCATGAACGAGTATCGCTTGCCGCATCATGAAACTGAACGATATCAAAAGGGAGAAATATCTCTATGTCGAGTGTACAAGAGAGCTGGAGTTGAAGACCACCCATCGCTCCCTCGTTCCCTCCCGGCCTCCAAAGCATCCACATCGAGATCATCGGTACTTGTGGCTCCATCCACGACCATATCATCAGACAACAAAAAGCAGCACAATACTAGTACTAATATTAATAACAATAATATTAACACAGTTCATAGTATCATGGAGAAACTCCAAGCTTTTAATGAAGGCCAATCACAGCAATTTCATCAGGATCATGAGCATCAGGTGGATCAAAAGATGAGCGTCGAGCCTGAAGGAAGCAGCGGAAATTCAGATGTCACAACAGTTCTTGGGCTTTCCAAGCGTAACGCCTACCACCACAACAACATTGGACAAGCTCATCATCATCCACTTGATCAGGAAGAAGGGATGGCGGCCTTCTTGCACCAATCAAACTCAAAGCAAGCAGCGGCTAATTGCTTTTCACTGATTCCCAGTAGTACTAATTCATCTGCAACGCTCTTCACCGCGGGTTCTTCTTCTGTTTCGTCTTCCAATATGAATGCAATTGATGATCTTCATAGACTTTTGACCTACCAACATGTACAGCAGCAGGCTGCTGCAGCTTCCAGTCATCACCAACAACAACATGTACATCATCATGTGGTACAATACTATGATGATGCTCATCATCATCCCCAACCCAACAACCTTTTCTCCACTTTCCCTGCAGTAGCACCACATGTACAATCAGCTATACCGCCGCAGCAGCTGGCCCCCAACGCACTTCCAACTGCTTTCTCCGACCGCCTATGGGACTGGAATCCAATCTCAGATCCAAACCGGCCGGACTACAACAATCCATTCAAGGTTTTGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

470

Amino Acids

53.06

Weight (kDa)

6.37

Isoelectric Point (pI)

50.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010263)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02450 AT2G02450
fragaria_vesca	FvH4_5g27330
malus_domestica	MD08G1250000.v1.1 MD15G1444700.v1.1
prunus_persica	Prupe.1G587100_v2.0.a1 Prupe.1G587100_v2.0.a1 Prupe.1G587100_v2.0.a1 Prupe.1G587100_v2.0.a1
pyrus_communis	pycom08g21660 pycom15g39180
rosa_chinensis	RchiOBHm_Chr7g0218501
rosa_laevigata	RLG00000002365
rosa_multiflora	Rmu_sc0001301.1_g000047
rosa_roxburghii	Rroxscaffold_3G00240890
rosa_rugosa	Rorug07G0177700
rosa_samantha	Rh7AG319100 Rh7BG311000 Rh7CG335900 Rh7DG318300
rosa_wichuraiana	Rw7G027170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	420
AccII	CGCG	1 cut(s)	1058
AclI	AACGTT	1 cut(s)	216
AclWI	GGATC	4 cut(s)	497, 807, 825, 1358
AcoI	YGGCCR	1 cut(s)	1373
AcsI	RAATTY	1 cut(s)	856
AcuI	CTGAAG	1 cut(s)	861
AfeI	AGCGCT	1 cut(s)	209
AfiI	CCNNNNNNNGG	3 cut(s)	160, 337, 1342
AflIII	ACRYGT	3 cut(s)	1129, 1177, 1270
AgsI	TTSAA	3 cut(s)	214, 584, 1396
AhlI	ACTAGT	1 cut(s)	701
AjuI	GAANNNNNNNTTGG	2 cut(s)	1226, 1258
Alw21I	GWGCWC	2 cut(s)	123, 225
Alw26I	GTCTC	1 cut(s)	312
AlwI	GGATC	4 cut(s)	497, 807, 825, 1358
AlwNI	CAGNNNCTG	1 cut(s)	1300
Aor51HI	AGCGCT	1 cut(s)	209
AoxI	GGCC	8 cut(s)	63, 344, 378, 615, 775, 963, 1302, 1373
ApoI	RAATTY	1 cut(s)	856
AseI	ATTAAT	1 cut(s)	714
AspLEI	GCGC	1 cut(s)	210
AspS9I	GGNCC	1 cut(s)	1303
AsuC2I	CCSGG	3 cut(s)	138, 353, 614
AsuHPI	GGTGA	5 cut(s)	110, 142, 367, 1045, 1157
BanII	GRGCYC	2 cut(s)	225, 432
BbsI	GAAGAC	2 cut(s)	591, 1071
Bbv12I	GWGCWC	2 cut(s)	123, 225
BccI	CCATC	4 cut(s)	86, 601, 667, 952
BceAI	ACGGC	1 cut(s)	174
BcgI	CGANNNNNNTGC	2 cut(s)	615, 649
BclI	TGATCA	4 cut(s)	73, 79, 399, 943
BcnI	CCSGG	3 cut(s)	138, 353, 614
BcoDI	GTCTC	1 cut(s)	312
BcuI	ACTAGT	1 cut(s)	701
BfaI	CTAG	3 cut(s)	443, 483, 702
BfmI	CTRYAG	2 cut(s)	1149, 1257
BfoI	RGCGCY	1 cut(s)	211
BmcAI	AGTACT	2 cut(s)	706, 1030
Bme1390I	CCNGG	3 cut(s)	138, 353, 614
BmgT120I	GGNCC	1 cut(s)	1303
BmiI	GGNNCC	3 cut(s)	388, 657, 1305
BmrFI	CCNGG	3 cut(s)	138, 353, 614
BmrI	ACTGGG	1 cut(s)	1017
BmsI	GCATC	6 cut(s)	123, 483, 523, 635, 817, 1201
BmuI	ACTGGG	1 cut(s)	1017
BpiI	GAAGAC	2 cut(s)	591, 1071
BpmI	CTGGAG	1 cut(s)	597
BpuEI	CTTGAG	1 cut(s)	416
BpuMI	CCSGG	3 cut(s)	138, 353, 614
BsaBI	GATNNNNATC	5 cut(s)	72, 78, 84, 243, 1215
BsaI	GGTCTC	1 cut(s)	312
BsaJI	CCNNGG	3 cut(s)	257, 273, 1056
BsaWI	WCCGGW	1 cut(s)	383
BsaXI	ACNNNNNCTCC	2 cut(s)	1229, 1259
Bsc4I	CCNNNNNNNGG	3 cut(s)	160, 337, 1342
Bse118I	RCCGGY	1 cut(s)	1371
Bse1I	ACTGG	4 cut(s)	377, 1023, 1158, 1352
Bse8I	GATNNNNATC	5 cut(s)	72, 78, 84, 243, 1215
BseDI	CCNNGG	3 cut(s)	257, 273, 1056
BseGI	GGATG	6 cut(s)	474, 626, 659, 934, 963, 1222
BseJI	GATNNNNATC	5 cut(s)	72, 78, 84, 243, 1215
BseLI	CCNNNNNNNGG	3 cut(s)	160, 337, 1342
BseMII	CTCAG	2 cut(s)	150, 1374
BseNI	ACTGG	4 cut(s)	377, 1023, 1158, 1352
BseX3I	CGGCCG	1 cut(s)	1373
Bsh1236I	CGCG	1 cut(s)	1058
Bsh1285I	CGRYCG	3 cut(s)	394, 1336, 1376
BshFI	GGCC	8 cut(s)	65, 346, 380, 617, 777, 965, 1304, 1375
BsiEI	CGRYCG	3 cut(s)	394, 1336, 1376
BsiHKAI	GWGCWC	2 cut(s)	123, 225
BsiSI	CCGG	6 cut(s)	137, 352, 384, 614, 1372, 1376
BslFI	GGGAC	1 cut(s)	1358
BslI	CCNNNNNNNGG	3 cut(s)	160, 337, 1342
BsmAI	GTCTC	1 cut(s)	312
BsmFI	GGGAC	1 cut(s)	1358
BsmI	GAATGC	1 cut(s)	1096
BsnI	GGCC	8 cut(s)	65, 346, 380, 617, 777, 965, 1304, 1375
Bso31I	GGTCTC	1 cut(s)	312
Bsp1286I	GDGCHC	3 cut(s)	123, 225, 432
Bsp1407I	TGTACA	4 cut(s)	564, 1132, 1180, 1273
Bsp19I	CCATGG	1 cut(s)	273
BspANI	GGCC	8 cut(s)	65, 346, 380, 617, 777, 965, 1304, 1375
BspCNI	CTCAG	2 cut(s)	151, 1373
BspFNI	CGCG	1 cut(s)	1058
BspHI	TCATGA	6 cut(s)	70, 76, 88, 492, 517, 802
BspLI	GGNNCC	3 cut(s)	388, 657, 1305
BspMAI	CTGCAG	2 cut(s)	1153, 1261
BspPI	GGATC	4 cut(s)	497, 807, 825, 1358
BspQI	GCTCTTC	1 cut(s)	1055
BspTNI	GGTCTC	1 cut(s)	312
BsrBI	CCGCTC	1 cut(s)	420
BsrFI	RCCGGY	1 cut(s)	1371
BsrGI	TGTACA	4 cut(s)	564, 1132, 1180, 1273
BsrI	ACTGG	4 cut(s)	377, 1023, 1158, 1352
BssAI	RCCGGY	1 cut(s)	1371
BssECI	CCNNGG	3 cut(s)	257, 273, 1056
BssT1I	CCWWGG	2 cut(s)	257, 273
Bst4CI	ACNGT	2 cut(s)	736, 874
Bst6I	CTCTTC	1 cut(s)	1055
BstAUI	TGTACA	4 cut(s)	564, 1132, 1180, 1273
BstC8I	GCNNGC	5 cut(s)	206, 509, 993, 1143, 1302
BstDEI	CTNAG	2 cut(s)	159, 1360
BstDSI	CCRYGG	2 cut(s)	273, 1056
BstF5I	GGATG	6 cut(s)	474, 626, 659, 934, 963, 1222
BstFNI	CGCG	1 cut(s)	1058
BstH2I	RGCGCY	1 cut(s)	211
BstHHI	GCGC	1 cut(s)	210
BstMAI	GTCTC	1 cut(s)	312
BstMCI	CGRYCG	3 cut(s)	394, 1336, 1376
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 278, 330, 386, 623, 889, 1151, 1297, 1310
BstNSI	RCATGY	3 cut(s)	1133, 1181, 1274
BstSCI	CCNGG	3 cut(s)	136, 351, 612
BstSFI	CTRYAG	2 cut(s)	1149, 1257
BstUI	CGCG	1 cut(s)	1058
BstV2I	GAAGAC	2 cut(s)	591, 1071
BstX2I	RGATCY	1 cut(s)	1363
BstYI	RGATCY	1 cut(s)	1363
BstZI	CGGCCG	1 cut(s)	1373
BsuRI	GGCC	8 cut(s)	65, 346, 380, 617, 777, 965, 1304, 1375
BtgI	CCRYGG	2 cut(s)	273, 1056
BtgZI	GCGATG	1 cut(s)	579
BtsCI	GGATG	6 cut(s)	474, 626, 659, 934, 963, 1222
BtsIMutI	CAGTG	1 cut(s)	1013
Cac8I	GCNNGC	5 cut(s)	206, 509, 993, 1143, 1302
CaiI	CAGNNNCTG	1 cut(s)	1300
CciI	TCATGA	6 cut(s)	70, 76, 88, 492, 517, 802
CfoI	GCGC	1 cut(s)	210
Cfr10I	RCCGGY	1 cut(s)	1371
Cfr13I	GGNCC	1 cut(s)	1303
Cfr42I	CCGCGG	1 cut(s)	1059
CseI	GACGC	1 cut(s)	820
DdeI	CTNAG	2 cut(s)	159, 1360
EaeI	YGGCCR	1 cut(s)	1373
EagI	CGGCCG	1 cut(s)	1373
Eam1104I	CTCTTC	1 cut(s)	1055
EarI	CTCTTC	1 cut(s)	1055
Ecl136II	GAGCTC	1 cut(s)	223
EclXI	CGGCCG	1 cut(s)	1373
Eco130I	CCWWGG	2 cut(s)	257, 273
Eco147I	AGGCCT	1 cut(s)	346
Eco24I	GRGCYC	2 cut(s)	225, 432
Eco31I	GGTCTC	1 cut(s)	312
Eco32I	GATATC	1 cut(s)	533
Eco47III	AGCGCT	1 cut(s)	209
Eco52I	CGGCCG	1 cut(s)	1373
Eco53kI	GAGCTC	1 cut(s)	223
Eco57I	CTGAAG	1 cut(s)	861
EcoICRI	GAGCTC	1 cut(s)	223
EcoRV	GATATC	1 cut(s)	533
EcoT14I	CCWWGG	2 cut(s)	257, 273
EcoT38I	GRGCYC	2 cut(s)	225, 432
ErhI	CCWWGG	2 cut(s)	257, 273
FaqI	GGGAC	1 cut(s)	1358
FauI	CCCGC	1 cut(s)	1051
FbaI	TGATCA	4 cut(s)	73, 79, 399, 943
FokI	GGATG	6 cut(s)	461, 613, 646, 921, 970, 1209
FriOI	GRGCYC	2 cut(s)	225, 432
FspBI	CTAG	3 cut(s)	443, 483, 702
GlaI	GCGC	1 cut(s)	209
GsuI	CTGGAG	1 cut(s)	597
HaeII	RGCGCY	1 cut(s)	211
HaeIII	GGCC	8 cut(s)	65, 346, 380, 617, 777, 965, 1304, 1375
HapII	CCGG	6 cut(s)	137, 352, 384, 614, 1372, 1376
HgaI	GACGC	1 cut(s)	820
HhaI	GCGC	1 cut(s)	210
Hin6I	GCGC	1 cut(s)	208
HinP1I	GCGC	1 cut(s)	208
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HindIII	AAGCTT	1 cut(s)	762
HinfI	GANTC	3 cut(s)	53, 1018, 1351
HpaI	GTTAAC	1 cut(s)	46
HpaII	CCGG	6 cut(s)	137, 352, 384, 614, 1372, 1376
HphI	GGTGA	5 cut(s)	110, 142, 367, 1045, 1157
Hpy166II	GTNNAC	2 cut(s)	46, 565
Hpy188I	TCNGA	6 cut(s)	404, 479, 679, 862, 1333, 1363
Hpy8I	GTNNAC	2 cut(s)	46, 565
Hpy99I	CGWCG	2 cut(s)	53, 836
HpyAV	CCTTC	6 cut(s)	194, 370, 767, 836, 947, 976
HpyCH4III	ACNGT	2 cut(s)	736, 874
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	6 cut(s)	11, 973, 1043, 1094, 1151, 1259
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 278, 330, 386, 623, 889, 1151, 1297, 1310
HpyF3I	CTNAG	2 cut(s)	159, 1360
HpySE526I	ACGT	1 cut(s)	216
HspAI	GCGC	1 cut(s)	208
Ksp22I	TGATCA	4 cut(s)	73, 79, 399, 943
KspAI	GTTAAC	1 cut(s)	46
KspI	CCGCGG	1 cut(s)	1059
LguI	GCTCTTC	1 cut(s)	1055
LmnI	GCTCC	5 cut(s)	262, 386, 469, 603, 661
LweI	GCATC	6 cut(s)	123, 483, 523, 635, 817, 1201
MaeI	CTAG	3 cut(s)	443, 483, 702
MaeII	ACGT	1 cut(s)	216
MaeIII	GTNAC	3 cut(s)	355, 865, 893
MbiI	CCGCTC	1 cut(s)	420
MboII	GAAGA	8 cut(s)	176, 596, 962, 1042, 1056, 1059, 1071, 1097
MfeI	CAATTG	4 cut(s)	6, 282, 423, 1095
MflI	RGATCY	1 cut(s)	1363
MhlI	GDGCHC	3 cut(s)	123, 225, 432
MluCI	AATT	8 cut(s)	6, 282, 423, 788, 856, 1003, 1033, 1095
MmeI	TCCRAC	3 cut(s)	81, 1343, 1356
MnlI	CCTC	6 cut(s)	31, 154, 193, 612, 620, 628
MseI	TTAA	5 cut(s)	45, 714, 729, 768, 1408
MslI	CAYNNNNRTG	6 cut(s)	75, 87, 90, 93, 131, 1188
MspA1I	CMGCKG	4 cut(s)	852, 998, 1058, 1300
MspI	CCGG	6 cut(s)	137, 352, 384, 614, 1372, 1376
MspR9I	CCNGG	3 cut(s)	138, 353, 614
MunI	CAATTG	4 cut(s)	6, 282, 423, 1095
Mva1269I	GAATGC	1 cut(s)	1096
MvnI	CGCG	1 cut(s)	1058
MwoI	GCNNNNNNNGC	9 cut(s)	11, 278, 330, 386, 623, 889, 1151, 1297, 1310
NciI	CCSGG	3 cut(s)	138, 353, 614
NcoI	CCATGG	1 cut(s)	273
NlaIV	GGNNCC	3 cut(s)	388, 657, 1305
NmuCI	GTSAC	2 cut(s)	355, 865
NspI	RCATGY	3 cut(s)	1133, 1181, 1274
PagI	TCATGA	6 cut(s)	70, 76, 88, 492, 517, 802
PceI	AGGCCT	1 cut(s)	346
PciI	ACATGT	3 cut(s)	1129, 1177, 1270
PciSI	GCTCTTC	1 cut(s)	1055
PctI	GAATGC	1 cut(s)	1096
PfeI	GAWTC	3 cut(s)	53, 1018, 1351
PscI	ACATGT	3 cut(s)	1129, 1177, 1270
PshBI	ATTAAT	1 cut(s)	714
Psp124BI	GAGCTC	1 cut(s)	225
Psp1406I	AACGTT	1 cut(s)	216
PspN4I	GGNNCC	3 cut(s)	388, 657, 1305
PspPI	GGNCC	1 cut(s)	1303
PstI	CTGCAG	2 cut(s)	1153, 1261
PstNI	CAGNNNCTG	1 cut(s)	1300
PsuI	RGATCY	1 cut(s)	1363
PvuII	CAGCTG	1 cut(s)	1300
RseI	CAYNNNNRTG	6 cut(s)	75, 87, 90, 93, 131, 1188
SacI	GAGCTC	1 cut(s)	225
SacII	CCGCGG	1 cut(s)	1059
SapI	GCTCTTC	1 cut(s)	1055
SaqAI	TTAA	5 cut(s)	45, 714, 729, 768, 1408
Sau96I	GGNCC	1 cut(s)	1303
ScaI	AGTACT	2 cut(s)	706, 1030
ScrFI	CCNGG	3 cut(s)	138, 353, 614
SduI	GDGCHC	3 cut(s)	123, 225, 432
SfaNI	GCATC	6 cut(s)	123, 483, 523, 635, 817, 1201
SfcI	CTRYAG	2 cut(s)	1149, 1257
Sfr303I	CCGCGG	1 cut(s)	1059
SgrBI	CCGCGG	1 cut(s)	1059
SmiMI	CAYNNNNRTG	6 cut(s)	75, 87, 90, 93, 131, 1188
SmlI	CTYRAG	1 cut(s)	431
SmoI	CTYRAG	1 cut(s)	431
SpeI	ACTAGT	1 cut(s)	701
Sse9I	AATT	8 cut(s)	6, 282, 423, 788, 856, 1003, 1033, 1095
SseBI	AGGCCT	1 cut(s)	346
SspI	AATATT	2 cut(s)	712, 727
SspMI	CTAG	3 cut(s)	443, 483, 702
SstI	GAGCTC	1 cut(s)	225
StuI	AGGCCT	1 cut(s)	346
StyD4I	CCNGG	3 cut(s)	136, 351, 612
StyI	CCWWGG	2 cut(s)	257, 273
TaaI	ACNGT	2 cut(s)	736, 874
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	3 cut(s)	559, 635, 834
TasI	AATT	8 cut(s)	6, 282, 423, 788, 856, 1003, 1033, 1095
TatI	WGTACW	6 cut(s)	564, 704, 1028, 1132, 1180, 1273
TauI	GCSGC	4 cut(s)	514, 965, 1001, 1294
TfiI	GAWTC	3 cut(s)	53, 1018, 1351
Tru1I	TTAA	5 cut(s)	45, 714, 729, 768, 1408
Tru9I	TTAA	5 cut(s)	45, 714, 729, 768, 1408
TscAI	CASTG	1 cut(s)	1020
TseFI	GTSAC	2 cut(s)	355, 865
Tsp45I	GTSAC	2 cut(s)	355, 865
TspDTI	ATGAA	8 cut(s)	509, 534, 728, 782, 786, 1026, 1097, 1103
TspRI	CASTG	1 cut(s)	1020
VspI	ATTAAT	1 cut(s)	714
XapI	RAATTY	1 cut(s)	856
XceI	RCATGY	3 cut(s)	1133, 1181, 1274
XcmI	CCANNNNNNNNNTGG	1 cut(s)	914
XspI	CTAG	3 cut(s)	443, 483, 702
ZrmI	AGTACT	2 cut(s)	706, 1030

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.