Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0010263

Physical Location & Seq

Genomic Coordinates Reverse (-)

37668679 .. 37670384

Gene Structure 1706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG318300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGACCCTTGGGAACTTCCAGGGAGAAATATCCCTTTGCCGAGTTTACAAGAGACCCGGAGTGGAAGACCACCCGTCGCTGCCTCGTTCTCTGCCGTCATCCAGAGCCGCCGCTAATGCTAATAATGCATCCACATCAAGATCAGTACTGGCTCAGTCTTCCTCCTCGTCCACCTTAGACAAAAAGCAGCACAGCATTAACAGTAGTTTGATGGAAAAACTCCAAGCTAATTTTAACTTCAATGGAGGGTCGCCGTCACTTGGCCAATCTGTAGAACAACTTCATCATCATCAAGATCAGGTGGCTGCGGATCCAAAGATTAACGAAACGGAAGGAAGTAGCGGGAATTCGGATGTGACAAGCACGCTCGGCGTTGGCCTCCGTAGTAGTGCTCCTAATATTCCTCCAATTCATCTTCCATCATCGTCGCTCGGGCTACAACCTCATCACCATCACCATGGAGGAGTCATACACCTCGATGATCAGGCCGAACAAGAGGGGATGTCGACATTCTTGCAGCAGCAGCACCACCACCACTCAAAGCCACAATCAATGCTGTTCGCCGGATCTTCTGTTTCATCCACGTCTAACCCGATTGATGATCTTCAAAGACTCCTGAATTACCAACAGCAGCAAGCAGTTTCCAGCATTGCCAATCAACAACAAGCTCTACATGTACAACAATACTATGATGCTCATAATCATAATCACCACCACCACCAAGTACCTAGCAACGTGGTTAACCATTTCTCCAGTCCTTTCCCATTGGTACCTCCTCCATCGTCACAGTCTCAGCTCTCCCCCAACGGACTTCCAATAACTGCTTTCTCCGACCGCCTTTGGGACTGGAATCCTATCTCAGAACCAAACAGGGCGCCCGATCAGTACAACACCAATCCATTCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

302

Amino Acids

33.04

Weight (kDa)

6.45

Isoelectric Point (pI)

67.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010263)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02450 AT2G02450
fragaria_vesca	FvH4_5g27330
malus_domestica	MD08G1250000.v1.1 MD15G1444700.v1.1
prunus_persica	Prupe.1G587100_v2.0.a1 Prupe.1G587100_v2.0.a1 Prupe.1G587100_v2.0.a1 Prupe.1G587100_v2.0.a1
pyrus_communis	pycom08g21660 pycom15g39180
rosa_chinensis	RchiOBHm_Chr7g0218501
rosa_laevigata	RLG00000002365
rosa_multiflora	Rmu_sc0001301.1_g000047
rosa_roxburghii	Rroxscaffold_3G00240890
rosa_rugosa	Rorug07G0177700
rosa_samantha	Rh7AG319100 Rh7BG311000 Rh7CG335900 Rh7DG318300
rosa_wichuraiana	Rw7G027170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	769
AccB1I	GGYRCC	2 cut(s)	769, 874
AccI	GTMKAC	1 cut(s)	506
AciI	CCGC	5 cut(s)	108, 111, 308, 342, 835
AclWI	GGATC	3 cut(s)	305, 318, 574
AcoI	YGGCCR	1 cut(s)	262
AcsI	RAATTY	1 cut(s)	346
AcyI	GRCGYC	1 cut(s)	875
AfaI	GTAC	5 cut(s)	147, 678, 726, 771, 887
AfiI	CCNNNNNNNGG	2 cut(s)	260, 841
AflIII	ACRYGT	1 cut(s)	673
AgsI	TTSAA	3 cut(s)	241, 608, 904
AhdI	GACNNNNNGTC	1 cut(s)	73
AjiI	CACGTC	1 cut(s)	585
AjnI	CCWGG	1 cut(s)	18
AluBI	AGCT	3 cut(s)	227, 668, 796
AluI	AGCT	3 cut(s)	227, 668, 796
Alw21I	GWGCWC	1 cut(s)	394
Alw26I	GTCTC	2 cut(s)	46, 795
AlwI	GGATC	3 cut(s)	305, 318, 574
Ama87I	CYCGRG	1 cut(s)	431
AoxI	GGCC	3 cut(s)	262, 376, 486
ApeKI	GCWGC	7 cut(s)	79, 187, 305, 517, 520, 523, 631
ApoI	RAATTY	1 cut(s)	346
Asp700I	GAANNNNTTC	1 cut(s)	279
Asp718I	GGTACC	1 cut(s)	769
AspLEI	GCGC	1 cut(s)	877
AsuC2I	CCSGG	1 cut(s)	57
AsuHPI	GGTGA	3 cut(s)	440, 446, 701
AvaI	CYCGRG	1 cut(s)	431
BalI	TGGCCA	1 cut(s)	264
BamHI	GGATCC	1 cut(s)	310
BanI	GGYRCC	2 cut(s)	769, 874
BarI	GAAGNNNNNNTAC	2 cut(s)	264, 296
BbsI	GAAGAC	2 cut(s)	72, 150
Bbv12I	GWGCWC	1 cut(s)	394
BbvI	GCAGC	7 cut(s)	66, 199, 292, 529, 532, 535, 643
BccI	CCATC	4 cut(s)	205, 427, 459, 787
BceAI	ACGGC	2 cut(s)	79, 238
BcgI	CGANNNNNNTGC	2 cut(s)	496, 530
BciT130I	CCWGG	1 cut(s)	20
BclI	TGATCA	1 cut(s)	481
BcnI	CCSGG	1 cut(s)	57
BcoDI	GTCTC	2 cut(s)	46, 795
BfaI	CTAG	1 cut(s)	729
BfmI	CTRYAG	1 cut(s)	270
BfoI	RGCGCY	1 cut(s)	878
BisI	GCNGC	9 cut(s)	80, 108, 111, 188, 306, 518, 521, 524, 632
BlsI	GCNGC	9 cut(s)	81, 109, 112, 189, 307, 519, 522, 525, 633
BmcAI	AGTACT	1 cut(s)	147
Bme1390I	CCNGG	2 cut(s)	20, 57
BmeRI	GACNNNNNGTC	1 cut(s)	73
BmeT110I	CYCGRG	1 cut(s)	431
BmgBI	CACGTC	1 cut(s)	585
BmiI	GGNNCC	3 cut(s)	312, 771, 876
BmrFI	CCNGG	2 cut(s)	20, 57
BmsI	GCATC	2 cut(s)	137, 682
BpiI	GAAGAC	2 cut(s)	72, 150
BpmI	CTGGAG	1 cut(s)	736
BpuMI	CCSGG	1 cut(s)	57
BsaHI	GRCGYC	1 cut(s)	875
BsaI	GGTCTC	1 cut(s)	46
BsaJI	CCNNGG	3 cut(s)	7, 19, 457
BsaXI	ACNNNNNCTCC	2 cut(s)	734, 764
Bsc4I	CCNNNNNNNGG	2 cut(s)	260, 841
Bse1I	ACTGG	3 cut(s)	153, 753, 851
Bse3DI	GCAATG	1 cut(s)	648
BseBI	CCWGG	1 cut(s)	20
BseDI	CCNNGG	3 cut(s)	7, 19, 457
BseGI	GGATG	5 cut(s)	98, 128, 358, 507, 578
BseLI	CCNNNNNNNGG	2 cut(s)	260, 841
BseMI	GCAATG	1 cut(s)	648
BseMII	CTCAG	3 cut(s)	167, 806, 873
BseNI	ACTGG	3 cut(s)	153, 753, 851
BseRI	GAGGAG	3 cut(s)	154, 477, 765
BseXI	GCAGC	7 cut(s)	66, 199, 292, 529, 532, 535, 643
Bsh1285I	CGRYCG	1 cut(s)	835
BshFI	GGCC	3 cut(s)	264, 378, 488
BshNI	GGYRCC	2 cut(s)	769, 874
BsiEI	CGRYCG	1 cut(s)	835
BsiHKAI	GWGCWC	1 cut(s)	394
BsiHKCI	CYCGRG	1 cut(s)	431
BsiSI	CCGG	2 cut(s)	57, 564
BslFI	GGGAC	1 cut(s)	857
BslI	CCNNNNNNNGG	2 cut(s)	260, 841
BsmAI	GTCTC	2 cut(s)	46, 795
BsmFI	GGGAC	1 cut(s)	857
BsnI	GGCC	3 cut(s)	264, 378, 488
Bso31I	GGTCTC	1 cut(s)	46
BsoBI	CYCGRG	1 cut(s)	431
Bsp1286I	GDGCHC	1 cut(s)	394
Bsp1407I	TGTACA	1 cut(s)	676
Bsp143I	GATC	7 cut(s)	140, 295, 310, 481, 566, 601, 880
Bsp19I	CCATGG	1 cut(s)	457
BspACI	CCGC	5 cut(s)	108, 111, 308, 342, 835
BspANI	GGCC	3 cut(s)	264, 378, 488
BspCNI	CTCAG	3 cut(s)	166, 805, 872
BspLI	GGNNCC	3 cut(s)	312, 771, 876
BspPI	GGATC	3 cut(s)	305, 318, 574
BspT107I	GGYRCC	2 cut(s)	769, 874
BspTNI	GGTCTC	1 cut(s)	46
BsrDI	GCAATG	1 cut(s)	648
BsrGI	TGTACA	1 cut(s)	676
BsrI	ACTGG	3 cut(s)	153, 753, 851
BssECI	CCNNGG	3 cut(s)	7, 19, 457
BssMI	GATC	7 cut(s)	140, 295, 310, 481, 566, 601, 880
BssNI	GRCGYC	1 cut(s)	875
BssT1I	CCWWGG	2 cut(s)	7, 457
Bst2UI	CCWGG	1 cut(s)	20
Bst4CI	ACNGT	2 cut(s)	203, 789
BstACI	GRCGYC	1 cut(s)	875
BstAUI	TGTACA	1 cut(s)	676
BstC8I	GCNNGC	2 cut(s)	365, 636
BstDEI	CTNAG	4 cut(s)	153, 175, 792, 859
BstDSI	CCRYGG	1 cut(s)	457
BstF5I	GGATG	5 cut(s)	98, 128, 358, 507, 578
BstH2I	RGCGCY	1 cut(s)	878
BstHHI	GCGC	1 cut(s)	877
BstKTI	GATC	7 cut(s)	143, 298, 313, 484, 569, 604, 883
BstMAI	GTCTC	2 cut(s)	46, 795
BstMBI	GATC	7 cut(s)	140, 295, 310, 481, 566, 601, 880
BstMCI	CGRYCG	1 cut(s)	835
BstMWI	GCNNNNNNNGC	4 cut(s)	116, 125, 369, 523
BstNI	CCWGG	1 cut(s)	20
BstNSI	RCATGY	1 cut(s)	677
BstSCI	CCNGG	2 cut(s)	18, 55
BstSFI	CTRYAG	1 cut(s)	270
BstV1I	GCAGC	7 cut(s)	66, 199, 292, 529, 532, 535, 643
BstV2I	GAAGAC	2 cut(s)	72, 150
BstX2I	RGATCY	2 cut(s)	310, 566
BstXI	CCANNNNNNTGG	1 cut(s)	458
BstYI	RGATCY	2 cut(s)	310, 566
BsuRI	GGCC	3 cut(s)	264, 378, 488
BtgI	CCRYGG	1 cut(s)	457
BtrI	CACGTC	1 cut(s)	585
BtsCI	GGATG	5 cut(s)	98, 128, 358, 507, 578
Cac8I	GCNNGC	2 cut(s)	365, 636
CfoI	GCGC	1 cut(s)	877
Csp6I	GTAC	5 cut(s)	146, 677, 725, 770, 886
CviAII	CATG	2 cut(s)	458, 674
CviQI	GTAC	5 cut(s)	146, 677, 725, 770, 886
DdeI	CTNAG	4 cut(s)	153, 175, 792, 859
DinI	GGCGCC	1 cut(s)	876
DpnI	GATC	7 cut(s)	142, 297, 312, 483, 568, 603, 882
DpnII	GATC	7 cut(s)	140, 295, 310, 481, 566, 601, 880
DriI	GACNNNNNGTC	1 cut(s)	73
EaeI	YGGCCR	1 cut(s)	262
Eam1105I	GACNNNNNGTC	1 cut(s)	73
Eco130I	CCWWGG	2 cut(s)	7, 457
Eco31I	GGTCTC	1 cut(s)	46
Eco88I	CYCGRG	1 cut(s)	431
EcoRI	GAATTC	1 cut(s)	346
EcoRII	CCWGG	1 cut(s)	18
EcoT14I	CCWWGG	2 cut(s)	7, 457
EcoT22I	ATGCAT	1 cut(s)	130
EgeI	GGCGCC	1 cut(s)	876
EheI	GGCGCC	1 cut(s)	876
ErhI	CCWWGG	2 cut(s)	7, 457
FaeI	CATG	2 cut(s)	461, 677
FaiI	YATR	6 cut(s)	459, 470, 675, 690, 699, 705
FaqI	GGGAC	1 cut(s)	857
FatI	CATG	2 cut(s)	457, 673
FauI	CCCGC	1 cut(s)	335
FbaI	TGATCA	1 cut(s)	481
FblI	GTMKAC	1 cut(s)	506
Fnu4HI	GCNGC	9 cut(s)	80, 108, 111, 188, 306, 518, 521, 524, 632
FokI	GGATG	5 cut(s)	85, 115, 365, 514, 565
Fsp4HI	GCNGC	9 cut(s)	80, 108, 111, 188, 306, 518, 521, 524, 632
FspBI	CTAG	1 cut(s)	729
GlaI	GCGC	1 cut(s)	876
GluI	GCNGC	9 cut(s)	80, 108, 111, 188, 306, 518, 521, 524, 632
GsuI	CTGGAG	1 cut(s)	736
HaeII	RGCGCY	1 cut(s)	878
HaeIII	GGCC	3 cut(s)	264, 378, 488
HapII	CCGG	2 cut(s)	57, 564
HhaI	GCGC	1 cut(s)	877
Hin1I	GRCGYC	1 cut(s)	875
Hin1II	CATG	2 cut(s)	461, 677
Hin6I	GCGC	1 cut(s)	875
HinP1I	GCGC	1 cut(s)	875
HincII	GTYRAC	2 cut(s)	507, 742
HindII	GTYRAC	2 cut(s)	507, 742
HinfI	GANTC	3 cut(s)	465, 612, 850
HpaI	GTTAAC	1 cut(s)	742
HpaII	CCGG	2 cut(s)	57, 564
HphI	GGTGA	3 cut(s)	440, 446, 701
Hpy166II	GTNNAC	4 cut(s)	46, 171, 507, 742
Hpy188I	TCNGA	3 cut(s)	352, 832, 862
Hpy188III	TCNNGA	4 cut(s)	102, 138, 293, 616
Hpy8I	GTNNAC	4 cut(s)	46, 171, 507, 742
Hpy99I	CGWCG	2 cut(s)	79, 430
HpyAV	CCTTC	1 cut(s)	326
HpyCH4III	ACNGT	2 cut(s)	203, 789
HpyCH4IV	ACGT	2 cut(s)	584, 735
HpyCH4V	TGCA	2 cut(s)	128, 517
HpyF10VI	GCNNNNNNNGC	4 cut(s)	116, 125, 369, 523
HpyF3I	CTNAG	4 cut(s)	153, 175, 792, 859
HpySE526I	ACGT	2 cut(s)	584, 735
Hsp92I	GRCGYC	1 cut(s)	875
Hsp92II	CATG	2 cut(s)	461, 677
HspAI	GCGC	1 cut(s)	875
KasI	GGCGCC	1 cut(s)	874
KpnI	GGTACC	1 cut(s)	773
Ksp22I	TGATCA	1 cut(s)	481
KspAI	GTTAAC	1 cut(s)	742
Kzo9I	GATC	7 cut(s)	140, 295, 310, 481, 566, 601, 880
LmnI	GCTCC	1 cut(s)	397
Lsp1109I	GCAGC	7 cut(s)	66, 199, 292, 529, 532, 535, 643
LweI	GCATC	2 cut(s)	137, 682
MaeI	CTAG	1 cut(s)	729
MaeII	ACGT	2 cut(s)	584, 735
MaeIII	GTNAC	3 cut(s)	255, 355, 783
MalI	GATC	7 cut(s)	142, 297, 312, 483, 568, 603, 882
MboI	GATC	7 cut(s)	140, 295, 310, 481, 566, 601, 880
MboII	GAAGA	5 cut(s)	77, 150, 407, 561, 596
MflI	RGATCY	2 cut(s)	310, 566
MhlI	GDGCHC	1 cut(s)	394
MlsI	TGGCCA	1 cut(s)	264
MluCI	AATT	4 cut(s)	229, 346, 408, 619
MluNI	TGGCCA	1 cut(s)	264
Mly113I	GGCGCC	1 cut(s)	875
MlyI	GAGTC	2 cut(s)	474, 606
MmeI	TCCRAC	1 cut(s)	855
Mox20I	TGGCCA	1 cut(s)	264
Mph1103I	ATGCAT	1 cut(s)	130
MroXI	GAANNNNTTC	1 cut(s)	279
MscI	TGGCCA	1 cut(s)	264
MseI	TTAA	4 cut(s)	198, 234, 321, 741
MslI	CAYNNNNRTG	2 cut(s)	456, 477
Msp20I	TGGCCA	1 cut(s)	264
MspI	CCGG	2 cut(s)	57, 564
MspR9I	CCNGG	2 cut(s)	20, 57
MvaI	CCWGG	1 cut(s)	20
MwoI	GCNNNNNNNGC	4 cut(s)	116, 125, 369, 523
NarI	GGCGCC	1 cut(s)	875
NciI	CCSGG	1 cut(s)	57
NcoI	CCATGG	1 cut(s)	457
NdeII	GATC	7 cut(s)	140, 295, 310, 481, 566, 601, 880
NlaIII	CATG	2 cut(s)	461, 677
NlaIV	GGNNCC	3 cut(s)	312, 771, 876
NmeAIII	GCCGAG	2 cut(s)	65, 348
NmuCI	GTSAC	3 cut(s)	255, 355, 783
NsiI	ATGCAT	1 cut(s)	130
NspI	RCATGY	1 cut(s)	677
PciI	ACATGT	1 cut(s)	673
PcsI	WCGNNNNNNNCGW	1 cut(s)	590
PdmI	GAANNNNTTC	1 cut(s)	279
PfeI	GAWTC	1 cut(s)	850
PkrI	GCNGC	9 cut(s)	81, 109, 112, 189, 307, 519, 522, 525, 633
PleI	GAGTC	2 cut(s)	473, 606
PluTI	GGCGCC	1 cut(s)	878
PpsI	GAGTC	2 cut(s)	473, 606
PscI	ACATGT	1 cut(s)	673
Psp6I	CCWGG	1 cut(s)	18
PspGI	CCWGG	1 cut(s)	18
PspN4I	GGNNCC	3 cut(s)	312, 771, 876
PsuI	RGATCY	2 cut(s)	310, 566
RsaI	GTAC	5 cut(s)	147, 678, 726, 771, 887
RsaNI	GTAC	5 cut(s)	146, 677, 725, 770, 886
RseI	CAYNNNNRTG	2 cut(s)	456, 477
SalI	GTCGAC	1 cut(s)	505
SaqAI	TTAA	4 cut(s)	198, 234, 321, 741
SatI	GCNGC	9 cut(s)	80, 108, 111, 188, 306, 518, 521, 524, 632
Sau3AI	GATC	7 cut(s)	140, 295, 310, 481, 566, 601, 880
ScaI	AGTACT	1 cut(s)	147
SchI	GAGTC	2 cut(s)	474, 606
ScrFI	CCNGG	2 cut(s)	20, 57
SduI	GDGCHC	1 cut(s)	394
SfaNI	GCATC	2 cut(s)	137, 682
SfcI	CTRYAG	1 cut(s)	270
SfoI	GGCGCC	1 cut(s)	876
SmiMI	CAYNNNNRTG	2 cut(s)	456, 477
Sse9I	AATT	4 cut(s)	229, 346, 408, 619
SsiI	CCGC	5 cut(s)	108, 111, 308, 342, 835
SspDI	GGCGCC	1 cut(s)	874
SspI	AATATT	1 cut(s)	400
SspMI	CTAG	1 cut(s)	729
StyD4I	CCNGG	2 cut(s)	18, 55
StyI	CCWWGG	2 cut(s)	7, 457
TaaI	ACNGT	2 cut(s)	203, 789
TaiI	ACGT	2 cut(s)	587, 738
TaqI	TCGA	2 cut(s)	477, 506
TasI	AATT	4 cut(s)	229, 346, 408, 619
TatI	WGTACW	3 cut(s)	145, 676, 885
TauI	GCSGC	2 cut(s)	110, 113
TfiI	GAWTC	1 cut(s)	850
Tru1I	TTAA	4 cut(s)	198, 234, 321, 741
Tru9I	TTAA	4 cut(s)	198, 234, 321, 741
TseFI	GTSAC	3 cut(s)	255, 355, 783
TseI	GCWGC	7 cut(s)	79, 187, 305, 517, 520, 523, 631
Tsp45I	GTSAC	3 cut(s)	255, 355, 783
TspDTI	ATGAA	3 cut(s)	272, 401, 567
TspGWI	ACGGA	3 cut(s)	344, 371, 822
XapI	RAATTY	1 cut(s)	346
XceI	RCATGY	1 cut(s)	677
XmiI	GTMKAC	1 cut(s)	506
XmnI	GAANNNNTTC	1 cut(s)	279
XspI	CTAG	1 cut(s)	729
ZrmI	AGTACT	1 cut(s)	147
Zsp2I	ATGCAT	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.