RchiOBHm_Chr7g0218501
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0010263
Physical Location & Seq
Reverse (-)
36641941 .. 36645154
3214 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19560

Sequence Viewer

Length: 1404 bp
ATGGCAATTGCAGCAACGAGCAGGATGAGCCACGAAGAAGACGAGTCGAACAAGCAGGGCAATCATCATGATGAGGTTGATGATGAGCACGAGCATGACATGGTGATGCCGGGCTTTCGCTTCCATCCAACTGAAGAAGAACTGATAGAGTTTTACCTTCGCCGTAAGGTGGAGGGCAAGCGCTTCAATGTCGAACTGATTACTTTTCTCGACCTTTATCGCTATGACCCTTGGGAACTTCCAGCTATGGCCGCGATTGGAGAGAAGGAGTGGTTCTTTTATGTCCCGAGAGACAGAAAGTACCGGAACGGCGACAGGCCCAACCGTGTGACCACATCTGGATACTGGAAGGCAACTGGAGCCGATCGGATGATTCGAAGCGAGAACTTCCGGTCAATCGGATTGAAGAAAACCCTAGTTTTCTACTCTGGGAAAGCCCCCAAAGGCATTCGAACTAGCTGGATCATGAACGAGTATCGCTTGCCTCATCATGAAACTGAACGATATCAAAAGGGAGAAATATCCCTTTGCCGAGTTTACAAGAGACCCGGAGTGGAAGACCACCCGTCGCTGCCTCGTTCTCTGCCGTCATCCAGAGCCGCCGCTAATGCTAATAATGCATCCACATCAAGATCAGTACTGGCTCAGTCTTCCTCCTCGTCCACCCTAGACAAAAAGCAGCACAGCATTAACAGTAGTTTGATGGAAAAACTCCAAGCTAATTTTAACTTCAATGGAGGGTCGCCGTCACTTGGCCAATCTGTAGAACAACTTCATCATCATCAAGATCAGGTGGCTGTGGATCCAAAGATTAACGAAACGGAAGGAAGTAGCGGGAATTCGGATGTGACAAGCACGCTTGGCGTTGGCCTCCGTAGTAGTGCTCCTAATATTCCTCCAATTCATCTTCCATCATCGTCACTCGGGCTACAACCTCATCACCATCACCATCGAGGAGTCCTACACCTCGATGATCAGGCCGAACAAGAGGGGATGTCAACATTCTTGCAGCAGCAGCAGCACCACCACTCAAAGCCACAATCAATGCTGTTCGCCGGATCTTCTGTTTCATCCACGTCTAACCCGATTGATGATCTTCAAAGACTCTTGAATTACCAACAGCAGCAAGCAGTTTCCAACATTGCCAATCAACAACAAGCTCTACATGTACAACAATACTATGATGCTCATAATCATAATCACCATCACCACCACCAAGTACCTAGCAACGTGGTTAACCATTTCTCCAGTCCTTTCCCATTGGTACCTCCTCCATCGTCACAGTCTCAGCTCTCCCCCAACGGACTTCCAATAACTGCTTTCTCCGACCGCCTTTGGGACTGGAATCCGATCTCAGAACCAAACAGGGCGCCCGATCAGTACAACACCAATCCATTCAAGTAA

Protein Analysis

467

Amino Acids

53.01

Weight (kDa)

6.61

Isoelectric Point (pI)

60.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 37 - 161 7.1e-45 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1264
AccB1I GGYRCC 2 cut(s) 1264, 1369
AccII CGCG 1 cut(s) 254
AciI CCGC 5 cut(s) 252, 600, 603, 834, 1330
AclWI GGATC 4 cut(s) 470, 797, 810, 1066
AcoI YGGCCR 2 cut(s) 249, 754
AcsI RAATTY 1 cut(s) 838
AcuI CTGAAG 1 cut(s) 153
AcyI GRCGYC 1 cut(s) 1370
AfaI GTAC 6 cut(s) 302, 639, 1170, 1221, 1266, 1382
AfeI AGCGCT 1 cut(s) 182
AfiI CCNNNNNNNGG 3 cut(s) 169, 752, 1336
AflIII ACRYGT 1 cut(s) 1165
AgsI TTSAA 6 cut(s) 187, 406, 733, 1100, 1111, 1399
AhdI GACNNNNNGTC 1 cut(s) 565
AjiI CACGTC 1 cut(s) 1077
AluBI AGCT 5 cut(s) 245, 459, 719, 1160, 1291
AluI AGCT 5 cut(s) 245, 459, 719, 1160, 1291
Alw21I GWGCWC 2 cut(s) 90, 886
Alw26I GTCTC 3 cut(s) 285, 538, 1290
AlwI GGATC 4 cut(s) 470, 797, 810, 1066
Ama87I CYCGRG 2 cut(s) 286, 923
Aor51HI AGCGCT 1 cut(s) 182
AoxI GGCC 5 cut(s) 249, 317, 754, 868, 978
ApeKI GCWGC 8 cut(s) 11, 571, 679, 1009, 1012, 1015, 1018, 1123
ApoI RAATTY 1 cut(s) 838
Asp700I GAANNNNTTC 1 cut(s) 771
Asp718I GGTACC 1 cut(s) 1264
AspLEI GCGC 2 cut(s) 183, 1372
AspS9I GGNCC 1 cut(s) 318
AsuC2I CCSGG 2 cut(s) 111, 549
AsuHPI GGTGA 5 cut(s) 115, 932, 938, 1193, 1199
AsuII TTCGAA 2 cut(s) 376, 451
AvaI CYCGRG 2 cut(s) 286, 923
BalI TGGCCA 1 cut(s) 756
BamHI GGATCC 1 cut(s) 802
BanI GGYRCC 2 cut(s) 1264, 1369
BarI GAAGNNNNNNTAC 2 cut(s) 756, 788
BauI CACGAG 1 cut(s) 89
BbsI GAAGAC 3 cut(s) 45, 564, 642
Bbv12I GWGCWC 2 cut(s) 90, 886
BbvI GCAGC 8 cut(s) 23, 558, 691, 1021, 1024, 1027, 1030, 1135
BccI CCATC 7 cut(s) 132, 697, 919, 951, 957, 1212, 1282
BceAI ACGGC 4 cut(s) 147, 325, 571, 730
BciVI GTATCC 1 cut(s) 335
BclI TGATCA 1 cut(s) 973
BcnI CCSGG 2 cut(s) 111, 549
BcoDI GTCTC 3 cut(s) 285, 538, 1290
BfaI CTAG 4 cut(s) 416, 456, 668, 1224
BfmI CTRYAG 1 cut(s) 762
BfoI RGCGCY 2 cut(s) 184, 1373
BfuI GTATCC 1 cut(s) 335
BmcAI AGTACT 1 cut(s) 639
Bme1390I CCNGG 2 cut(s) 111, 549
BmeRI GACNNNNNGTC 1 cut(s) 565
BmeT110I CYCGRG 2 cut(s) 286, 923
BmgBI CACGTC 1 cut(s) 1077
BmgT120I GGNCC 1 cut(s) 318
BmiI GGNNCC 4 cut(s) 361, 804, 1266, 1371
BmrFI CCNGG 2 cut(s) 111, 549
BmsI GCATC 3 cut(s) 96, 629, 1174
BpiI GAAGAC 3 cut(s) 45, 564, 642
BpmI CTGGAG 2 cut(s) 378, 1231
Bpu14I TTCGAA 2 cut(s) 376, 451
BpuMI CCSGG 2 cut(s) 111, 549
BsaHI GRCGYC 1 cut(s) 1370
BsaI GGTCTC 1 cut(s) 538
BsaJI CCNNGG 1 cut(s) 230
BsaWI WCCGGW 2 cut(s) 303, 390
BsaXI ACNNNNNCTCC 2 cut(s) 1229, 1259
Bsc4I CCNNNNNNNGG 3 cut(s) 169, 752, 1336
Bse1I ACTGG 5 cut(s) 350, 361, 645, 1248, 1346
Bse3DI GCAATG 1 cut(s) 1140
BseDI CCNNGG 1 cut(s) 230
BseGI GGATG 8 cut(s) 30, 124, 375, 590, 620, 850, 999, 1070
BseLI CCNNNNNNNGG 3 cut(s) 169, 752, 1336
BseMI GCAATG 1 cut(s) 1140
BseMII CTCAG 3 cut(s) 659, 1301, 1368
BseNI ACTGG 5 cut(s) 350, 361, 645, 1248, 1346
BseRI GAGGAG 3 cut(s) 646, 969, 1260
BseXI GCAGC 8 cut(s) 23, 558, 691, 1021, 1024, 1027, 1030, 1135
Bsh1236I CGCG 1 cut(s) 254
Bsh1285I CGRYCG 2 cut(s) 367, 1330
BshFI GGCC 5 cut(s) 251, 319, 756, 870, 980
BshNI GGYRCC 2 cut(s) 1264, 1369
BsiEI CGRYCG 2 cut(s) 367, 1330
BsiHKAI GWGCWC 2 cut(s) 90, 886
BsiHKCI CYCGRG 2 cut(s) 286, 923
BsiSI CCGG 5 cut(s) 110, 304, 391, 549, 1056
BslFI GGGAC 2 cut(s) 269, 1352
BslI CCNNNNNNNGG 3 cut(s) 169, 752, 1336
BsmAI GTCTC 3 cut(s) 285, 538, 1290
BsmFI GGGAC 2 cut(s) 269, 1352
BsmI GAATGC 1 cut(s) 447
BsnI GGCC 5 cut(s) 251, 319, 756, 870, 980
Bso31I GGTCTC 1 cut(s) 538
BsoBI CYCGRG 2 cut(s) 286, 923
Bsp119I TTCGAA 2 cut(s) 376, 451
Bsp1286I GDGCHC 2 cut(s) 90, 886
Bsp1407I TGTACA 1 cut(s) 1168
BspACI CCGC 5 cut(s) 252, 600, 603, 834, 1330
BspANI GGCC 5 cut(s) 251, 319, 756, 870, 980
BspCNI CTCAG 3 cut(s) 658, 1300, 1367
BspFNI CGCG 1 cut(s) 254
BspHI TCATGA 3 cut(s) 67, 465, 490
BspLI GGNNCC 4 cut(s) 361, 804, 1266, 1371
BspPI GGATC 4 cut(s) 470, 797, 810, 1066
BspT104I TTCGAA 2 cut(s) 376, 451
BspT107I GGYRCC 2 cut(s) 1264, 1369
BspTNI GGTCTC 1 cut(s) 538
BsrDI GCAATG 1 cut(s) 1140
BsrGI TGTACA 1 cut(s) 1168
BsrI ACTGG 5 cut(s) 350, 361, 645, 1248, 1346
BssECI CCNNGG 1 cut(s) 230
BssNI GRCGYC 1 cut(s) 1370
BssSI CACGAG 1 cut(s) 89
BssT1I CCWWGG 1 cut(s) 230
Bst2BI CACGAG 1 cut(s) 89
Bst4CI ACNGT 3 cut(s) 326, 695, 1284
BstACI GRCGYC 1 cut(s) 1370
BstAUI TGTACA 1 cut(s) 1168
BstBI TTCGAA 2 cut(s) 376, 451
BstC8I GCNNGC 4 cut(s) 179, 482, 857, 1128
BstDEI CTNAG 3 cut(s) 645, 1287, 1354
BstF5I GGATG 8 cut(s) 30, 124, 375, 590, 620, 850, 999, 1070
BstFNI CGCG 1 cut(s) 254
BstH2I RGCGCY 2 cut(s) 184, 1373
BstHHI GCGC 2 cut(s) 183, 1372
BstMAI GTCTC 3 cut(s) 285, 538, 1290
BstMCI CGRYCG 2 cut(s) 367, 1330
BstMWI GCNNNNNNNGC 9 cut(s) 11, 27, 251, 359, 608, 617, 861, 1015, 1018
BstNSI RCATGY 1 cut(s) 1169
BstSCI CCNGG 2 cut(s) 109, 547
BstSFI CTRYAG 1 cut(s) 762
BstUI CGCG 1 cut(s) 254
BstV1I GCAGC 8 cut(s) 23, 558, 691, 1021, 1024, 1027, 1030, 1135
BstV2I GAAGAC 3 cut(s) 45, 564, 642
BstX2I RGATCY 2 cut(s) 802, 1058
BstYI RGATCY 2 cut(s) 802, 1058
BsuI GTATCC 1 cut(s) 335
BsuRI GGCC 5 cut(s) 251, 319, 756, 870, 980
BtrI CACGTC 1 cut(s) 1077
BtsCI GGATG 8 cut(s) 30, 124, 375, 590, 620, 850, 999, 1070
Cac8I GCNNGC 4 cut(s) 179, 482, 857, 1128
CciI TCATGA 3 cut(s) 67, 465, 490
CfoI GCGC 2 cut(s) 183, 1372
Cfr13I GGNCC 1 cut(s) 318
Csp6I GTAC 6 cut(s) 301, 638, 1169, 1220, 1265, 1381
CviAII CATG 6 cut(s) 68, 95, 100, 466, 491, 1166
CviQI GTAC 6 cut(s) 301, 638, 1169, 1220, 1265, 1381
DdeI CTNAG 3 cut(s) 645, 1287, 1354
DinI GGCGCC 1 cut(s) 1371
DriI GACNNNNNGTC 1 cut(s) 565
EaeI YGGCCR 2 cut(s) 249, 754
Eam1105I GACNNNNNGTC 1 cut(s) 565
Eco130I CCWWGG 1 cut(s) 230
Eco31I GGTCTC 1 cut(s) 538
Eco32I GATATC 1 cut(s) 506
Eco47III AGCGCT 1 cut(s) 182
Eco57I CTGAAG 1 cut(s) 153
Eco88I CYCGRG 2 cut(s) 286, 923
EcoRI GAATTC 1 cut(s) 838
EcoRV GATATC 1 cut(s) 506
EcoT14I CCWWGG 1 cut(s) 230
EcoT22I ATGCAT 1 cut(s) 622
EgeI GGCGCC 1 cut(s) 1371
EheI GGCGCC 1 cut(s) 1371
ErhI CCWWGG 1 cut(s) 230
FaeI CATG 6 cut(s) 71, 98, 103, 469, 494, 1169
FaqI GGGAC 2 cut(s) 269, 1352
FatI CATG 6 cut(s) 67, 94, 99, 465, 490, 1165
FauI CCCGC 1 cut(s) 827
FbaI TGATCA 1 cut(s) 973
FokI GGATG 8 cut(s) 37, 111, 382, 577, 607, 857, 1006, 1057
FspBI CTAG 4 cut(s) 416, 456, 668, 1224
GlaI GCGC 2 cut(s) 182, 1371
GsuI CTGGAG 2 cut(s) 378, 1231
HaeII RGCGCY 2 cut(s) 184, 1373
HaeIII GGCC 5 cut(s) 251, 319, 756, 870, 980
HapII CCGG 5 cut(s) 110, 304, 391, 549, 1056
HhaI GCGC 2 cut(s) 183, 1372
Hin1I GRCGYC 1 cut(s) 1370
Hin1II CATG 6 cut(s) 71, 98, 103, 469, 494, 1169
Hin6I GCGC 2 cut(s) 181, 1370
HinP1I GCGC 2 cut(s) 181, 1370
HincII GTYRAC 2 cut(s) 999, 1237
HindII GTYRAC 2 cut(s) 999, 1237
HinfI GANTC 5 cut(s) 44, 373, 957, 1104, 1345
HpaI GTTAAC 1 cut(s) 1237
HpaII CCGG 5 cut(s) 110, 304, 391, 549, 1056
HphI GGTGA 5 cut(s) 115, 932, 938, 1193, 1199
Hpy166II GTNNAC 4 cut(s) 538, 663, 999, 1237
Hpy188I TCNGA 6 cut(s) 369, 401, 844, 1327, 1350, 1357
Hpy8I GTNNAC 4 cut(s) 538, 663, 999, 1237
Hpy99I CGWCG 1 cut(s) 571
HpyAV CCTTC 4 cut(s) 167, 259, 343, 818
HpyCH4III ACNGT 3 cut(s) 326, 695, 1284
HpyCH4IV ACGT 2 cut(s) 1076, 1230
HpyCH4V TGCA 3 cut(s) 11, 620, 1009
HpyF10VI GCNNNNNNNGC 9 cut(s) 11, 27, 251, 359, 608, 617, 861, 1015, 1018
HpyF3I CTNAG 3 cut(s) 645, 1287, 1354
HpySE526I ACGT 2 cut(s) 1076, 1230
Hsp92I GRCGYC 1 cut(s) 1370
Hsp92II CATG 6 cut(s) 71, 98, 103, 469, 494, 1169
HspAI GCGC 2 cut(s) 181, 1370
KasI GGCGCC 1 cut(s) 1369
KpnI GGTACC 1 cut(s) 1268
Ksp22I TGATCA 1 cut(s) 973
KspAI GTTAAC 1 cut(s) 1237
LmnI GCTCC 2 cut(s) 359, 889
Lsp1109I GCAGC 8 cut(s) 23, 558, 691, 1021, 1024, 1027, 1030, 1135
LweI GCATC 3 cut(s) 96, 629, 1174
MaeI CTAG 4 cut(s) 416, 456, 668, 1224
MaeII ACGT 2 cut(s) 1076, 1230
MaeIII GTNAC 5 cut(s) 328, 747, 847, 918, 1278
MfeI CAATTG 1 cut(s) 6
MflI RGATCY 2 cut(s) 802, 1058
MhlI GDGCHC 2 cut(s) 90, 886
MlsI TGGCCA 1 cut(s) 756
MluCI AATT 5 cut(s) 6, 721, 838, 900, 1111
MluNI TGGCCA 1 cut(s) 756
Mly113I GGCGCC 1 cut(s) 1370
MlyI GAGTC 3 cut(s) 53, 966, 1098
MmeI TCCRAC 3 cut(s) 152, 1161, 1350
Mox20I TGGCCA 1 cut(s) 756
Mph1103I ATGCAT 1 cut(s) 622
MroXI GAANNNNTTC 1 cut(s) 771
MscI TGGCCA 1 cut(s) 756
MseI TTAA 4 cut(s) 690, 726, 813, 1236
MslI CAYNNNNRTG 4 cut(s) 69, 93, 104, 969
Msp20I TGGCCA 1 cut(s) 756
MspI CCGG 5 cut(s) 110, 304, 391, 549, 1056
MspR9I CCNGG 2 cut(s) 111, 549
MunI CAATTG 1 cut(s) 6
Mva1269I GAATGC 1 cut(s) 447
MvnI CGCG 1 cut(s) 254
MwoI GCNNNNNNNGC 9 cut(s) 11, 27, 251, 359, 608, 617, 861, 1015, 1018
NarI GGCGCC 1 cut(s) 1370
NciI CCSGG 2 cut(s) 111, 549
NlaIII CATG 6 cut(s) 71, 98, 103, 469, 494, 1169
NlaIV GGNNCC 4 cut(s) 361, 804, 1266, 1371
NmeAIII GCCGAG 1 cut(s) 557
NmuCI GTSAC 5 cut(s) 328, 747, 847, 918, 1278
NsiI ATGCAT 1 cut(s) 622
NspI RCATGY 1 cut(s) 1169
NspV TTCGAA 2 cut(s) 376, 451
PagI TCATGA 3 cut(s) 67, 465, 490
PciI ACATGT 1 cut(s) 1165
PcsI WCGNNNNNNNCGW 3 cut(s) 39, 373, 1082
PctI GAATGC 1 cut(s) 447
PdmI GAANNNNTTC 1 cut(s) 771
PfeI GAWTC 2 cut(s) 373, 1345
Ple19I CGATCG 1 cut(s) 367
PleI GAGTC 3 cut(s) 52, 965, 1098
PluTI GGCGCC 1 cut(s) 1373
PpsI GAGTC 3 cut(s) 52, 965, 1098
PscI ACATGT 1 cut(s) 1165
PspN4I GGNNCC 4 cut(s) 361, 804, 1266, 1371
PspPI GGNCC 1 cut(s) 318
PsuI RGATCY 2 cut(s) 802, 1058
PvuI CGATCG 1 cut(s) 367
RsaI GTAC 6 cut(s) 302, 639, 1170, 1221, 1266, 1382
RsaNI GTAC 6 cut(s) 301, 638, 1169, 1220, 1265, 1381
RseI CAYNNNNRTG 4 cut(s) 69, 93, 104, 969
SaqAI TTAA 4 cut(s) 690, 726, 813, 1236
Sau96I GGNCC 1 cut(s) 318
ScaI AGTACT 1 cut(s) 639
SchI GAGTC 3 cut(s) 53, 966, 1098
ScrFI CCNGG 2 cut(s) 111, 549
SduI GDGCHC 2 cut(s) 90, 886
SfaNI GCATC 3 cut(s) 96, 629, 1174
SfcI CTRYAG 1 cut(s) 762
SfoI GGCGCC 1 cut(s) 1371
SfuI TTCGAA 2 cut(s) 376, 451
SmiMI CAYNNNNRTG 4 cut(s) 69, 93, 104, 969
Sse9I AATT 5 cut(s) 6, 721, 838, 900, 1111
SsiI CCGC 5 cut(s) 252, 600, 603, 834, 1330
SspDI GGCGCC 1 cut(s) 1369
SspI AATATT 1 cut(s) 892
SspMI CTAG 4 cut(s) 416, 456, 668, 1224
StyD4I CCNGG 2 cut(s) 109, 547
StyI CCWWGG 1 cut(s) 230
TaaI ACNGT 3 cut(s) 326, 695, 1284
TaiI ACGT 2 cut(s) 1079, 1233
TaqI TCGA 7 cut(s) 47, 192, 210, 376, 451, 952, 969
TasI AATT 5 cut(s) 6, 721, 838, 900, 1111
TatI WGTACW 3 cut(s) 637, 1168, 1380
TauI GCSGC 3 cut(s) 254, 602, 605
TfiI GAWTC 2 cut(s) 373, 1345
Tru1I TTAA 4 cut(s) 690, 726, 813, 1236
Tru9I TTAA 4 cut(s) 690, 726, 813, 1236
TseFI GTSAC 5 cut(s) 328, 747, 847, 918, 1278
TseI GCWGC 8 cut(s) 11, 571, 679, 1009, 1012, 1015, 1018, 1123
Tsp45I GTSAC 5 cut(s) 328, 747, 847, 918, 1278
TspDTI ATGAA 5 cut(s) 482, 507, 764, 893, 1059
TspGWI ACGGA 3 cut(s) 836, 863, 1317
XapI RAATTY 1 cut(s) 838
XceI RCATGY 1 cut(s) 1169
XmnI GAANNNNTTC 1 cut(s) 771
XspI CTAG 4 cut(s) 416, 456, 668, 1224
ZrmI AGTACT 1 cut(s) 639
Zsp2I ATGCAT 1 cut(s) 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.