Rh7BG311000
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0010263
Physical Location & Seq
Reverse (-)
30040979 .. 30042538
1560 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG311000.1

Sequence Viewer

Length: 1155 bp
ATGGCCGCGATTGGAGAGAAGGAGTGGTTCTTTTATGTCCCGAGAGACAGAAAGTACCGGAACGGCGACAGGCCCAACCGTGTGACCACATCTGGATACTGGAAGGCAACTGGAGCCGATCGGATGATTCGAAGCGAGAACTTCCGGTCAATCGGATTGAAGAAAACCCTAGTTTTCTACTCTGGGAAAGCCCCCAAAGGCATTCGAACTAGCTGGATCATGAACGAGTATCGCTTGCCCCATCATGAAACTGAACGATATCAAAAGGGAGAAATATCCCTTTGCCGAGTTTACAAGAGACCCGGAGTGGAAGACCACCCGTCGCTGCCTCGTTCTCTGCCGTCATCCAGAGCCGCCGCTAATGCTAATAATGCATCCACATCAAGATCAGTACTGGCTCAGTCTTCCTCCTCGTCCACCTTAGACAAAAAGCAGCACAGCATTAACAGTAGTTTGATGGAAAAACTCCAAGCTAATTTTAACTTCAATGGAGGGTCGCCGTCACTTGGCCAATCTGTAGAACAACTTCATCATCATCAAGATCAGGTGGCTGCGGATCCAAAGATTAACGAAACGGAAGTAAGTAGTGGGAATTCGGATGTGACAAGCACGCTCGGCGTTGGCCTCCGTAGTAGTGCTCCTAATATTCCTCCAATTCATCTTCCATCATCGTCACTCGGACTACAACCTCATCACCATCACCATGGAGGAGTCCTACACCTCGATGATCAGGCCGAACAAGAGGGGATGTCGACATTCTTGCAGCAGCACCACCACCACTCAAAGCCACAATCAATGCTGTTCGCCGGATCTTCTGTTTCGTCCACGTCTAACCCGATTGATGATCTTCAAAGACTCTTGAATTACCAACAACAGCAAGCAGTTTCCAACATTGCCAATCAACAACAAGCTTTACATGTACAACAATACTATGATGCTCATAATCATAATCACCACCACCACCACCAAGTACCTAGCAACGTGGTTAACCATTTCTCCAGTCCTTTCCCATTGGTACCTCCTCCATCGTCACAGTCTCAGCTCTCCCCCAACGGACTTCCAATAACTGCTTTCTCCGACCGCCTTTGGGACTGGAATCCAATCTCAGAACCAAATAGGGCGCCCGATCAGTACAACACCAATCCATTCAAGTAA

Protein Analysis

384

Amino Acids

42.95

Weight (kDa)

9.03

Isoelectric Point (pI)

57.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 4 - 79 4e-23 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1015
AccB1I GGYRCC 2 cut(s) 1015, 1120
AccI GTMKAC 1 cut(s) 752
AccII CGCG 1 cut(s) 8
AciI CCGC 5 cut(s) 6, 354, 357, 554, 1081
AclWI GGATC 4 cut(s) 224, 551, 564, 817
AcoI YGGCCR 2 cut(s) 3, 508
AcsI RAATTY 1 cut(s) 592
AcyI GRCGYC 1 cut(s) 1121
AfaI GTAC 6 cut(s) 56, 393, 921, 972, 1017, 1133
AfiI CCNNNNNNNGG 2 cut(s) 506, 1087
AflIII ACRYGT 1 cut(s) 916
AgsI TTSAA 5 cut(s) 160, 487, 851, 862, 1150
AhdI GACNNNNNGTC 1 cut(s) 319
AjiI CACGTC 1 cut(s) 828
AluBI AGCT 4 cut(s) 213, 473, 911, 1042
AluI AGCT 4 cut(s) 213, 473, 911, 1042
Alw21I GWGCWC 1 cut(s) 640
Alw26I GTCTC 3 cut(s) 39, 292, 1041
AlwI GGATC 4 cut(s) 224, 551, 564, 817
Ama87I CYCGRG 1 cut(s) 40
AoxI GGCC 5 cut(s) 3, 71, 508, 622, 732
ApeKI GCWGC 5 cut(s) 325, 433, 551, 763, 766
ApoI RAATTY 1 cut(s) 592
Asp700I GAANNNNTTC 1 cut(s) 525
Asp718I GGTACC 1 cut(s) 1015
AspLEI GCGC 1 cut(s) 1123
AspS9I GGNCC 1 cut(s) 72
AsuC2I CCSGG 1 cut(s) 303
AsuHPI GGTGA 3 cut(s) 686, 692, 944
AsuII TTCGAA 2 cut(s) 130, 205
AvaI CYCGRG 1 cut(s) 40
BalI TGGCCA 1 cut(s) 510
BamHI GGATCC 1 cut(s) 556
BanI GGYRCC 2 cut(s) 1015, 1120
BarI GAAGNNNNNNTAC 2 cut(s) 510, 542
BbsI GAAGAC 2 cut(s) 318, 396
Bbv12I GWGCWC 1 cut(s) 640
BbvI GCAGC 5 cut(s) 312, 445, 538, 775, 778
BccI CCATC 5 cut(s) 249, 451, 673, 705, 1033
BceAI ACGGC 3 cut(s) 79, 325, 484
BcgI CGANNNNNNTGC 2 cut(s) 742, 776
BciVI GTATCC 1 cut(s) 89
BclI TGATCA 1 cut(s) 727
BcnI CCSGG 1 cut(s) 303
BcoDI GTCTC 3 cut(s) 39, 292, 1041
BfaI CTAG 3 cut(s) 170, 210, 975
BfmI CTRYAG 1 cut(s) 516
BfoI RGCGCY 1 cut(s) 1124
BfuI GTATCC 1 cut(s) 89
BisI GCNGC 8 cut(s) 6, 326, 354, 357, 434, 552, 764, 767
BlsI GCNGC 8 cut(s) 7, 327, 355, 358, 435, 553, 765, 768
BmcAI AGTACT 1 cut(s) 393
Bme1390I CCNGG 1 cut(s) 303
BmeRI GACNNNNNGTC 1 cut(s) 319
BmeT110I CYCGRG 1 cut(s) 40
BmgBI CACGTC 1 cut(s) 828
BmgT120I GGNCC 1 cut(s) 72
BmiI GGNNCC 4 cut(s) 115, 558, 1017, 1122
BmrFI CCNGG 1 cut(s) 303
BmsI GCATC 2 cut(s) 383, 925
BpiI GAAGAC 2 cut(s) 318, 396
BpmI CTGGAG 2 cut(s) 132, 982
Bpu14I TTCGAA 2 cut(s) 130, 205
BpuMI CCSGG 1 cut(s) 303
BsaHI GRCGYC 1 cut(s) 1121
BsaI GGTCTC 1 cut(s) 292
BsaJI CCNNGG 1 cut(s) 703
BsaWI WCCGGW 2 cut(s) 57, 144
BsaXI ACNNNNNCTCC 2 cut(s) 980, 1010
Bsc4I CCNNNNNNNGG 2 cut(s) 506, 1087
Bse1I ACTGG 5 cut(s) 104, 115, 399, 999, 1097
Bse3DI GCAATG 1 cut(s) 891
BseDI CCNNGG 1 cut(s) 703
BseGI GGATG 5 cut(s) 129, 344, 374, 604, 753
BseLI CCNNNNNNNGG 2 cut(s) 506, 1087
BseMI GCAATG 1 cut(s) 891
BseMII CTCAG 3 cut(s) 413, 1052, 1119
BseNI ACTGG 5 cut(s) 104, 115, 399, 999, 1097
BseRI GAGGAG 3 cut(s) 400, 723, 1011
BseXI GCAGC 5 cut(s) 312, 445, 538, 775, 778
Bsh1236I CGCG 1 cut(s) 8
Bsh1285I CGRYCG 2 cut(s) 121, 1081
BshFI GGCC 5 cut(s) 5, 73, 510, 624, 734
BshNI GGYRCC 2 cut(s) 1015, 1120
BsiEI CGRYCG 2 cut(s) 121, 1081
BsiHKAI GWGCWC 1 cut(s) 640
BsiHKCI CYCGRG 1 cut(s) 40
BsiSI CCGG 4 cut(s) 58, 145, 303, 807
BslFI GGGAC 2 cut(s) 23, 1103
BslI CCNNNNNNNGG 2 cut(s) 506, 1087
BsmAI GTCTC 3 cut(s) 39, 292, 1041
BsmFI GGGAC 2 cut(s) 23, 1103
BsmI GAATGC 1 cut(s) 201
BsnI GGCC 5 cut(s) 5, 73, 510, 624, 734
Bso31I GGTCTC 1 cut(s) 292
BsoBI CYCGRG 1 cut(s) 40
Bsp119I TTCGAA 2 cut(s) 130, 205
Bsp1286I GDGCHC 1 cut(s) 640
Bsp1407I TGTACA 1 cut(s) 919
Bsp143I GATC 9 cut(s) 118, 216, 386, 541, 556, 727, 809, 844, 1126
Bsp19I CCATGG 1 cut(s) 703
BspACI CCGC 5 cut(s) 6, 354, 357, 554, 1081
BspANI GGCC 5 cut(s) 5, 73, 510, 624, 734
BspCNI CTCAG 3 cut(s) 412, 1051, 1118
BspFNI CGCG 1 cut(s) 8
BspHI TCATGA 2 cut(s) 219, 244
BspLI GGNNCC 4 cut(s) 115, 558, 1017, 1122
BspPI GGATC 4 cut(s) 224, 551, 564, 817
BspT104I TTCGAA 2 cut(s) 130, 205
BspT107I GGYRCC 2 cut(s) 1015, 1120
BspTNI GGTCTC 1 cut(s) 292
BsrDI GCAATG 1 cut(s) 891
BsrGI TGTACA 1 cut(s) 919
BsrI ACTGG 5 cut(s) 104, 115, 399, 999, 1097
BssECI CCNNGG 1 cut(s) 703
BssMI GATC 9 cut(s) 118, 216, 386, 541, 556, 727, 809, 844, 1126
BssNI GRCGYC 1 cut(s) 1121
BssT1I CCWWGG 1 cut(s) 703
Bst4CI ACNGT 3 cut(s) 80, 449, 1035
BstACI GRCGYC 1 cut(s) 1121
BstAUI TGTACA 1 cut(s) 919
BstBI TTCGAA 2 cut(s) 130, 205
BstC8I GCNNGC 3 cut(s) 236, 611, 879
BstDEI CTNAG 4 cut(s) 399, 421, 1038, 1105
BstDSI CCRYGG 1 cut(s) 703
BstF5I GGATG 5 cut(s) 129, 344, 374, 604, 753
BstFNI CGCG 1 cut(s) 8
BstH2I RGCGCY 1 cut(s) 1124
BstHHI GCGC 1 cut(s) 1123
BstKTI GATC 9 cut(s) 121, 219, 389, 544, 559, 730, 812, 847, 1129
BstMAI GTCTC 3 cut(s) 39, 292, 1041
BstMBI GATC 9 cut(s) 118, 216, 386, 541, 556, 727, 809, 844, 1126
BstMCI CGRYCG 2 cut(s) 121, 1081
BstMWI GCNNNNNNNGC 4 cut(s) 113, 362, 371, 615
BstNSI RCATGY 1 cut(s) 920
BstSCI CCNGG 1 cut(s) 301
BstSFI CTRYAG 1 cut(s) 516
BstUI CGCG 1 cut(s) 8
BstV1I GCAGC 5 cut(s) 312, 445, 538, 775, 778
BstV2I GAAGAC 2 cut(s) 318, 396
BstX2I RGATCY 2 cut(s) 556, 809
BstXI CCANNNNNNTGG 1 cut(s) 704
BstYI RGATCY 2 cut(s) 556, 809
BsuI GTATCC 1 cut(s) 89
BsuRI GGCC 5 cut(s) 5, 73, 510, 624, 734
BtgI CCRYGG 1 cut(s) 703
BtrI CACGTC 1 cut(s) 828
BtsCI GGATG 5 cut(s) 129, 344, 374, 604, 753
Cac8I GCNNGC 3 cut(s) 236, 611, 879
CciI TCATGA 2 cut(s) 219, 244
CfoI GCGC 1 cut(s) 1123
Cfr13I GGNCC 1 cut(s) 72
Csp6I GTAC 6 cut(s) 55, 392, 920, 971, 1016, 1132
CviAII CATG 4 cut(s) 220, 245, 704, 917
CviQI GTAC 6 cut(s) 55, 392, 920, 971, 1016, 1132
DdeI CTNAG 4 cut(s) 399, 421, 1038, 1105
DinI GGCGCC 1 cut(s) 1122
DpnI GATC 9 cut(s) 120, 218, 388, 543, 558, 729, 811, 846, 1128
DpnII GATC 9 cut(s) 118, 216, 386, 541, 556, 727, 809, 844, 1126
DriI GACNNNNNGTC 1 cut(s) 319
EaeI YGGCCR 2 cut(s) 3, 508
Eam1105I GACNNNNNGTC 1 cut(s) 319
Eco130I CCWWGG 1 cut(s) 703
Eco31I GGTCTC 1 cut(s) 292
Eco32I GATATC 1 cut(s) 260
Eco88I CYCGRG 1 cut(s) 40
EcoRI GAATTC 1 cut(s) 592
EcoRV GATATC 1 cut(s) 260
EcoT14I CCWWGG 1 cut(s) 703
EcoT22I ATGCAT 1 cut(s) 376
EgeI GGCGCC 1 cut(s) 1122
EheI GGCGCC 1 cut(s) 1122
ErhI CCWWGG 1 cut(s) 703
FaeI CATG 4 cut(s) 223, 248, 707, 920
FaiI YATR 8 cut(s) 36, 221, 246, 705, 918, 933, 942, 948
FaqI GGGAC 2 cut(s) 23, 1103
FatI CATG 4 cut(s) 219, 244, 703, 916
FbaI TGATCA 1 cut(s) 727
FblI GTMKAC 1 cut(s) 752
Fnu4HI GCNGC 8 cut(s) 6, 326, 354, 357, 434, 552, 764, 767
FokI GGATG 5 cut(s) 136, 331, 361, 611, 760
Fsp4HI GCNGC 8 cut(s) 6, 326, 354, 357, 434, 552, 764, 767
FspBI CTAG 3 cut(s) 170, 210, 975
GlaI GCGC 1 cut(s) 1122
GluI GCNGC 8 cut(s) 6, 326, 354, 357, 434, 552, 764, 767
GsuI CTGGAG 2 cut(s) 132, 982
HaeII RGCGCY 1 cut(s) 1124
HaeIII GGCC 5 cut(s) 5, 73, 510, 624, 734
HapII CCGG 4 cut(s) 58, 145, 303, 807
HhaI GCGC 1 cut(s) 1123
Hin1I GRCGYC 1 cut(s) 1121
Hin1II CATG 4 cut(s) 223, 248, 707, 920
Hin6I GCGC 1 cut(s) 1121
HinP1I GCGC 1 cut(s) 1121
HincII GTYRAC 2 cut(s) 753, 988
HindII GTYRAC 2 cut(s) 753, 988
HindIII AAGCTT 1 cut(s) 909
HinfI GANTC 4 cut(s) 127, 711, 855, 1096
HpaI GTTAAC 1 cut(s) 988
HpaII CCGG 4 cut(s) 58, 145, 303, 807
HphI GGTGA 3 cut(s) 686, 692, 944
Hpy166II GTNNAC 5 cut(s) 292, 417, 753, 825, 988
Hpy188I TCNGA 6 cut(s) 123, 155, 598, 680, 1078, 1108
Hpy188III TCNNGA 8 cut(s) 40, 93, 220, 245, 348, 384, 539, 859
Hpy8I GTNNAC 5 cut(s) 292, 417, 753, 825, 988
Hpy99I CGWCG 1 cut(s) 325
HpyAV CCTTC 2 cut(s) 13, 97
HpyCH4III ACNGT 3 cut(s) 80, 449, 1035
HpyCH4IV ACGT 2 cut(s) 827, 981
HpyCH4V TGCA 2 cut(s) 374, 763
HpyF10VI GCNNNNNNNGC 4 cut(s) 113, 362, 371, 615
HpyF3I CTNAG 4 cut(s) 399, 421, 1038, 1105
HpySE526I ACGT 2 cut(s) 827, 981
Hsp92I GRCGYC 1 cut(s) 1121
Hsp92II CATG 4 cut(s) 223, 248, 707, 920
HspAI GCGC 1 cut(s) 1121
KasI GGCGCC 1 cut(s) 1120
KpnI GGTACC 1 cut(s) 1019
Ksp22I TGATCA 1 cut(s) 727
KspAI GTTAAC 1 cut(s) 988
Kzo9I GATC 9 cut(s) 118, 216, 386, 541, 556, 727, 809, 844, 1126
LmnI GCTCC 2 cut(s) 113, 643
Lsp1109I GCAGC 5 cut(s) 312, 445, 538, 775, 778
LweI GCATC 2 cut(s) 383, 925
MaeI CTAG 3 cut(s) 170, 210, 975
MaeII ACGT 2 cut(s) 827, 981
MaeIII GTNAC 5 cut(s) 82, 501, 601, 672, 1029
MalI GATC 9 cut(s) 120, 218, 388, 543, 558, 729, 811, 846, 1128
MboI GATC 9 cut(s) 118, 216, 386, 541, 556, 727, 809, 844, 1126
MboII GAAGA 6 cut(s) 172, 323, 396, 653, 804, 839
MflI RGATCY 2 cut(s) 556, 809
MhlI GDGCHC 1 cut(s) 640
MlsI TGGCCA 1 cut(s) 510
MluCI AATT 4 cut(s) 475, 592, 654, 862
MluNI TGGCCA 1 cut(s) 510
Mly113I GGCGCC 1 cut(s) 1121
MlyI GAGTC 2 cut(s) 720, 849
MmeI TCCRAC 2 cut(s) 912, 1101
Mox20I TGGCCA 1 cut(s) 510
Mph1103I ATGCAT 1 cut(s) 376
MroXI GAANNNNTTC 1 cut(s) 525
MscI TGGCCA 1 cut(s) 510
MseI TTAA 4 cut(s) 444, 480, 567, 987
MslI CAYNNNNRTG 2 cut(s) 702, 723
Msp20I TGGCCA 1 cut(s) 510
MspI CCGG 4 cut(s) 58, 145, 303, 807
MspR9I CCNGG 1 cut(s) 303
Mva1269I GAATGC 1 cut(s) 201
MvnI CGCG 1 cut(s) 8
MwoI GCNNNNNNNGC 4 cut(s) 113, 362, 371, 615
NarI GGCGCC 1 cut(s) 1121
NciI CCSGG 1 cut(s) 303
NcoI CCATGG 1 cut(s) 703
NdeII GATC 9 cut(s) 118, 216, 386, 541, 556, 727, 809, 844, 1126
NlaIII CATG 4 cut(s) 223, 248, 707, 920
NlaIV GGNNCC 4 cut(s) 115, 558, 1017, 1122
NmeAIII GCCGAG 2 cut(s) 311, 594
NmuCI GTSAC 5 cut(s) 82, 501, 601, 672, 1029
NsiI ATGCAT 1 cut(s) 376
NspI RCATGY 1 cut(s) 920
NspV TTCGAA 2 cut(s) 130, 205
PagI TCATGA 2 cut(s) 219, 244
PciI ACATGT 1 cut(s) 916
PcsI WCGNNNNNNNCGW 2 cut(s) 127, 833
PctI GAATGC 1 cut(s) 201
PdmI GAANNNNTTC 1 cut(s) 525
PfeI GAWTC 2 cut(s) 127, 1096
PkrI GCNGC 8 cut(s) 7, 327, 355, 358, 435, 553, 765, 768
Ple19I CGATCG 1 cut(s) 121
PleI GAGTC 2 cut(s) 719, 849
PluTI GGCGCC 1 cut(s) 1124
PpsI GAGTC 2 cut(s) 719, 849
PscI ACATGT 1 cut(s) 916
PspN4I GGNNCC 4 cut(s) 115, 558, 1017, 1122
PspPI GGNCC 1 cut(s) 72
PsuI RGATCY 2 cut(s) 556, 809
PvuI CGATCG 1 cut(s) 121
RsaI GTAC 6 cut(s) 56, 393, 921, 972, 1017, 1133
RsaNI GTAC 6 cut(s) 55, 392, 920, 971, 1016, 1132
RseI CAYNNNNRTG 2 cut(s) 702, 723
SalI GTCGAC 1 cut(s) 751
SaqAI TTAA 4 cut(s) 444, 480, 567, 987
SatI GCNGC 8 cut(s) 6, 326, 354, 357, 434, 552, 764, 767
Sau3AI GATC 9 cut(s) 118, 216, 386, 541, 556, 727, 809, 844, 1126
Sau96I GGNCC 1 cut(s) 72
ScaI AGTACT 1 cut(s) 393
SchI GAGTC 2 cut(s) 720, 849
ScrFI CCNGG 1 cut(s) 303
SduI GDGCHC 1 cut(s) 640
SfaNI GCATC 2 cut(s) 383, 925
SfcI CTRYAG 1 cut(s) 516
SfoI GGCGCC 1 cut(s) 1122
SfuI TTCGAA 2 cut(s) 130, 205
SmiMI CAYNNNNRTG 2 cut(s) 702, 723
Sse9I AATT 4 cut(s) 475, 592, 654, 862
SsiI CCGC 5 cut(s) 6, 354, 357, 554, 1081
SspDI GGCGCC 1 cut(s) 1120
SspI AATATT 1 cut(s) 646
SspMI CTAG 3 cut(s) 170, 210, 975
StyD4I CCNGG 1 cut(s) 301
StyI CCWWGG 1 cut(s) 703
TaaI ACNGT 3 cut(s) 80, 449, 1035
TaiI ACGT 2 cut(s) 830, 984
TaqI TCGA 4 cut(s) 130, 205, 723, 752
TasI AATT 4 cut(s) 475, 592, 654, 862
TatI WGTACW 3 cut(s) 391, 919, 1131
TauI GCSGC 3 cut(s) 8, 356, 359
TfiI GAWTC 2 cut(s) 127, 1096
Tru1I TTAA 4 cut(s) 444, 480, 567, 987
Tru9I TTAA 4 cut(s) 444, 480, 567, 987
TseFI GTSAC 5 cut(s) 82, 501, 601, 672, 1029
TseI GCWGC 5 cut(s) 325, 433, 551, 763, 766
Tsp45I GTSAC 5 cut(s) 82, 501, 601, 672, 1029
TspDTI ATGAA 4 cut(s) 236, 261, 518, 647
TspGWI ACGGA 3 cut(s) 590, 617, 1068
XapI RAATTY 1 cut(s) 592
XceI RCATGY 1 cut(s) 920
XmiI GTMKAC 1 cut(s) 752
XmnI GAANNNNTTC 1 cut(s) 525
XspI CTAG 3 cut(s) 170, 210, 975
ZrmI AGTACT 1 cut(s) 393
Zsp2I ATGCAT 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.