Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0010263

Physical Location & Seq

Genomic Coordinates Reverse (-)

38903975 .. 38906261

Gene Structure 2287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g39180.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1503 bp

ATGGCAATTGCAGCAACAAGAACAAACACCTCATCATCATCAACAATGAGCCACGACGACTCCAACAAGGCCGATGATCATGATCATGAGCATGATGAGCATGTTGATGAGCATGAGCACGACATGGTGATGCCGGGCTTTCGCTTCCACCCTACTGAGGAGGAACTTGTAGAGTTCTACCTACGCCGTAAGGTTGAGGGCAAGCGCTTCAATGTCGAACTCATTACTTTTCTCGATCTTTATCGCTATGACCCTTGGGAACTTCCAGCTATGGCAGCAATCGGGGAGAAGGAATGGTTCTTTTATGTACCAAGAGACCGCAAGTACCGCAACGGCGATAGGCCAAACCGGGTAACTACTTCTGGGTATTGGAAGGCAACTGGAGCCGACCGCATGATCCGAAGCGAAAACTTCCGCTCAATCGGCCTCAAGAAAACCCTAGTCTTTTACTCTGGGAAAGCTCCCAAGGGTCTTCGAAGTAGTTGGATCATGAACGAATATCGCTTGCCTCATCATGAAACTGAACGATATCAAAAGGGAGAAATATCGCTATGCCGAGTACACAAGAGAGCGGGAGTTGAAGACCACCCATCACTCCCTCGTTGTCTCCCAGCATCCAGGGCATCCACGTCTGGATCATCAGTACTAGTAGATCAATCGACGACCATGTCAGACAATAAAAAGCAGCACACCAATAATACCAACACAATTGATACTGTGATGGAAAAAATCCAAGCTTTCAATGAAGGCCAATCGCAGCAAATTCATCATGATCATGAACATCAGATGGATCAAAAGATTAGCATCGAAACTGAAGGTAGTAGCGGAAATTCTGATGTGACAACAGTTTTGGGACTTTCCAAGTATAAGGTGTACCATCACGGCCACCACCAGCCTCACAACATTGAGAGTAGTACTAGTACCGCTGCCGCACTTGGACAACTGGGTACTCCAACTCATCCTGTGGATCAGGAAGAAGGGATGCCTGCTTTCTTGCACCAATTAACAAACTCAAGGCAAGTTGCTGCTAATTGCTATTCGGGGATCTCAAGTACTGGCAATTCATGTGCAGCGCTCTTCACCGGTGGTTCTTCTTCTGTTTCATCTTCCAATATGAATGCAATTGATGATCTTCATAGACTTTTGAATTACCAACCTGTACACGTACAGCAGCAGGCTGCTCCCAATCATTACCAACAGCAACAATATCTACACCATCATCTAGTACAATACTATGATCATCACCATCATCCTCCTCCCCAACCCAGCAACTTTTTCTCCACAAATTTACCTGCAGCAGCGGCAGCACTATCAACCATACAGCCACAGCCGCAGCAGCAGCTCCCCCCCAACGCACTTCCAACTGCTTTCTCTGACCGCCTATGGGACTGGAATCCAATATCAGAGCCAAACCGGCCGGACTACAACAATCCGTTCAAATCGATAATAGTTCTATCGATAAACTTCTTAATTAGTTATGCTATTAGCTATCTACTCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

501

Amino Acids

56.67

Weight (kDa)

6.32

Isoelectric Point (pI)

47.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010263)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02450 AT2G02450
fragaria_vesca	FvH4_5g27330
malus_domestica	MD08G1250000.v1.1 MD15G1444700.v1.1
prunus_persica	Prupe.1G587100_v2.0.a1 Prupe.1G587100_v2.0.a1 Prupe.1G587100_v2.0.a1 Prupe.1G587100_v2.0.a1
pyrus_communis	pycom08g21660 pycom15g39180
rosa_chinensis	RchiOBHm_Chr7g0218501
rosa_laevigata	RLG00000002365
rosa_multiflora	Rmu_sc0001301.1_g000047
rosa_roxburghii	Rroxscaffold_3G00240890
rosa_rugosa	Rorug07G0177700
rosa_samantha	Rh7AG319100 Rh7BG311000 Rh7CG335900 Rh7DG318300
rosa_wichuraiana	Rw7G027170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	667
Acc36I	ACCTGC	1 cut(s)	1300
AccBSI	CCGCTC	2 cut(s)	417, 572
AclWI	GGATC	6 cut(s)	391, 494, 643, 798, 975, 1052
AcoI	YGGCCR	2 cut(s)	883, 1415
AcsI	RAATTY	3 cut(s)	762, 829, 1285
AcuI	CTGAAG	1 cut(s)	834
AfeI	AGCGCT	2 cut(s)	206, 1074
AfiI	CCNNNNNNNGG	2 cut(s)	157, 1384
AflIII	ACRYGT	1 cut(s)	1162
AgeI	ACCGGT	1 cut(s)	1082
AgsI	TTSAA	5 cut(s)	211, 581, 742, 1147, 1438
AhlI	ACTAGT	2 cut(s)	646, 917
AjiI	CACGTC	1 cut(s)	630
AjnI	CCWGG	1 cut(s)	617
AluBI	AGCT	5 cut(s)	269, 461, 737, 1342, 1488
AluI	AGCT	5 cut(s)	269, 461, 737, 1342, 1488
Alw21I	GWGCWC	1 cut(s)	120
Alw26I	GTCTC	2 cut(s)	309, 611
AlwI	GGATC	6 cut(s)	391, 494, 643, 798, 975, 1052
Aor51HI	AGCGCT	2 cut(s)	206, 1074
AoxI	GGCC	6 cut(s)	69, 341, 424, 748, 883, 1415
ApoI	RAATTY	3 cut(s)	762, 829, 1285
ArsI	GACNNNNNNTTYG	2 cut(s)	832, 864
AsiGI	ACCGGT	1 cut(s)	1082
AspLEI	GCGC	2 cut(s)	207, 1075
AsuC2I	CCSGG	2 cut(s)	135, 350
AsuHPI	GGTGA	3 cut(s)	139, 1072, 1235
AsuII	TTCGAA	1 cut(s)	475
BbsI	GAAGAC	2 cut(s)	464, 588
Bbv12I	GWGCWC	1 cut(s)	120
BccI	CCATC	6 cut(s)	598, 715, 781, 885, 1224, 1254
BceAI	ACGGC	3 cut(s)	171, 349, 898
BciT130I	CCWGG	1 cut(s)	619
BclI	TGATCA	4 cut(s)	76, 82, 772, 1237
BcnI	CCSGG	2 cut(s)	135, 350
BcoDI	GTCTC	2 cut(s)	309, 611
BcuI	ACTAGT	2 cut(s)	646, 917
BfaI	CTAG	4 cut(s)	440, 647, 918, 1223
BfmI	CTRYAG	1 cut(s)	1293
BfoI	RGCGCY	2 cut(s)	208, 1076
BfuAI	ACCTGC	1 cut(s)	1300
BglI	GCCNNNNNGGC	1 cut(s)	1414
BmcAI	AGTACT	3 cut(s)	645, 916, 1054
Bme1390I	CCNGG	3 cut(s)	135, 350, 619
BmgBI	CACGTC	1 cut(s)	630
BmiI	GGNNCC	1 cut(s)	385
BmrFI	CCNGG	3 cut(s)	135, 350, 619
BmrI	ACTGGG	1 cut(s)	953
BmsI	GCATC	5 cut(s)	120, 623, 632, 813, 972
BmuI	ACTGGG	1 cut(s)	953
BpiI	GAAGAC	2 cut(s)	464, 588
BpmI	CTGGAG	1 cut(s)	402
Bpu14I	TTCGAA	1 cut(s)	475
BpuEI	CTTGAG	3 cut(s)	413, 997, 1033
BpuMI	CCSGG	2 cut(s)	135, 350
Bsa29I	ATCGAT	2 cut(s)	1442, 1457
BsaAI	YACGTR	1 cut(s)	1165
BsaBI	GATNNNNATC	3 cut(s)	81, 240, 803
BsaI	GGTCTC	1 cut(s)	309
BsaJI	CCNNGG	3 cut(s)	254, 465, 618
BsaWI	WCCGGW	1 cut(s)	1082
BsaXI	ACNNNNNCTCC	4 cut(s)	44, 74, 1262, 1292
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 1384
Bse118I	RCCGGY	2 cut(s)	1082, 1413
Bse1I	ACTGG	4 cut(s)	385, 948, 1060, 1394
Bse8I	GATNNNNATC	3 cut(s)	81, 240, 803
BseBI	CCWGG	1 cut(s)	619
BseCI	ATCGAT	2 cut(s)	1442, 1457
BseDI	CCNNGG	3 cut(s)	254, 465, 618
BseGI	GGATG	5 cut(s)	614, 623, 958, 987, 1249
BseJI	GATNNNNATC	3 cut(s)	81, 240, 803
BseLI	CCNNNNNNNGG	2 cut(s)	157, 1384
BseMII	CTCAG	1 cut(s)	147
BseNI	ACTGG	4 cut(s)	385, 948, 1060, 1394
BseRI	GAGGAG	2 cut(s)	173, 1245
BseX3I	CGGCCG	1 cut(s)	1415
BseYI	CCCAGC	2 cut(s)	610, 1265
BsgI	GTGCAG	1 cut(s)	1089
Bsh1285I	CGRYCG	2 cut(s)	391, 1418
BshFI	GGCC	6 cut(s)	71, 343, 426, 750, 885, 1417
BshTI	ACCGGT	1 cut(s)	1082
BshVI	ATCGAT	2 cut(s)	1442, 1457
BsiEI	CGRYCG	2 cut(s)	391, 1418
BsiHKAI	GWGCWC	1 cut(s)	120
BsiSI	CCGG	5 cut(s)	134, 349, 1083, 1414, 1418
BslFI	GGGAC	2 cut(s)	867, 1400
BslI	CCNNNNNNNGG	2 cut(s)	157, 1384
BsmAI	GTCTC	2 cut(s)	309, 611
BsmFI	GGGAC	2 cut(s)	867, 1400
BsmI	GAATGC	1 cut(s)	1123
BsnI	GGCC	6 cut(s)	71, 343, 426, 750, 885, 1417
Bso31I	GGTCTC	1 cut(s)	309
Bsp119I	TTCGAA	1 cut(s)	475
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp1407I	TGTACA	1 cut(s)	1159
BspANI	GGCC	6 cut(s)	71, 343, 426, 750, 885, 1417
BspCNI	CTCAG	1 cut(s)	148
BspDI	ATCGAT	2 cut(s)	1442, 1457
BspHI	TCATGA	7 cut(s)	79, 85, 489, 514, 769, 775, 1499
BspLI	GGNNCC	1 cut(s)	385
BspMAI	CTGCAG	1 cut(s)	1297
BspMI	ACCTGC	1 cut(s)	1300
BspPI	GGATC	6 cut(s)	391, 494, 643, 798, 975, 1052
BspQI	GCTCTTC	1 cut(s)	1082
BspT104I	TTCGAA	1 cut(s)	475
BspTNI	GGTCTC	1 cut(s)	309
BsrBI	CCGCTC	2 cut(s)	417, 572
BsrFI	RCCGGY	2 cut(s)	1082, 1413
BsrGI	TGTACA	1 cut(s)	1159
BsrI	ACTGG	4 cut(s)	385, 948, 1060, 1394
BssAI	RCCGGY	2 cut(s)	1082, 1413
BssECI	CCNNGG	3 cut(s)	254, 465, 618
BssT1I	CCWWGG	2 cut(s)	254, 465
Bst2UI	CCWGG	1 cut(s)	619
Bst4CI	ACNGT	2 cut(s)	718, 847
Bst6I	CTCTTC	1 cut(s)	1082
BstAUI	TGTACA	1 cut(s)	1159
BstBAI	YACGTR	1 cut(s)	1165
BstBI	TTCGAA	1 cut(s)	475
BstC8I	GCNNGC	4 cut(s)	203, 506, 987, 1176
BstDEI	CTNAG	1 cut(s)	156
BstF5I	GGATG	5 cut(s)	614, 623, 958, 987, 1249
BstH2I	RGCGCY	2 cut(s)	208, 1076
BstHHI	GCGC	2 cut(s)	207, 1075
BstMAI	GTCTC	2 cut(s)	309, 611
BstMCI	CGRYCG	2 cut(s)	391, 1418
BstNI	CCWGG	1 cut(s)	619
BstNSI	RCATGY	1 cut(s)	104
BstSCI	CCNGG	3 cut(s)	133, 348, 617
BstSFI	CTRYAG	1 cut(s)	1293
BstV2I	GAAGAC	2 cut(s)	464, 588
BstX2I	RGATCY	1 cut(s)	1044
BstYI	RGATCY	1 cut(s)	1044
BstZI	CGGCCG	1 cut(s)	1415
Bsu15I	ATCGAT	2 cut(s)	1442, 1457
BsuRI	GGCC	6 cut(s)	71, 343, 426, 750, 885, 1417
BsuTUI	ATCGAT	2 cut(s)	1442, 1457
BtrI	CACGTC	1 cut(s)	630
BtsCI	GGATG	5 cut(s)	614, 623, 958, 987, 1249
BveI	ACCTGC	1 cut(s)	1300
Cac8I	GCNNGC	4 cut(s)	203, 506, 987, 1176
CciI	TCATGA	7 cut(s)	79, 85, 489, 514, 769, 775, 1499
CfoI	GCGC	2 cut(s)	207, 1075
Cfr10I	RCCGGY	2 cut(s)	1082, 1413
ClaI	ATCGAT	2 cut(s)	1442, 1457
CspAI	ACCGGT	1 cut(s)	1082
DdeI	CTNAG	1 cut(s)	156
DrdI	GACNNNNNNGTC	1 cut(s)	667
DseDI	GACNNNNNNGTC	1 cut(s)	667
EaeI	YGGCCR	2 cut(s)	883, 1415
EagI	CGGCCG	1 cut(s)	1415
Eam1104I	CTCTTC	1 cut(s)	1082
EarI	CTCTTC	1 cut(s)	1082
EclXI	CGGCCG	1 cut(s)	1415
Eco130I	CCWWGG	2 cut(s)	254, 465
Eco31I	GGTCTC	1 cut(s)	309
Eco32I	GATATC	1 cut(s)	530
Eco47III	AGCGCT	2 cut(s)	206, 1074
Eco52I	CGGCCG	1 cut(s)	1415
Eco57I	CTGAAG	1 cut(s)	834
EcoRII	CCWGG	1 cut(s)	617
EcoRV	GATATC	1 cut(s)	530
EcoT14I	CCWWGG	2 cut(s)	254, 465
ErhI	CCWWGG	2 cut(s)	254, 465
FaqI	GGGAC	2 cut(s)	867, 1400
FauI	CCCGC	1 cut(s)	565
FbaI	TGATCA	4 cut(s)	76, 82, 772, 1237
FokI	GGATG	5 cut(s)	601, 610, 945, 994, 1236
FspBI	CTAG	4 cut(s)	440, 647, 918, 1223
GlaI	GCGC	2 cut(s)	206, 1074
GsaI	CCCAGC	2 cut(s)	614, 1269
GsuI	CTGGAG	1 cut(s)	402
HaeII	RGCGCY	2 cut(s)	208, 1076
HaeIII	GGCC	6 cut(s)	71, 343, 426, 750, 885, 1417
HapII	CCGG	5 cut(s)	134, 349, 1083, 1414, 1418
HhaI	GCGC	2 cut(s)	207, 1075
Hin6I	GCGC	2 cut(s)	205, 1073
HinP1I	GCGC	2 cut(s)	205, 1073
HindIII	AAGCTT	1 cut(s)	735
HinfI	GANTC	2 cut(s)	59, 1393
HpaII	CCGG	5 cut(s)	134, 349, 1083, 1414, 1418
HphI	GGTGA	3 cut(s)	139, 1072, 1235
Hpy166II	GTNNAC	3 cut(s)	562, 874, 1162
Hpy188I	TCNGA	6 cut(s)	401, 673, 786, 835, 1375, 1405
Hpy8I	GTNNAC	3 cut(s)	562, 874, 1162
Hpy99I	CGWCG	2 cut(s)	59, 664
HpyAV	CCTTC	5 cut(s)	283, 367, 740, 809, 971
HpyCH4III	ACNGT	2 cut(s)	718, 847
HpyCH4IV	ACGT	2 cut(s)	629, 1164
HpyCH4V	TGCA	5 cut(s)	11, 997, 1070, 1121, 1295
HpyF3I	CTNAG	1 cut(s)	156
HpySE526I	ACGT	2 cut(s)	629, 1164
HspAI	GCGC	2 cut(s)	205, 1073
Ksp22I	TGATCA	4 cut(s)	76, 82, 772, 1237
LguI	GCTCTTC	1 cut(s)	1082
LmnI	GCTCC	4 cut(s)	383, 466, 1186, 1347
LweI	GCATC	5 cut(s)	120, 623, 632, 813, 972
MaeI	CTAG	4 cut(s)	440, 647, 918, 1223
MaeII	ACGT	2 cut(s)	629, 1164
MaeIII	GTNAC	2 cut(s)	352, 838
MbiI	CCGCTC	2 cut(s)	417, 572
MboII	GAAGA	8 cut(s)	464, 593, 986, 1069, 1083, 1086, 1098, 1124
MfeI	CAATTG	3 cut(s)	6, 708, 1122
MflI	RGATCY	1 cut(s)	1044
MhlI	GDGCHC	1 cut(s)	120
MlyI	GAGTC	1 cut(s)	53
MmeI	TCCRAC	4 cut(s)	87, 464, 977, 1385
MseI	TTAA	2 cut(s)	1004, 1469
MslI	CAYNNNNRTG	5 cut(s)	84, 90, 105, 128, 774
MspA1I	CMGCKG	2 cut(s)	926, 1301
MspI	CCGG	5 cut(s)	134, 349, 1083, 1414, 1418
MspR9I	CCNGG	3 cut(s)	135, 350, 619
MunI	CAATTG	3 cut(s)	6, 708, 1122
Mva1269I	GAATGC	1 cut(s)	1123
MvaI	CCWGG	1 cut(s)	619
NciI	CCSGG	2 cut(s)	135, 350
NlaIV	GGNNCC	1 cut(s)	385
NmeAIII	GCCGAG	1 cut(s)	581
NmuCI	GTSAC	1 cut(s)	838
NspI	RCATGY	1 cut(s)	104
NspV	TTCGAA	1 cut(s)	475
PagI	TCATGA	7 cut(s)	79, 85, 489, 514, 769, 775, 1499
PciSI	GCTCTTC	1 cut(s)	1082
PctI	GAATGC	1 cut(s)	1123
PfeI	GAWTC	1 cut(s)	1393
PflFI	GACNNNGTC	1 cut(s)	667
PinAI	ACCGGT	1 cut(s)	1082
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
Ppu21I	YACGTR	1 cut(s)	1165
Psp6I	CCWGG	1 cut(s)	617
PspFI	CCCAGC	2 cut(s)	610, 1265
PspGI	CCWGG	1 cut(s)	617
PspN4I	GGNNCC	1 cut(s)	385
PstI	CTGCAG	1 cut(s)	1297
PsuI	RGATCY	1 cut(s)	1044
PsyI	GACNNNGTC	1 cut(s)	667
RseI	CAYNNNNRTG	5 cut(s)	84, 90, 105, 128, 774
SapI	GCTCTTC	1 cut(s)	1082
SaqAI	TTAA	2 cut(s)	1004, 1469
ScaI	AGTACT	3 cut(s)	645, 916, 1054
SchI	GAGTC	1 cut(s)	53
ScrFI	CCNGG	3 cut(s)	135, 350, 619
SduI	GDGCHC	1 cut(s)	120
SfaNI	GCATC	5 cut(s)	120, 623, 632, 813, 972
SfcI	CTRYAG	1 cut(s)	1293
SfuI	TTCGAA	1 cut(s)	475
SgrAI	CRCCGGYG	1 cut(s)	1082
SmiMI	CAYNNNNRTG	5 cut(s)	84, 90, 105, 128, 774
SmlI	CTYRAG	3 cut(s)	428, 1012, 1048
SmoI	CTYRAG	3 cut(s)	428, 1012, 1048
SpeI	ACTAGT	2 cut(s)	646, 917
SspMI	CTAG	4 cut(s)	440, 647, 918, 1223
StyD4I	CCNGG	3 cut(s)	133, 348, 617
StyI	CCWWGG	2 cut(s)	254, 465
TaaI	ACNGT	2 cut(s)	718, 847
TaiI	ACGT	2 cut(s)	632, 1167
TaqI	TCGA	7 cut(s)	216, 234, 475, 659, 807, 1442, 1457
TatI	WGTACW	6 cut(s)	559, 643, 914, 1052, 1159, 1225
TauI	GCSGC	3 cut(s)	932, 1304, 1333
TfiI	GAWTC	1 cut(s)	1393
Tru1I	TTAA	2 cut(s)	1004, 1469
Tru9I	TTAA	2 cut(s)	1004, 1469
TseFI	GTSAC	1 cut(s)	838
Tsp45I	GTSAC	1 cut(s)	838
TspDTI	ATGAA	9 cut(s)	506, 531, 755, 759, 792, 1053, 1092, 1124, 1130
TspGWI	ACGGA	1 cut(s)	1422
Tth111I	GACNNNGTC	1 cut(s)	667
XapI	RAATTY	3 cut(s)	762, 829, 1285
XceI	RCATGY	1 cut(s)	104
XspI	CTAG	4 cut(s)	440, 647, 918, 1223
ZrmI	AGTACT	3 cut(s)	645, 916, 1054

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.