Rh7CG335900
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0010263
Physical Location & Seq
Reverse (-)
37494513 .. 37496794
2282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG335900.1

Sequence Viewer

Length: 1161 bp
ATGGCCGCGATTGGAGAGAAGGAGTGGTTCTTTTATGTCCCGAGAGACAGAAAGTACCGGAACGGCGACAGGCCCAACCGTGTGACCACATCTGGATACTGGAAGGCAACTGGAGCCGATCGGATGATTCGAAGCGAGAACTTCCGGTCAATCGGATTGAAGAAAACCCTAGTTTTCTACTCTGGGAAAGCCCCCAAAGGCATTCGAACTAGCTGGATCATGAACGAGTATCGCTTGCCCCATCATGAAACTGAACGATATCAAAAGGGAGAAATATCCCTTTGCCGAGTTTACAAGAGACCCGGAGTGGAAGACCACCCGTCGCTGCCTCGTTCTCTGCCGTCATCCAGAGCCGCCGCTAATGCTAATAATGCATCCACATCAAGATCAGTACTGGCTCAGTCTTCCTCCTCGTCCACCTTAGACAAAAAGCAGCACAGCATTAACAGTAGTTTGATGGAAAAACTCCAAGCTAATTTTAACTTCAATGGAGGGTCGCCGTCACTTGGCCAATCTGTAGAACAACTTCATCATCATCAAGATCAGGTGGCTGCGGATCCAAAGATTAACGAAACGGAAGGAAGTAGCGGGAATTCGGATGTGACAAGCACGCTTGGCGTTGGCCTCCGTAGTAGTGCTCCTAATATTCCTCCAATTCATCTTCCATCATCGTCACTCGGGCTACAACCTCATCACCATCACCATGGAGGAGTCCTACACCTCGATGATCAGGCCGAACAAGAGGGGATGTCGACATTCTTGCAGCAGCAGCAGCAGCACCACCACTCAAAGCCACAATCAATGCTGTTCGCCGGATCTTCTGTTTCATCCACGTCTAACCCGATTGATGATCTTCAAAGACTCTTGAATTACCAACAGCAGCAAGCAGTTTCCAACATTGCCAATCAACAACAAGCTCTACATGTACAACAATACTATGATGCTCATAATCATAATCACCACCACCACCACCAAGTACCTAGCAACGTGGTTAACCATTTCTCCAGTCCTTTCCCATTGGTACCTCCTCCATCGTCACAGTCTCAGCTCTCCCCCAACGGACTTCCAATAACTGCTTTCTCCGACCGCCTTTGGGACTGGAATCCTATCTCAGAACCAAACAGGGCGCCCGATCAGTACAACACCAATCCATTCAAGTAA

Protein Analysis

386

Amino Acids

43.16

Weight (kDa)

9.03

Isoelectric Point (pI)

58.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 4 - 79 4e-23 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1021
AccB1I GGYRCC 2 cut(s) 1021, 1126
AccI GTMKAC 1 cut(s) 752
AccII CGCG 1 cut(s) 8
AciI CCGC 6 cut(s) 6, 354, 357, 554, 588, 1087
AclWI GGATC 4 cut(s) 224, 551, 564, 823
AcoI YGGCCR 2 cut(s) 3, 508
AcsI RAATTY 1 cut(s) 592
AcyI GRCGYC 1 cut(s) 1127
AfaI GTAC 6 cut(s) 56, 393, 927, 978, 1023, 1139
AfiI CCNNNNNNNGG 2 cut(s) 506, 1093
AflIII ACRYGT 1 cut(s) 922
AgsI TTSAA 5 cut(s) 160, 487, 857, 868, 1156
AhdI GACNNNNNGTC 1 cut(s) 319
AjiI CACGTC 1 cut(s) 834
AluBI AGCT 4 cut(s) 213, 473, 917, 1048
AluI AGCT 4 cut(s) 213, 473, 917, 1048
Alw21I GWGCWC 1 cut(s) 640
Alw26I GTCTC 3 cut(s) 39, 292, 1047
AlwI GGATC 4 cut(s) 224, 551, 564, 823
Ama87I CYCGRG 2 cut(s) 40, 677
AoxI GGCC 5 cut(s) 3, 71, 508, 622, 732
ApeKI GCWGC 9 cut(s) 325, 433, 551, 763, 766, 769, 772, 775, 880
ApoI RAATTY 1 cut(s) 592
Asp700I GAANNNNTTC 1 cut(s) 525
Asp718I GGTACC 1 cut(s) 1021
AspLEI GCGC 1 cut(s) 1129
AspS9I GGNCC 1 cut(s) 72
AsuC2I CCSGG 1 cut(s) 303
AsuHPI GGTGA 3 cut(s) 686, 692, 950
AsuII TTCGAA 2 cut(s) 130, 205
AvaI CYCGRG 2 cut(s) 40, 677
BalI TGGCCA 1 cut(s) 510
BamHI GGATCC 1 cut(s) 556
BanI GGYRCC 2 cut(s) 1021, 1126
BarI GAAGNNNNNNTAC 2 cut(s) 510, 542
BbsI GAAGAC 2 cut(s) 318, 396
Bbv12I GWGCWC 1 cut(s) 640
BbvI GCAGC 9 cut(s) 312, 445, 538, 775, 778, 781, 784, 787, 892
BccI CCATC 5 cut(s) 249, 451, 673, 705, 1039
BceAI ACGGC 3 cut(s) 79, 325, 484
BcgI CGANNNNNNTGC 2 cut(s) 742, 776
BciVI GTATCC 1 cut(s) 89
BclI TGATCA 1 cut(s) 727
BcnI CCSGG 1 cut(s) 303
BcoDI GTCTC 3 cut(s) 39, 292, 1047
BfaI CTAG 3 cut(s) 170, 210, 981
BfmI CTRYAG 1 cut(s) 516
BfoI RGCGCY 1 cut(s) 1130
BfuI GTATCC 1 cut(s) 89
BmcAI AGTACT 1 cut(s) 393
Bme1390I CCNGG 1 cut(s) 303
BmeRI GACNNNNNGTC 1 cut(s) 319
BmeT110I CYCGRG 2 cut(s) 40, 677
BmgBI CACGTC 1 cut(s) 834
BmgT120I GGNCC 1 cut(s) 72
BmiI GGNNCC 4 cut(s) 115, 558, 1023, 1128
BmrFI CCNGG 1 cut(s) 303
BmsI GCATC 2 cut(s) 383, 931
BpiI GAAGAC 2 cut(s) 318, 396
BpmI CTGGAG 2 cut(s) 132, 988
Bpu14I TTCGAA 2 cut(s) 130, 205
BpuMI CCSGG 1 cut(s) 303
BsaHI GRCGYC 1 cut(s) 1127
BsaI GGTCTC 1 cut(s) 292
BsaJI CCNNGG 1 cut(s) 703
BsaWI WCCGGW 2 cut(s) 57, 144
BsaXI ACNNNNNCTCC 2 cut(s) 986, 1016
Bsc4I CCNNNNNNNGG 2 cut(s) 506, 1093
Bse1I ACTGG 5 cut(s) 104, 115, 399, 1005, 1103
Bse3DI GCAATG 1 cut(s) 897
BseDI CCNNGG 1 cut(s) 703
BseGI GGATG 6 cut(s) 129, 344, 374, 604, 753, 827
BseLI CCNNNNNNNGG 2 cut(s) 506, 1093
BseMI GCAATG 1 cut(s) 897
BseMII CTCAG 3 cut(s) 413, 1058, 1125
BseNI ACTGG 5 cut(s) 104, 115, 399, 1005, 1103
BseRI GAGGAG 3 cut(s) 400, 723, 1017
BseXI GCAGC 9 cut(s) 312, 445, 538, 775, 778, 781, 784, 787, 892
Bsh1236I CGCG 1 cut(s) 8
Bsh1285I CGRYCG 2 cut(s) 121, 1087
BshFI GGCC 5 cut(s) 5, 73, 510, 624, 734
BshNI GGYRCC 2 cut(s) 1021, 1126
BsiEI CGRYCG 2 cut(s) 121, 1087
BsiHKAI GWGCWC 1 cut(s) 640
BsiHKCI CYCGRG 2 cut(s) 40, 677
BsiSI CCGG 4 cut(s) 58, 145, 303, 813
BslFI GGGAC 2 cut(s) 23, 1109
BslI CCNNNNNNNGG 2 cut(s) 506, 1093
BsmAI GTCTC 3 cut(s) 39, 292, 1047
BsmFI GGGAC 2 cut(s) 23, 1109
BsmI GAATGC 1 cut(s) 201
BsnI GGCC 5 cut(s) 5, 73, 510, 624, 734
Bso31I GGTCTC 1 cut(s) 292
BsoBI CYCGRG 2 cut(s) 40, 677
Bsp119I TTCGAA 2 cut(s) 130, 205
Bsp1286I GDGCHC 1 cut(s) 640
Bsp1407I TGTACA 1 cut(s) 925
Bsp143I GATC 9 cut(s) 118, 216, 386, 541, 556, 727, 815, 850, 1132
Bsp19I CCATGG 1 cut(s) 703
BspACI CCGC 6 cut(s) 6, 354, 357, 554, 588, 1087
BspANI GGCC 5 cut(s) 5, 73, 510, 624, 734
BspCNI CTCAG 3 cut(s) 412, 1057, 1124
BspFNI CGCG 1 cut(s) 8
BspHI TCATGA 2 cut(s) 219, 244
BspLI GGNNCC 4 cut(s) 115, 558, 1023, 1128
BspPI GGATC 4 cut(s) 224, 551, 564, 823
BspT104I TTCGAA 2 cut(s) 130, 205
BspT107I GGYRCC 2 cut(s) 1021, 1126
BspTNI GGTCTC 1 cut(s) 292
BsrDI GCAATG 1 cut(s) 897
BsrGI TGTACA 1 cut(s) 925
BsrI ACTGG 5 cut(s) 104, 115, 399, 1005, 1103
BssECI CCNNGG 1 cut(s) 703
BssMI GATC 9 cut(s) 118, 216, 386, 541, 556, 727, 815, 850, 1132
BssNI GRCGYC 1 cut(s) 1127
BssT1I CCWWGG 1 cut(s) 703
Bst4CI ACNGT 3 cut(s) 80, 449, 1041
BstACI GRCGYC 1 cut(s) 1127
BstAUI TGTACA 1 cut(s) 925
BstBI TTCGAA 2 cut(s) 130, 205
BstC8I GCNNGC 3 cut(s) 236, 611, 885
BstDEI CTNAG 4 cut(s) 399, 421, 1044, 1111
BstDSI CCRYGG 1 cut(s) 703
BstF5I GGATG 6 cut(s) 129, 344, 374, 604, 753, 827
BstFNI CGCG 1 cut(s) 8
BstH2I RGCGCY 1 cut(s) 1130
BstHHI GCGC 1 cut(s) 1129
BstKTI GATC 9 cut(s) 121, 219, 389, 544, 559, 730, 818, 853, 1135
BstMAI GTCTC 3 cut(s) 39, 292, 1047
BstMBI GATC 9 cut(s) 118, 216, 386, 541, 556, 727, 815, 850, 1132
BstMCI CGRYCG 2 cut(s) 121, 1087
BstMWI GCNNNNNNNGC 7 cut(s) 113, 362, 371, 615, 769, 772, 775
BstNSI RCATGY 1 cut(s) 926
BstSCI CCNGG 1 cut(s) 301
BstSFI CTRYAG 1 cut(s) 516
BstUI CGCG 1 cut(s) 8
BstV1I GCAGC 9 cut(s) 312, 445, 538, 775, 778, 781, 784, 787, 892
BstV2I GAAGAC 2 cut(s) 318, 396
BstX2I RGATCY 2 cut(s) 556, 815
BstXI CCANNNNNNTGG 1 cut(s) 704
BstYI RGATCY 2 cut(s) 556, 815
BsuI GTATCC 1 cut(s) 89
BsuRI GGCC 5 cut(s) 5, 73, 510, 624, 734
BtgI CCRYGG 1 cut(s) 703
BtrI CACGTC 1 cut(s) 834
BtsCI GGATG 6 cut(s) 129, 344, 374, 604, 753, 827
Cac8I GCNNGC 3 cut(s) 236, 611, 885
CciI TCATGA 2 cut(s) 219, 244
CfoI GCGC 1 cut(s) 1129
Cfr13I GGNCC 1 cut(s) 72
Csp6I GTAC 6 cut(s) 55, 392, 926, 977, 1022, 1138
CviAII CATG 4 cut(s) 220, 245, 704, 923
CviQI GTAC 6 cut(s) 55, 392, 926, 977, 1022, 1138
DdeI CTNAG 4 cut(s) 399, 421, 1044, 1111
DinI GGCGCC 1 cut(s) 1128
DpnI GATC 9 cut(s) 120, 218, 388, 543, 558, 729, 817, 852, 1134
DpnII GATC 9 cut(s) 118, 216, 386, 541, 556, 727, 815, 850, 1132
DriI GACNNNNNGTC 1 cut(s) 319
EaeI YGGCCR 2 cut(s) 3, 508
Eam1105I GACNNNNNGTC 1 cut(s) 319
Eco130I CCWWGG 1 cut(s) 703
Eco31I GGTCTC 1 cut(s) 292
Eco32I GATATC 1 cut(s) 260
Eco88I CYCGRG 2 cut(s) 40, 677
EcoRI GAATTC 1 cut(s) 592
EcoRV GATATC 1 cut(s) 260
EcoT14I CCWWGG 1 cut(s) 703
EcoT22I ATGCAT 1 cut(s) 376
EgeI GGCGCC 1 cut(s) 1128
EheI GGCGCC 1 cut(s) 1128
ErhI CCWWGG 1 cut(s) 703
FaeI CATG 4 cut(s) 223, 248, 707, 926
FaiI YATR 8 cut(s) 36, 221, 246, 705, 924, 939, 948, 954
FaqI GGGAC 2 cut(s) 23, 1109
FatI CATG 4 cut(s) 219, 244, 703, 922
FauI CCCGC 1 cut(s) 581
FbaI TGATCA 1 cut(s) 727
FblI GTMKAC 1 cut(s) 752
FokI GGATG 6 cut(s) 136, 331, 361, 611, 760, 814
FspBI CTAG 3 cut(s) 170, 210, 981
GlaI GCGC 1 cut(s) 1128
GsuI CTGGAG 2 cut(s) 132, 988
HaeII RGCGCY 1 cut(s) 1130
HaeIII GGCC 5 cut(s) 5, 73, 510, 624, 734
HapII CCGG 4 cut(s) 58, 145, 303, 813
HhaI GCGC 1 cut(s) 1129
Hin1I GRCGYC 1 cut(s) 1127
Hin1II CATG 4 cut(s) 223, 248, 707, 926
Hin6I GCGC 1 cut(s) 1127
HinP1I GCGC 1 cut(s) 1127
HincII GTYRAC 2 cut(s) 753, 994
HindII GTYRAC 2 cut(s) 753, 994
HinfI GANTC 4 cut(s) 127, 711, 861, 1102
HpaI GTTAAC 1 cut(s) 994
HpaII CCGG 4 cut(s) 58, 145, 303, 813
HphI GGTGA 3 cut(s) 686, 692, 950
Hpy166II GTNNAC 4 cut(s) 292, 417, 753, 994
Hpy188I TCNGA 5 cut(s) 123, 155, 598, 1084, 1114
Hpy188III TCNNGA 8 cut(s) 40, 93, 220, 245, 348, 384, 539, 865
Hpy8I GTNNAC 4 cut(s) 292, 417, 753, 994
Hpy99I CGWCG 1 cut(s) 325
HpyAV CCTTC 3 cut(s) 13, 97, 572
HpyCH4III ACNGT 3 cut(s) 80, 449, 1041
HpyCH4IV ACGT 2 cut(s) 833, 987
HpyCH4V TGCA 2 cut(s) 374, 763
HpyF10VI GCNNNNNNNGC 7 cut(s) 113, 362, 371, 615, 769, 772, 775
HpyF3I CTNAG 4 cut(s) 399, 421, 1044, 1111
HpySE526I ACGT 2 cut(s) 833, 987
Hsp92I GRCGYC 1 cut(s) 1127
Hsp92II CATG 4 cut(s) 223, 248, 707, 926
HspAI GCGC 1 cut(s) 1127
KasI GGCGCC 1 cut(s) 1126
KpnI GGTACC 1 cut(s) 1025
Ksp22I TGATCA 1 cut(s) 727
KspAI GTTAAC 1 cut(s) 994
Kzo9I GATC 9 cut(s) 118, 216, 386, 541, 556, 727, 815, 850, 1132
LmnI GCTCC 2 cut(s) 113, 643
Lsp1109I GCAGC 9 cut(s) 312, 445, 538, 775, 778, 781, 784, 787, 892
LweI GCATC 2 cut(s) 383, 931
MaeI CTAG 3 cut(s) 170, 210, 981
MaeII ACGT 2 cut(s) 833, 987
MaeIII GTNAC 5 cut(s) 82, 501, 601, 672, 1035
MalI GATC 9 cut(s) 120, 218, 388, 543, 558, 729, 817, 852, 1134
MboI GATC 9 cut(s) 118, 216, 386, 541, 556, 727, 815, 850, 1132
MboII GAAGA 6 cut(s) 172, 323, 396, 653, 810, 845
MflI RGATCY 2 cut(s) 556, 815
MhlI GDGCHC 1 cut(s) 640
MlsI TGGCCA 1 cut(s) 510
MluCI AATT 4 cut(s) 475, 592, 654, 868
MluNI TGGCCA 1 cut(s) 510
Mly113I GGCGCC 1 cut(s) 1127
MlyI GAGTC 2 cut(s) 720, 855
MmeI TCCRAC 2 cut(s) 918, 1107
Mox20I TGGCCA 1 cut(s) 510
Mph1103I ATGCAT 1 cut(s) 376
MroXI GAANNNNTTC 1 cut(s) 525
MscI TGGCCA 1 cut(s) 510
MseI TTAA 4 cut(s) 444, 480, 567, 993
MslI CAYNNNNRTG 2 cut(s) 702, 723
Msp20I TGGCCA 1 cut(s) 510
MspI CCGG 4 cut(s) 58, 145, 303, 813
MspR9I CCNGG 1 cut(s) 303
Mva1269I GAATGC 1 cut(s) 201
MvnI CGCG 1 cut(s) 8
MwoI GCNNNNNNNGC 7 cut(s) 113, 362, 371, 615, 769, 772, 775
NarI GGCGCC 1 cut(s) 1127
NciI CCSGG 1 cut(s) 303
NcoI CCATGG 1 cut(s) 703
NdeII GATC 9 cut(s) 118, 216, 386, 541, 556, 727, 815, 850, 1132
NlaIII CATG 4 cut(s) 223, 248, 707, 926
NlaIV GGNNCC 4 cut(s) 115, 558, 1023, 1128
NmeAIII GCCGAG 1 cut(s) 311
NmuCI GTSAC 5 cut(s) 82, 501, 601, 672, 1035
NsiI ATGCAT 1 cut(s) 376
NspI RCATGY 1 cut(s) 926
NspV TTCGAA 2 cut(s) 130, 205
PagI TCATGA 2 cut(s) 219, 244
PciI ACATGT 1 cut(s) 922
PcsI WCGNNNNNNNCGW 2 cut(s) 127, 839
PctI GAATGC 1 cut(s) 201
PdmI GAANNNNTTC 1 cut(s) 525
PfeI GAWTC 2 cut(s) 127, 1102
Ple19I CGATCG 1 cut(s) 121
PleI GAGTC 2 cut(s) 719, 855
PluTI GGCGCC 1 cut(s) 1130
PpsI GAGTC 2 cut(s) 719, 855
PscI ACATGT 1 cut(s) 922
PspN4I GGNNCC 4 cut(s) 115, 558, 1023, 1128
PspPI GGNCC 1 cut(s) 72
PsuI RGATCY 2 cut(s) 556, 815
PvuI CGATCG 1 cut(s) 121
RsaI GTAC 6 cut(s) 56, 393, 927, 978, 1023, 1139
RsaNI GTAC 6 cut(s) 55, 392, 926, 977, 1022, 1138
RseI CAYNNNNRTG 2 cut(s) 702, 723
SalI GTCGAC 1 cut(s) 751
SaqAI TTAA 4 cut(s) 444, 480, 567, 993
Sau3AI GATC 9 cut(s) 118, 216, 386, 541, 556, 727, 815, 850, 1132
Sau96I GGNCC 1 cut(s) 72
ScaI AGTACT 1 cut(s) 393
SchI GAGTC 2 cut(s) 720, 855
ScrFI CCNGG 1 cut(s) 303
SduI GDGCHC 1 cut(s) 640
SfaNI GCATC 2 cut(s) 383, 931
SfcI CTRYAG 1 cut(s) 516
SfoI GGCGCC 1 cut(s) 1128
SfuI TTCGAA 2 cut(s) 130, 205
SmiMI CAYNNNNRTG 2 cut(s) 702, 723
Sse9I AATT 4 cut(s) 475, 592, 654, 868
SsiI CCGC 6 cut(s) 6, 354, 357, 554, 588, 1087
SspDI GGCGCC 1 cut(s) 1126
SspI AATATT 1 cut(s) 646
SspMI CTAG 3 cut(s) 170, 210, 981
StyD4I CCNGG 1 cut(s) 301
StyI CCWWGG 1 cut(s) 703
TaaI ACNGT 3 cut(s) 80, 449, 1041
TaiI ACGT 2 cut(s) 836, 990
TaqI TCGA 4 cut(s) 130, 205, 723, 752
TasI AATT 4 cut(s) 475, 592, 654, 868
TatI WGTACW 3 cut(s) 391, 925, 1137
TauI GCSGC 3 cut(s) 8, 356, 359
TfiI GAWTC 2 cut(s) 127, 1102
Tru1I TTAA 4 cut(s) 444, 480, 567, 993
Tru9I TTAA 4 cut(s) 444, 480, 567, 993
TseFI GTSAC 5 cut(s) 82, 501, 601, 672, 1035
TseI GCWGC 9 cut(s) 325, 433, 551, 763, 766, 769, 772, 775, 880
Tsp45I GTSAC 5 cut(s) 82, 501, 601, 672, 1035
TspDTI ATGAA 5 cut(s) 236, 261, 518, 647, 816
TspGWI ACGGA 3 cut(s) 590, 617, 1074
XapI RAATTY 1 cut(s) 592
XceI RCATGY 1 cut(s) 926
XmiI GTMKAC 1 cut(s) 752
XmnI GAANNNNTTC 1 cut(s) 525
XspI CTAG 3 cut(s) 170, 210, 981
ZrmI AGTACT 1 cut(s) 393
Zsp2I ATGCAT 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.