FvH4_5g27351

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0008685
Physical Location & Seq
Reverse (-)
18607048 .. 18609978
2931 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g27351.t1

Sequence Viewer

Length: 684 bp
ATGGGGGCGAAGGCGAAAAAGGCCATGAAAAAGCAACTGAGCAAAGCAGTCTCTGCTTCTGCTCAGAAAGCGCTTTCTGCTTCTTCTGCTCAAAAACCAGTTCCTACTTCCTCTACTGCTGCTCCTGATTTCTTGCCATTGGAAGGCGGTCCTGCACGTAAGCTCCCAGAAGAGAAGCTTAAGGAAGATGTTGCGAGGGTTGTGTACATCAGTCGGATACCACACGGCTTCTATGAAACTGAAATGCAAGGGTTTTTTGGGCAGTTTGGTGTAATCAACAGATTAAGAATCGTACGCAACAAAAAGACAGGAAAGTCAAAGCATTTTGGCTTCATAGAGTTTGAGGACCCAGGGGTGGCCAAAATTGTAGCTGAAACTATGCATAATTACTTGTTGTTCGAATGCCTTCTGCAAACCAAACTTATTCCTCCACAGGAAGTTCACCCGAAGTTGTGGAAGAATAGCAAAATCCGAGCCAAACCCCTGAACTGGGTTCAAATTGAGCGCAAGAGGCATGACAAGGAAAGGACAGCTGAAGAGCACAAAAAGCTGGTGGAGAAAATTAAGAAGAGAGATCTGAAGCGTCAAAAGAGAATTGAGGCTGCTGGTATTGAGTACAAGTGCCCAGAAATTATCACTAATGATCAGCCTGCTCCAAAGAAGAAGAAGTTGCGTCTAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

228

Amino Acids

25.92

Weight (kDa)

10.09

Isoelectric Point (pI)

49.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 68 - 134 5.1e-12 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 313
AciI CCGC 1 cut(s) 147
AcoI YGGCCR 1 cut(s) 357
AcuI CTGAAG 2 cut(s) 555, 599
AfaI GTAC 3 cut(s) 206, 294, 617
AfeI AGCGCT 1 cut(s) 72
AfiI CCNNNNNNNGG 4 cut(s) 143, 355, 489, 490
AflII CTTAAG 1 cut(s) 179
AgsI TTSAA 1 cut(s) 497
AjnI CCWGG 1 cut(s) 349
AluBI AGCT 5 cut(s) 163, 178, 371, 533, 550
AluI AGCT 5 cut(s) 163, 178, 371, 533, 550
Alw21I GWGCWC 1 cut(s) 543
Alw26I GTCTC 1 cut(s) 55
AlwNI CAGNNNCTG 1 cut(s) 53
Aor51HI AGCGCT 1 cut(s) 72
AoxI GGCC 2 cut(s) 21, 357
ApeKI GCWGC 2 cut(s) 119, 602
Asp700I GAANNNNTTC 1 cut(s) 405
AspLEI GCGC 2 cut(s) 73, 507
AspS9I GGNCC 2 cut(s) 149, 346
AsuHPI GGTGA 1 cut(s) 434
AsuII TTCGAA 1 cut(s) 399
AvaII GGWCC 2 cut(s) 149, 346
BaeGI GKGCMC 1 cut(s) 626
BalI TGGCCA 1 cut(s) 359
Bbv12I GWGCWC 1 cut(s) 543
BbvI GCAGC 2 cut(s) 106, 589
BceAI ACGGC 1 cut(s) 241
BciT130I CCWGG 1 cut(s) 351
BciVI GTATCC 1 cut(s) 210
BclI TGATCA 1 cut(s) 643
BcoDI GTCTC 1 cut(s) 55
BfoI RGCGCY 1 cut(s) 74
BfrI CTTAAG 1 cut(s) 179
BfuI GTATCC 1 cut(s) 210
BglII AGATCT 1 cut(s) 574
BisI GCNGC 2 cut(s) 120, 603
BlsI GCNGC 2 cut(s) 121, 604
Bme1390I CCNGG 1 cut(s) 351
Bme18I GGWCC 2 cut(s) 149, 346
BmgT120I GGNCC 2 cut(s) 149, 346
BmiI GGNNCC 1 cut(s) 348
BmrFI CCNGG 1 cut(s) 351
BmrI ACTGGG 1 cut(s) 499
BmuI ACTGGG 1 cut(s) 499
Bpu14I TTCGAA 1 cut(s) 399
BsaAI YACGTR 1 cut(s) 158
BsaJI CCNNGG 2 cut(s) 349, 350
BsaXI ACNNNNNCTCC 4 cut(s) 106, 136, 147, 177
Bsc4I CCNNNNNNNGG 4 cut(s) 143, 355, 489, 490
Bse1I ACTGG 2 cut(s) 98, 494
BseBI CCWGG 1 cut(s) 351
BseDI CCNNGG 2 cut(s) 349, 350
BseLI CCNNNNNNNGG 4 cut(s) 143, 355, 489, 490
BseMII CTCAG 2 cut(s) 29, 77
BseNI ACTGG 2 cut(s) 98, 494
BseSI GKGCMC 1 cut(s) 626
BseXI GCAGC 2 cut(s) 106, 589
BsgI GTGCAG 1 cut(s) 138
BshFI GGCC 2 cut(s) 23, 359
BsiHKAI GWGCWC 1 cut(s) 543
BsiWI CGTACG 1 cut(s) 292
BslI CCNNNNNNNGG 4 cut(s) 143, 355, 489, 490
BsmAI GTCTC 1 cut(s) 55
BsmI GAATGC 1 cut(s) 407
BsnI GGCC 2 cut(s) 23, 359
Bsp119I TTCGAA 1 cut(s) 399
Bsp1286I GDGCHC 2 cut(s) 543, 626
Bsp1407I TGTACA 1 cut(s) 204
Bsp143I GATC 2 cut(s) 574, 643
BspACI CCGC 1 cut(s) 147
BspANI GGCC 2 cut(s) 23, 359
BspCNI CTCAG 2 cut(s) 30, 76
BspLI GGNNCC 1 cut(s) 348
BspQI GCTCTTC 1 cut(s) 531
BspT104I TTCGAA 1 cut(s) 399
BspTI CTTAAG 1 cut(s) 179
BsrGI TGTACA 1 cut(s) 204
BsrI ACTGG 2 cut(s) 98, 494
BssECI CCNNGG 2 cut(s) 349, 350
BssMI GATC 2 cut(s) 574, 643
Bst2UI CCWGG 1 cut(s) 351
Bst6I CTCTTC 3 cut(s) 165, 531, 563
BstAFI CTTAAG 1 cut(s) 179
BstAPI GCANNNNNTGC 1 cut(s) 53
BstAUI TGTACA 1 cut(s) 204
BstBAI YACGTR 1 cut(s) 158
BstBI TTCGAA 1 cut(s) 399
BstC8I GCNNGC 1 cut(s) 651
BstDEI CTNAG 2 cut(s) 38, 63
BstH2I RGCGCY 1 cut(s) 74
BstHHI GCGC 2 cut(s) 73, 507
BstKTI GATC 2 cut(s) 577, 646
BstMAI GTCTC 1 cut(s) 55
BstMBI GATC 2 cut(s) 574, 643
BstMWI GCNNNNNNNGC 7 cut(s) 20, 53, 68, 77, 86, 511, 547
BstNI CCWGG 1 cut(s) 351
BstSCI CCNGG 1 cut(s) 349
BstSLI GKGCMC 1 cut(s) 626
BstV1I GCAGC 2 cut(s) 106, 589
BstX2I RGATCY 1 cut(s) 574
BstYI RGATCY 1 cut(s) 574
BsuI GTATCC 1 cut(s) 210
BsuRI GGCC 2 cut(s) 23, 359
Cac8I GCNNGC 1 cut(s) 651
CaiI CAGNNNCTG 1 cut(s) 53
CfoI GCGC 2 cut(s) 73, 507
Cfr13I GGNCC 2 cut(s) 149, 346
CseI GACGC 2 cut(s) 572, 662
Csp6I GTAC 3 cut(s) 205, 293, 616
CviAII CATG 2 cut(s) 25, 515
CviQI GTAC 3 cut(s) 205, 293, 616
DdeI CTNAG 2 cut(s) 38, 63
DpnI GATC 2 cut(s) 576, 645
DpnII GATC 2 cut(s) 574, 643
DrdI GACNNNNNNGTC 1 cut(s) 313
DseDI GACNNNNNNGTC 1 cut(s) 313
EaeI YGGCCR 1 cut(s) 357
Eam1104I CTCTTC 3 cut(s) 165, 531, 563
EarI CTCTTC 3 cut(s) 165, 531, 563
Eco47I GGWCC 2 cut(s) 149, 346
Eco47III AGCGCT 1 cut(s) 72
Eco57I CTGAAG 2 cut(s) 555, 599
EcoO109I RGGNCCY 1 cut(s) 346
EcoRII CCWGG 1 cut(s) 349
EcoT22I ATGCAT 1 cut(s) 384
FaeI CATG 2 cut(s) 28, 518
FaiI YATR 6 cut(s) 26, 234, 335, 380, 384, 516
FalI AAGNNNNNCTT 2 cut(s) 162, 194
FatI CATG 2 cut(s) 24, 514
FbaI TGATCA 1 cut(s) 643
Fnu4HI GCNGC 2 cut(s) 120, 603
Fsp4HI GCNGC 2 cut(s) 120, 603
GlaI GCGC 2 cut(s) 72, 506
GluI GCNGC 2 cut(s) 120, 603
HaeII RGCGCY 1 cut(s) 74
HaeIII GGCC 2 cut(s) 23, 359
HgaI GACGC 2 cut(s) 572, 662
HhaI GCGC 2 cut(s) 73, 507
Hin1II CATG 2 cut(s) 28, 518
Hin6I GCGC 2 cut(s) 71, 505
HinP1I GCGC 2 cut(s) 71, 505
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 1 cut(s) 288
HphI GGTGA 1 cut(s) 434
Hpy166II GTNNAC 2 cut(s) 205, 442
Hpy188I TCNGA 4 cut(s) 66, 216, 473, 579
Hpy188III TCNNGA 1 cut(s) 125
Hpy8I GTNNAC 2 cut(s) 205, 442
HpyAV CCTTC 3 cut(s) 4, 137, 416
HpyCH4IV ACGT 1 cut(s) 157
HpyCH4V TGCA 4 cut(s) 155, 247, 382, 412
HpyF10VI GCNNNNNNNGC 7 cut(s) 20, 53, 68, 77, 86, 511, 547
HpyF3I CTNAG 2 cut(s) 38, 63
HpySE526I ACGT 1 cut(s) 157
Hsp92II CATG 2 cut(s) 28, 518
HspAI GCGC 2 cut(s) 71, 505
Ksp22I TGATCA 1 cut(s) 643
Kzo9I GATC 2 cut(s) 574, 643
LguI GCTCTTC 1 cut(s) 531
LmnI GCTCC 3 cut(s) 127, 168, 658
Lsp1109I GCAGC 2 cut(s) 106, 589
MaeII ACGT 1 cut(s) 157
MalI GATC 2 cut(s) 576, 645
MboI GATC 2 cut(s) 574, 643
MboII GAAGA 8 cut(s) 75, 182, 197, 469, 548, 580, 673, 676
MflI RGATCY 1 cut(s) 574
MhlI GDGCHC 2 cut(s) 543, 626
MlsI TGGCCA 1 cut(s) 359
MluCI AATT 6 cut(s) 363, 385, 498, 561, 594, 630
MluNI TGGCCA 1 cut(s) 359
MmeI TCCRAC 1 cut(s) 194
MnlI CCTC 6 cut(s) 121, 189, 337, 438, 504, 592
Mox20I TGGCCA 1 cut(s) 359
Mph1103I ATGCAT 1 cut(s) 384
MroXI GAANNNNTTC 1 cut(s) 405
MscI TGGCCA 1 cut(s) 359
MseI TTAA 3 cut(s) 180, 284, 564
Msp20I TGGCCA 1 cut(s) 359
MspA1I CMGCKG 1 cut(s) 533
MspCI CTTAAG 1 cut(s) 179
MspR9I CCNGG 1 cut(s) 351
Mva1269I GAATGC 1 cut(s) 407
MvaI CCWGG 1 cut(s) 351
MwoI GCNNNNNNNGC 7 cut(s) 20, 53, 68, 77, 86, 511, 547
NdeII GATC 2 cut(s) 574, 643
NlaIII CATG 2 cut(s) 28, 518
NlaIV GGNNCC 1 cut(s) 348
NsiI ATGCAT 1 cut(s) 384
NspV TTCGAA 1 cut(s) 399
PasI CCCWGGG 1 cut(s) 350
PciSI GCTCTTC 1 cut(s) 531
PctI GAATGC 1 cut(s) 407
PdmI GAANNNNTTC 1 cut(s) 405
PfeI GAWTC 1 cut(s) 288
Pfl23II CGTACG 1 cut(s) 292
PkrI GCNGC 2 cut(s) 121, 604
Ppu21I YACGTR 1 cut(s) 158
PpuMI RGGWCCY 1 cut(s) 346
Psp5II RGGWCCY 1 cut(s) 346
Psp6I CCWGG 1 cut(s) 349
PspGI CCWGG 1 cut(s) 349
PspLI CGTACG 1 cut(s) 292
PspN4I GGNNCC 1 cut(s) 348
PspPI GGNCC 2 cut(s) 149, 346
PspPPI RGGWCCY 1 cut(s) 346
PstNI CAGNNNCTG 1 cut(s) 53
PsuI RGATCY 1 cut(s) 574
PvuII CAGCTG 1 cut(s) 533
RsaI GTAC 3 cut(s) 206, 294, 617
RsaNI GTAC 3 cut(s) 205, 293, 616
SapI GCTCTTC 1 cut(s) 531
SaqAI TTAA 3 cut(s) 180, 284, 564
SatI GCNGC 2 cut(s) 120, 603
Sau3AI GATC 2 cut(s) 574, 643
Sau96I GGNCC 2 cut(s) 149, 346
ScrFI CCNGG 1 cut(s) 351
SduI GDGCHC 2 cut(s) 543, 626
SetI ASST 6 cut(s) 160, 165, 180, 373, 535, 552
SfuI TTCGAA 1 cut(s) 399
SinI GGWCC 2 cut(s) 149, 346
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
Sse9I AATT 6 cut(s) 363, 385, 498, 561, 594, 630
SsiI CCGC 1 cut(s) 147
StyD4I CCNGG 1 cut(s) 349
TaiI ACGT 1 cut(s) 160
TaqI TCGA 1 cut(s) 399
TasI AATT 6 cut(s) 363, 385, 498, 561, 594, 630
TatI WGTACW 2 cut(s) 204, 615
TfiI GAWTC 1 cut(s) 288
Tru1I TTAA 3 cut(s) 180, 284, 564
Tru9I TTAA 3 cut(s) 180, 284, 564
TseI GCWGC 2 cut(s) 119, 602
TspDTI ATGAA 3 cut(s) 41, 249, 322
Vha464I CTTAAG 1 cut(s) 179
VpaK11BI GGWCC 2 cut(s) 149, 346
XmnI GAANNNNTTC 1 cut(s) 405
Zsp2I ATGCAT 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.