Rorug04G0269100

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0008685
Physical Location & Seq
Forward (+)
44226390 .. 44227365
976 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0269100.1

Sequence Viewer

Length: 324 bp
ATGCCTCTCCCAGATTCTGTCCCAGCTGAGCCCCCTCAACCATTTGATAAAGAACCTCCAGAAGCAGGAGTAATATACGATGTCACTGACTATGGAGCGCTTGCTGATGGGGTCACCACTAATATATACCTTGGTTCACTCTCACAGGATCAGGAAATTTCGATGGCCCAAGGTTCAGAAACTTGGCCTAAGGCCACCTGCCACAAAAAGGAAAAGTACAGCCAAAACTTCCCTACTTCACTGAAACTCAACAATGTGTCATATGGGACGATAAGCAGCATTGGTCAGTCAAATAGTAAAGCCTTCCATGTTGAGCATCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

107

Amino Acids

11.64

Weight (kDa)

4.79

Isoelectric Point (pI)

54.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 206
Acc36I ACCTGC 1 cut(s) 206
AclWI GGATC 1 cut(s) 156
AcsI RAATTY 1 cut(s) 156
AfaI GTAC 1 cut(s) 218
AfeI AGCGCT 1 cut(s) 99
AfiI CCNNNNNNNGG 2 cut(s) 65, 208
AluBI AGCT 1 cut(s) 26
AluI AGCT 1 cut(s) 26
AlwI GGATC 1 cut(s) 156
AlwNI CAGNNNCTG 1 cut(s) 17
Aor51HI AGCGCT 1 cut(s) 99
AoxI GGCC 3 cut(s) 165, 185, 192
ApeKI GCWGC 1 cut(s) 276
ApoI RAATTY 1 cut(s) 156
AspLEI GCGC 1 cut(s) 100
AspS9I GGNCC 1 cut(s) 166
AsuHPI GGTGA 1 cut(s) 106
AxyI CCTNAGG 1 cut(s) 189
BanII GRGCYC 1 cut(s) 33
BbvI GCAGC 1 cut(s) 288
BccI CCATC 2 cut(s) 101, 157
BfoI RGCGCY 1 cut(s) 101
BfuAI ACCTGC 1 cut(s) 206
BisI GCNGC 1 cut(s) 277
BlpI GCTNAGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 278
BmgT120I GGNCC 1 cut(s) 166
BpmI CTGGAG 1 cut(s) 42
Bpu1102I GCTNAGC 1 cut(s) 27
BsaJI CCNNGG 2 cut(s) 130, 169
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 208
Bse21I CCTNAGG 1 cut(s) 189
BseDI CCNNGG 2 cut(s) 130, 169
BseLI CCNNNNNNNGG 2 cut(s) 65, 208
BseMII CTCAG 1 cut(s) 18
BseXI GCAGC 1 cut(s) 288
BseYI CCCAGC 1 cut(s) 22
BshFI GGCC 3 cut(s) 167, 187, 194
BslFI GGGAC 2 cut(s) 5, 280
BslI CCNNNNNNNGG 2 cut(s) 65, 208
BsmFI GGGAC 2 cut(s) 5, 280
BsnI GGCC 3 cut(s) 167, 187, 194
Bsp1286I GDGCHC 1 cut(s) 33
Bsp143I GATC 1 cut(s) 148
Bsp1720I GCTNAGC 1 cut(s) 27
BspANI GGCC 3 cut(s) 167, 187, 194
BspCNI CTCAG 1 cut(s) 19
BspMI ACCTGC 1 cut(s) 206
BspPI GGATC 1 cut(s) 156
BssECI CCNNGG 2 cut(s) 130, 169
BssMI GATC 1 cut(s) 148
BssT1I CCWWGG 2 cut(s) 130, 169
BstC8I GCNNGC 1 cut(s) 102
BstDEI CTNAG 2 cut(s) 27, 189
BstEII GGTNACC 1 cut(s) 112
BstH2I RGCGCY 1 cut(s) 101
BstHHI GCGC 1 cut(s) 100
BstKTI GATC 1 cut(s) 151
BstMBI GATC 1 cut(s) 148
BstPI GGTNACC 1 cut(s) 112
BstV1I GCAGC 1 cut(s) 288
Bsu36I CCTNAGG 1 cut(s) 189
BsuRI GGCC 3 cut(s) 167, 187, 194
BtsIMutI CAGTG 2 cut(s) 84, 239
BveI ACCTGC 1 cut(s) 206
Cac8I GCNNGC 1 cut(s) 102
CaiI CAGNNNCTG 1 cut(s) 17
CfoI GCGC 1 cut(s) 100
Cfr13I GGNCC 1 cut(s) 166
Csp6I GTAC 1 cut(s) 217
CviAII CATG 1 cut(s) 308
CviJI RGCY 7 cut(s) 26, 31, 167, 187, 194, 222, 302
CviKI_1 RGCY 7 cut(s) 26, 31, 167, 187, 194, 222, 302
CviQI GTAC 1 cut(s) 217
DdeI CTNAG 2 cut(s) 27, 189
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
Eco130I CCWWGG 2 cut(s) 130, 169
Eco24I GRGCYC 1 cut(s) 33
Eco47III AGCGCT 1 cut(s) 99
Eco81I CCTNAGG 1 cut(s) 189
Eco91I GGTNACC 1 cut(s) 112
EcoO65I GGTNACC 1 cut(s) 112
EcoT14I CCWWGG 2 cut(s) 130, 169
EcoT38I GRGCYC 1 cut(s) 33
ErhI CCWWGG 2 cut(s) 130, 169
FaeI CATG 1 cut(s) 311
FaiI YATR 8 cut(s) 76, 93, 125, 127, 262, 264, 309, 322
FaqI GGGAC 2 cut(s) 5, 280
FatI CATG 1 cut(s) 307
FauNDI CATATG 1 cut(s) 262
Fnu4HI GCNGC 1 cut(s) 277
FriOI GRGCYC 1 cut(s) 33
Fsp4HI GCNGC 1 cut(s) 277
GlaI GCGC 1 cut(s) 99
GluI GCNGC 1 cut(s) 277
GsaI CCCAGC 1 cut(s) 26
GsuI CTGGAG 1 cut(s) 42
HaeII RGCGCY 1 cut(s) 101
HaeIII GGCC 3 cut(s) 167, 187, 194
HhaI GCGC 1 cut(s) 100
Hin1II CATG 1 cut(s) 311
Hin6I GCGC 1 cut(s) 98
HinP1I GCGC 1 cut(s) 98
HinfI GANTC 1 cut(s) 14
HphI GGTGA 1 cut(s) 106
Hpy166II GTNNAC 1 cut(s) 137
Hpy188I TCNGA 1 cut(s) 178
Hpy188III TCNNGA 2 cut(s) 59, 152
Hpy8I GTNNAC 1 cut(s) 137
HpyAV CCTTC 1 cut(s) 313
HpyF3I CTNAG 2 cut(s) 27, 189
Hsp92II CATG 1 cut(s) 311
HspAI GCGC 1 cut(s) 98
Kzo9I GATC 1 cut(s) 148
LmnI GCTCC 1 cut(s) 95
LpnPI CCDG 7 cut(s) 24, 36, 51, 72, 131, 137, 211
Lsp1109I GCAGC 1 cut(s) 288
MaeIII GTNAC 2 cut(s) 82, 112
MalI GATC 1 cut(s) 150
MboI GATC 1 cut(s) 148
MhlI GDGCHC 1 cut(s) 33
MluCI AATT 1 cut(s) 156
MnlI CCTC 3 cut(s) 15, 45, 66
MspA1I CMGCKG 1 cut(s) 26
NdeI CATATG 1 cut(s) 262
NdeII GATC 1 cut(s) 148
NlaIII CATG 1 cut(s) 311
NmuCI GTSAC 2 cut(s) 82, 112
PaqCI CACCTGC 1 cut(s) 206
PfeI GAWTC 1 cut(s) 14
PkrI GCNGC 1 cut(s) 278
PspEI GGTNACC 1 cut(s) 112
PspFI CCCAGC 1 cut(s) 22
PspPI GGNCC 1 cut(s) 166
PstNI CAGNNNCTG 1 cut(s) 17
PvuII CAGCTG 1 cut(s) 26
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
SatI GCNGC 1 cut(s) 277
Sau3AI GATC 1 cut(s) 148
Sau96I GGNCC 1 cut(s) 166
SduI GDGCHC 1 cut(s) 33
SetI ASST 5 cut(s) 28, 58, 132, 175, 200
Sse9I AATT 1 cut(s) 156
StyI CCWWGG 2 cut(s) 130, 169
TaqI TCGA 1 cut(s) 161
TasI AATT 1 cut(s) 156
TatI WGTACW 1 cut(s) 216
TfiI GAWTC 1 cut(s) 14
TscAI CASTG 2 cut(s) 91, 246
TseFI GTSAC 2 cut(s) 82, 112
TseI GCWGC 1 cut(s) 276
Tsp45I GTSAC 2 cut(s) 82, 112
TspRI CASTG 2 cut(s) 91, 246
XapI RAATTY 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.