Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008685

Physical Location & Seq

Genomic Coordinates Reverse (-)

38319456 .. 38322727

Gene Structure 3272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g38550.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGGGGCGAAGGCGAAAAAGGCGATGAAAAAGCAATTGAGCAAAGCCTCTGCTCAATTATCAGCTTCTTCTCACAAAAATAAAGAAGCTGCTGCTACTGCTACTGTAACTGTTACTGCTTCTACCGCTGCTGATTTCTTGCCATTAGAAGGTGGTCCAGCTCGTAAGCTCCCCGAGGAAAAGCCCAAGGAGGATATTTGTACAGTTTTATACATTGGTCGGATACCTCACGGCTTCTATGAGAAGGAAATGGAAGGATTTTTTGGGCAATTTGGTTCGATTAAGAGATTAAGAATTGCGCGTAACAAAAAGACAGGAAAATCGAAGCATTTTGGCTTCATTGAGTTTGAAGACCCTGAGGTGGCAAAAGTTGTAGCTGACACTATGCATAACTATTTGTTGTTCGAACACGTGTTGCAAGTCCATCTTATTCCTCCACAGAAAGTTCACCCGAAATTATGGAAGGGTTTCAACTACCGAGTCAGACCCGAGAACTGGGTTCAAATTGAGCGGAAGAGGCATGACAAGGAAAGAACGGTGGAAGAGCTCAAGAAGTTAATGGAGAAGATTATGAAGAGAGATCTGAAGCGTCAAAAGAAAATTGAGGCCGCTGGTATTGATTATAAATGCCCAGAAATTGTGGGTGGTAGTGAAGAACCTGCTCCAAAGAAAAGGAAGACCGACCGGAAGAAGGTTGTTTCGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

236

Amino Acids

26.83

Weight (kDa)

9.88

Isoelectric Point (pI)

44.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04600
fragaria_vesca	FvH4_5g27351
malus_domestica	MD08G1243300.v1.1 MD15G1437100.v1.1
prunus_persica	Prupe.1G580700_v2.0.a1 Prupe.1G580700_v2.0.a1 Prupe.1G580700_v2.0.a1 Prupe.1G580700_v2.0.a1
pyrus_communis	pycom08g21100 pycom15g38550
rosa_chinensis	RchiOBHm_Chr4g0433501
rosa_laevigata	RLG00000006750
rosa_multiflora	Rmu_sc0000312.1_g000003 Rmu_sc0000759.1_g000001 Rmu_sc0018241.1_g000001
rosa_roxburghii	Rroxscaffold_5G00375020
rosa_rugosa	Rorug04G0269100
rosa_samantha	Rh4AG323700 Rh4BG331700 Rh4CG347000 Rh4DG328200
rosa_wichuraiana	Rw0G020110 Rw4G028050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	624
Acc36I	ACCTGC	1 cut(s)	667
AccBSI	CCGCTC	1 cut(s)	511
AccII	CGCG	1 cut(s)	301
AciI	CCGC	3 cut(s)	126, 511, 609
AcuI	CTGAAG	1 cut(s)	605
AcvI	CACGTG	1 cut(s)	412
AfaI	GTAC	1 cut(s)	202
AfiI	CCNNNNNNNGG	4 cut(s)	149, 361, 495, 691
AflIII	ACRYGT	2 cut(s)	409, 411
AgsI	TTSAA	3 cut(s)	350, 472, 503
AjuI	GAANNNNNNNTTGG	2 cut(s)	246, 278
AluBI	AGCT	6 cut(s)	65, 89, 161, 169, 377, 547
AluI	AGCT	6 cut(s)	65, 89, 161, 169, 377, 547
Alw21I	GWGCWC	1 cut(s)	549
Ama87I	CYCGRG	2 cut(s)	173, 488
AoxI	GGCC	1 cut(s)	606
ApeKI	GCWGC	3 cut(s)	89, 92, 128
Asp700I	GAANNNNTTC	1 cut(s)	467
AspLEI	GCGC	1 cut(s)	301
AspS9I	GGNCC	1 cut(s)	155
AsuHPI	GGTGA	1 cut(s)	440
AsuII	TTCGAA	2 cut(s)	405, 701
AvaI	CYCGRG	2 cut(s)	173, 488
AvaII	GGWCC	1 cut(s)	155
AxyI	CCTNAGG	1 cut(s)	357
BanII	GRGCYC	1 cut(s)	549
BbrPI	CACGTG	1 cut(s)	412
BbsI	GAAGAC	2 cut(s)	357, 683
Bbv12I	GWGCWC	1 cut(s)	549
BbvI	GCAGC	3 cut(s)	76, 79, 115
BccI	CCATC	1 cut(s)	432
BceAI	ACGGC	1 cut(s)	247
BciVI	GTATCC	1 cut(s)	216
BfuAI	ACCTGC	1 cut(s)	667
BfuI	GTATCC	1 cut(s)	216
BglII	AGATCT	1 cut(s)	580
BisI	GCNGC	4 cut(s)	90, 93, 129, 609
BlsI	GCNGC	4 cut(s)	91, 94, 130, 610
Bme18I	GGWCC	1 cut(s)	155
BmeT110I	CYCGRG	2 cut(s)	173, 488
BmgT120I	GGNCC	1 cut(s)	155
BmrI	ACTGGG	1 cut(s)	505
BmuI	ACTGGG	1 cut(s)	505
BpiI	GAAGAC	2 cut(s)	357, 683
Bpu14I	TTCGAA	2 cut(s)	405, 701
BpuEI	CTTGAG	1 cut(s)	533
BsaAI	YACGTR	1 cut(s)	412
BsaJI	CCNNGG	2 cut(s)	174, 186
BsaWI	WCCGGW	1 cut(s)	684
Bsc4I	CCNNNNNNNGG	4 cut(s)	149, 361, 495, 691
Bse1I	ACTGG	1 cut(s)	500
Bse21I	CCTNAGG	1 cut(s)	357
BseDI	CCNNGG	2 cut(s)	174, 186
BseLI	CCNNNNNNNGG	4 cut(s)	149, 361, 495, 691
BseMII	CTCAG	1 cut(s)	348
BseNI	ACTGG	1 cut(s)	500
BseXI	GCAGC	3 cut(s)	76, 79, 115
Bsh1236I	CGCG	1 cut(s)	301
Bsh1285I	CGRYCG	1 cut(s)	685
BshFI	GGCC	1 cut(s)	608
BsiEI	CGRYCG	1 cut(s)	685
BsiHKAI	GWGCWC	1 cut(s)	549
BsiHKCI	CYCGRG	2 cut(s)	173, 488
BsiSI	CCGG	1 cut(s)	685
BslI	CCNNNNNNNGG	4 cut(s)	149, 361, 495, 691
BsnI	GGCC	1 cut(s)	608
BsoBI	CYCGRG	2 cut(s)	173, 488
Bsp119I	TTCGAA	2 cut(s)	405, 701
Bsp1286I	GDGCHC	1 cut(s)	549
Bsp1407I	TGTACA	1 cut(s)	200
Bsp143I	GATC	1 cut(s)	580
BspACI	CCGC	3 cut(s)	126, 511, 609
BspANI	GGCC	1 cut(s)	608
BspCNI	CTCAG	1 cut(s)	349
BspFNI	CGCG	1 cut(s)	301
BspMI	ACCTGC	1 cut(s)	667
BspQI	GCTCTTC	1 cut(s)	537
BspT104I	TTCGAA	2 cut(s)	405, 701
BsrBI	CCGCTC	1 cut(s)	511
BsrGI	TGTACA	1 cut(s)	200
BsrI	ACTGG	1 cut(s)	500
BssECI	CCNNGG	2 cut(s)	174, 186
BssMI	GATC	1 cut(s)	580
BssT1I	CCWWGG	1 cut(s)	186
Bst4CI	ACNGT	4 cut(s)	106, 112, 205, 538
Bst6I	CTCTTC	3 cut(s)	509, 537, 569
BstAUI	TGTACA	1 cut(s)	200
BstBAI	YACGTR	1 cut(s)	412
BstBI	TTCGAA	2 cut(s)	405, 701
BstDEI	CTNAG	1 cut(s)	357
BstFNI	CGCG	1 cut(s)	301
BstHHI	GCGC	1 cut(s)	301
BstKTI	GATC	1 cut(s)	583
BstMBI	GATC	1 cut(s)	580
BstMCI	CGRYCG	1 cut(s)	685
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 98, 125, 517
BstUI	CGCG	1 cut(s)	301
BstV1I	GCAGC	3 cut(s)	76, 79, 115
BstV2I	GAAGAC	2 cut(s)	357, 683
BstX2I	RGATCY	1 cut(s)	580
BstYI	RGATCY	1 cut(s)	580
Bsu36I	CCTNAGG	1 cut(s)	357
BsuI	GTATCC	1 cut(s)	216
BsuRI	GGCC	1 cut(s)	608
BtgZI	GCGATG	1 cut(s)	38
BveI	ACCTGC	1 cut(s)	667
CfoI	GCGC	1 cut(s)	301
Cfr13I	GGNCC	1 cut(s)	155
CseI	GACGC	1 cut(s)	578
Csp6I	GTAC	1 cut(s)	201
CviAII	CATG	1 cut(s)	521
CviQI	GTAC	1 cut(s)	201
DdeI	CTNAG	1 cut(s)	357
DpnI	GATC	1 cut(s)	582
DpnII	GATC	1 cut(s)	580
Eam1104I	CTCTTC	3 cut(s)	509, 537, 569
EarI	CTCTTC	3 cut(s)	509, 537, 569
Ecl136II	GAGCTC	1 cut(s)	547
Eco130I	CCWWGG	1 cut(s)	186
Eco24I	GRGCYC	1 cut(s)	549
Eco47I	GGWCC	1 cut(s)	155
Eco53kI	GAGCTC	1 cut(s)	547
Eco57I	CTGAAG	1 cut(s)	605
Eco72I	CACGTG	1 cut(s)	412
Eco81I	CCTNAGG	1 cut(s)	357
Eco88I	CYCGRG	2 cut(s)	173, 488
EcoICRI	GAGCTC	1 cut(s)	547
EcoT14I	CCWWGG	1 cut(s)	186
EcoT22I	ATGCAT	1 cut(s)	390
EcoT38I	GRGCYC	1 cut(s)	549
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	1 cut(s)	524
FaiI	YATR	8 cut(s)	211, 240, 386, 390, 460, 522, 572, 624
FalI	AAGNNNNNCTT	2 cut(s)	411, 443
FatI	CATG	1 cut(s)	520
Fnu4HI	GCNGC	4 cut(s)	90, 93, 129, 609
FriOI	GRGCYC	1 cut(s)	549
Fsp4HI	GCNGC	4 cut(s)	90, 93, 129, 609
GlaI	GCGC	1 cut(s)	300
GluI	GCNGC	4 cut(s)	90, 93, 129, 609
HaeIII	GGCC	1 cut(s)	608
HapII	CCGG	1 cut(s)	685
HgaI	GACGC	1 cut(s)	578
HhaI	GCGC	1 cut(s)	301
Hin1II	CATG	1 cut(s)	524
Hin6I	GCGC	1 cut(s)	299
HinP1I	GCGC	1 cut(s)	299
HinfI	GANTC	1 cut(s)	480
HpaII	CCGG	1 cut(s)	685
HphI	GGTGA	1 cut(s)	440
Hpy166II	GTNNAC	1 cut(s)	448
Hpy188I	TCNGA	3 cut(s)	222, 485, 585
Hpy188III	TCNNGA	1 cut(s)	550
Hpy8I	GTNNAC	1 cut(s)	448
HpyAV	CCTTC	6 cut(s)	4, 143, 238, 248, 457, 685
HpyCH4III	ACNGT	4 cut(s)	106, 112, 205, 538
HpyCH4IV	ACGT	1 cut(s)	411
HpyCH4V	TGCA	2 cut(s)	388, 418
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 98, 125, 517
HpyF3I	CTNAG	1 cut(s)	357
HpySE526I	ACGT	1 cut(s)	411
Hsp92II	CATG	1 cut(s)	524
HspAI	GCGC	1 cut(s)	299
Kzo9I	GATC	1 cut(s)	580
LguI	GCTCTTC	1 cut(s)	537
LmnI	GCTCC	2 cut(s)	174, 667
LpnPI	CCDG	8 cut(s)	171, 300, 369, 481, 597, 645, 672, 698
Lsp1109I	GCAGC	3 cut(s)	76, 79, 115
MaeII	ACGT	1 cut(s)	411
MaeIII	GTNAC	3 cut(s)	106, 112, 302
MalI	GATC	1 cut(s)	582
MbiI	CCGCTC	1 cut(s)	511
MboI	GATC	1 cut(s)	580
MboII	GAAGA	9 cut(s)	60, 362, 526, 554, 577, 586, 665, 688, 700
MfeI	CAATTG	1 cut(s)	35
MflI	RGATCY	1 cut(s)	580
MhlI	GDGCHC	1 cut(s)	549
MluCI	AATT	8 cut(s)	35, 56, 269, 294, 455, 504, 600, 636
MlyI	GAGTC	1 cut(s)	489
MmeI	TCCRAC	1 cut(s)	200
MnlI	CCTC	8 cut(s)	58, 169, 184, 237, 352, 444, 510, 598
Mph1103I	ATGCAT	1 cut(s)	390
MroXI	GAANNNNTTC	1 cut(s)	467
MseI	TTAA	3 cut(s)	282, 290, 557
MspA1I	CMGCKG	2 cut(s)	128, 611
MspI	CCGG	1 cut(s)	685
MunI	CAATTG	1 cut(s)	35
MvnI	CGCG	1 cut(s)	301
MwoI	GCNNNNNNNGC	4 cut(s)	20, 98, 125, 517
NdeII	GATC	1 cut(s)	580
NlaIII	CATG	1 cut(s)	524
NsiI	ATGCAT	1 cut(s)	390
NspV	TTCGAA	2 cut(s)	405, 701
PciSI	GCTCTTC	1 cut(s)	537
PdmI	GAANNNNTTC	1 cut(s)	467
PkrI	GCNGC	4 cut(s)	91, 94, 130, 610
PleI	GAGTC	1 cut(s)	488
PmaCI	CACGTG	1 cut(s)	412
PmlI	CACGTG	1 cut(s)	412
PpsI	GAGTC	1 cut(s)	488
Ppu21I	YACGTR	1 cut(s)	412
PsiI	TTATAA	1 cut(s)	624
Psp124BI	GAGCTC	1 cut(s)	549
PspCI	CACGTG	1 cut(s)	412
PspPI	GGNCC	1 cut(s)	155
PsuI	RGATCY	1 cut(s)	580
RsaI	GTAC	1 cut(s)	202
RsaNI	GTAC	1 cut(s)	201
SacI	GAGCTC	1 cut(s)	549
SapI	GCTCTTC	1 cut(s)	537
SaqAI	TTAA	3 cut(s)	282, 290, 557
SatI	GCNGC	4 cut(s)	90, 93, 129, 609
Sau3AI	GATC	1 cut(s)	580
Sau96I	GGNCC	1 cut(s)	155
SchI	GAGTC	1 cut(s)	489
SduI	GDGCHC	1 cut(s)	549
SfuI	TTCGAA	2 cut(s)	405, 701
SinI	GGWCC	1 cut(s)	155
SmlI	CTYRAG	1 cut(s)	548
SmoI	CTYRAG	1 cut(s)	548
Sse9I	AATT	8 cut(s)	35, 56, 269, 294, 455, 504, 600, 636
SsiI	CCGC	3 cut(s)	126, 511, 609
SstI	GAGCTC	1 cut(s)	549
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	4 cut(s)	106, 112, 205, 538
TaiI	ACGT	1 cut(s)	414
TaqI	TCGA	4 cut(s)	278, 323, 405, 701
TaqII	GACCGA	1 cut(s)	695
TasI	AATT	8 cut(s)	35, 56, 269, 294, 455, 504, 600, 636
TatI	WGTACW	1 cut(s)	200
TauI	GCSGC	1 cut(s)	611
Tru1I	TTAA	3 cut(s)	282, 290, 557
Tru9I	TTAA	3 cut(s)	282, 290, 557
TseI	GCWGC	3 cut(s)	89, 92, 128
TspDTI	ATGAA	3 cut(s)	41, 328, 587
VpaK11BI	GGWCC	1 cut(s)	155
XmnI	GAANNNNTTC	1 cut(s)	467
Zsp2I	ATGCAT	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.