Rh4AG323700

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0008685
Physical Location & Seq
Forward (+)
63581575 .. 63583943
2369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG323700.1

Sequence Viewer

Length: 771 bp
ATGCCCAACACATCAGAAGGTATAACTGAAAACCTAAAACACAAAACGCGCCTCTTCCTCCTCTTCCTCTTCCAAAAATCCCAGCTCTCTGTACTCTCTTTTCTTCAGCGCAAGATGGGGGCGAAGGCGAAAAAGGCCATGAAAAAGCAGCTGAGCAAAGCTGTTTCTGCTTCTGCTCAAAAACCAGTTGCTAGTTCCGCTACTGCTGCTCCTGATTTTTTGCCATTAGAAGGCGGTCCTGCGCGTAAGCTCCCGGAAGAGAAGCCTAAGGAAGATGTTGCCAGGGTTGTATACATCAGTCGGATACCGCACGGCTTCTATGAAAAAGAAATGCAAGGTTTCTTTGGGCAGTTTGGTGTAATTAAGAGATTAAGAATTGTACGCAACAGAAAGACAGGAAAGTCCAAGCATTTTGGCTTCATCGAGTTTGAGGACCCTGGGGTTGCGAAAATTGTAGCTGAAACTATGGATAATTATTTGTTGTTCGAACACCTTTTGCAAACCCGTCTTATTCCTCCAGAGAAAGTTCACCCGAAGTTGTGGAAAGGTTGCAACGTTCGAGCCAAACCCTTGAACTGGGTTCAAATTGAGCGCAAGAGGCATGATAAGGAAAGAACATTGGAAGAGCACAAAAAACTGGTGGAGAAAATTAAGAAGAGAGATCTGAAGCGTCAAAAGAGAATAGAGGCTGCTGGCATTGAGTATGAGTGCCCAGACATTGTCACTAATGATCAGCCTGCTCCAAAGAAGAAGAAGTTGCGTCTAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

256

Amino Acids

29.53

Weight (kDa)

10.12

Isoelectric Point (pI)

41.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 97 - 164 8.4e-13 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 400
AccI GTMKAC 1 cut(s) 291
AccII CGCG 2 cut(s) 49, 244
AciI CCGC 3 cut(s) 198, 234, 308
AclI AACGTT 1 cut(s) 555
AcuI CTGAAG 2 cut(s) 89, 686
AfaI GTAC 2 cut(s) 93, 381
AfiI CCNNNNNNNGG 2 cut(s) 230, 576
AgsI TTSAA 2 cut(s) 574, 584
AjnI CCWGG 2 cut(s) 281, 436
AluBI AGCT 5 cut(s) 85, 151, 161, 250, 458
AluI AGCT 5 cut(s) 85, 151, 161, 250, 458
Alw21I GWGCWC 1 cut(s) 630
AoxI GGCC 1 cut(s) 135
ApeKI GCWGC 3 cut(s) 148, 206, 689
AspLEI GCGC 4 cut(s) 51, 111, 244, 594
AspS9I GGNCC 2 cut(s) 236, 433
AsuC2I CCSGG 1 cut(s) 254
AsuHPI GGTGA 1 cut(s) 521
AsuII TTCGAA 1 cut(s) 486
AvaII GGWCC 2 cut(s) 236, 433
AxyI CCTNAGG 1 cut(s) 267
BaeGI GKGCMC 1 cut(s) 713
Bbv12I GWGCWC 1 cut(s) 630
BbvI GCAGC 3 cut(s) 160, 193, 676
BccI CCATC 1 cut(s) 109
BceAI ACGGC 1 cut(s) 328
BciT130I CCWGG 2 cut(s) 283, 438
BciVI GTATCC 1 cut(s) 297
BclI TGATCA 1 cut(s) 730
BcnI CCSGG 1 cut(s) 254
BfaI CTAG 1 cut(s) 192
BfuI GTATCC 1 cut(s) 297
BglII AGATCT 1 cut(s) 661
BisI GCNGC 3 cut(s) 149, 207, 690
BlpI GCTNAGC 1 cut(s) 152
BlsI GCNGC 3 cut(s) 150, 208, 691
Bme1390I CCNGG 3 cut(s) 254, 283, 438
Bme18I GGWCC 2 cut(s) 236, 433
BmgT120I GGNCC 2 cut(s) 236, 433
BmiI GGNNCC 1 cut(s) 435
BmrFI CCNGG 3 cut(s) 254, 283, 438
BmrI ACTGGG 1 cut(s) 586
BmuI ACTGGG 1 cut(s) 586
BpmI CTGGAG 1 cut(s) 501
Bpu1102I GCTNAGC 1 cut(s) 152
Bpu14I TTCGAA 1 cut(s) 486
BpuMI CCSGG 1 cut(s) 254
BsaJI CCNNGG 3 cut(s) 282, 436, 437
BsaXI ACNNNNNCTCC 2 cut(s) 193, 223
Bsc4I CCNNNNNNNGG 2 cut(s) 230, 576
Bse1I ACTGG 3 cut(s) 185, 581, 642
Bse21I CCTNAGG 1 cut(s) 267
BseBI CCWGG 2 cut(s) 283, 438
BseDI CCNNGG 3 cut(s) 282, 436, 437
BseLI CCNNNNNNNGG 2 cut(s) 230, 576
BseMII CTCAG 1 cut(s) 143
BseNI ACTGG 3 cut(s) 185, 581, 642
BseRI GAGGAG 1 cut(s) 50
BseSI GKGCMC 1 cut(s) 713
BseXI GCAGC 3 cut(s) 160, 193, 676
BseYI CCCAGC 1 cut(s) 81
Bsh1236I CGCG 2 cut(s) 49, 244
BshFI GGCC 1 cut(s) 137
BsiHKAI GWGCWC 1 cut(s) 630
BsiSI CCGG 1 cut(s) 254
BslI CCNNNNNNNGG 2 cut(s) 230, 576
BsnI GGCC 1 cut(s) 137
Bsp119I TTCGAA 1 cut(s) 486
Bsp1286I GDGCHC 2 cut(s) 630, 713
Bsp143I GATC 2 cut(s) 661, 730
Bsp1720I GCTNAGC 1 cut(s) 152
BspACI CCGC 3 cut(s) 198, 234, 308
BspANI GGCC 1 cut(s) 137
BspCNI CTCAG 1 cut(s) 144
BspFNI CGCG 2 cut(s) 49, 244
BspLI GGNNCC 1 cut(s) 435
BspQI GCTCTTC 1 cut(s) 618
BspT104I TTCGAA 1 cut(s) 486
BsrI ACTGG 3 cut(s) 185, 581, 642
BssECI CCNNGG 3 cut(s) 282, 436, 437
BssMI GATC 2 cut(s) 661, 730
BssNAI GTATAC 1 cut(s) 292
Bst1107I GTATAC 1 cut(s) 292
Bst2UI CCWGG 2 cut(s) 283, 438
Bst6I CTCTTC 6 cut(s) 59, 68, 74, 252, 618, 650
BstBI TTCGAA 1 cut(s) 486
BstC8I GCNNGC 2 cut(s) 694, 738
BstDEI CTNAG 2 cut(s) 152, 267
BstFNI CGCG 2 cut(s) 49, 244
BstHHI GCGC 4 cut(s) 51, 111, 244, 594
BstKTI GATC 2 cut(s) 664, 733
BstMBI GATC 2 cut(s) 661, 730
BstMWI GCNNNNNNNGC 5 cut(s) 134, 167, 197, 206, 598
BstNI CCWGG 2 cut(s) 283, 438
BstSCI CCNGG 3 cut(s) 252, 281, 436
BstSLI GKGCMC 1 cut(s) 713
BstUI CGCG 2 cut(s) 49, 244
BstV1I GCAGC 3 cut(s) 160, 193, 676
BstX2I RGATCY 1 cut(s) 661
BstYI RGATCY 1 cut(s) 661
BstZ17I GTATAC 1 cut(s) 292
Bsu36I CCTNAGG 1 cut(s) 267
BsuI GTATCC 1 cut(s) 297
BsuRI GGCC 1 cut(s) 137
Cac8I GCNNGC 2 cut(s) 694, 738
CfoI GCGC 4 cut(s) 51, 111, 244, 594
Cfr13I GGNCC 2 cut(s) 236, 433
CseI GACGC 2 cut(s) 659, 749
Csp6I GTAC 2 cut(s) 92, 380
CviAII CATG 2 cut(s) 139, 602
CviQI GTAC 2 cut(s) 92, 380
DdeI CTNAG 2 cut(s) 152, 267
DpnI GATC 2 cut(s) 663, 732
DpnII GATC 2 cut(s) 661, 730
DrdI GACNNNNNNGTC 1 cut(s) 400
DseDI GACNNNNNNGTC 1 cut(s) 400
Eam1104I CTCTTC 6 cut(s) 59, 68, 74, 252, 618, 650
EarI CTCTTC 6 cut(s) 59, 68, 74, 252, 618, 650
Eco47I GGWCC 2 cut(s) 236, 433
Eco57I CTGAAG 2 cut(s) 89, 686
Eco81I CCTNAGG 1 cut(s) 267
EcoO109I RGGNCCY 1 cut(s) 433
EcoRII CCWGG 2 cut(s) 281, 436
FaeI CATG 2 cut(s) 142, 605
FaiI YATR 7 cut(s) 23, 140, 292, 321, 467, 603, 705
FatI CATG 2 cut(s) 138, 601
FbaI TGATCA 1 cut(s) 730
FblI GTMKAC 1 cut(s) 291
Fnu4HI GCNGC 3 cut(s) 149, 207, 690
Fsp4HI GCNGC 3 cut(s) 149, 207, 690
FspBI CTAG 1 cut(s) 192
GlaI GCGC 4 cut(s) 50, 110, 243, 593
GluI GCNGC 3 cut(s) 149, 207, 690
GsaI CCCAGC 1 cut(s) 85
GsuI CTGGAG 1 cut(s) 501
HaeIII GGCC 1 cut(s) 137
HapII CCGG 1 cut(s) 254
HgaI GACGC 2 cut(s) 659, 749
HhaI GCGC 4 cut(s) 51, 111, 244, 594
Hin1II CATG 2 cut(s) 142, 605
Hin6I GCGC 4 cut(s) 49, 109, 242, 592
HinP1I GCGC 4 cut(s) 49, 109, 242, 592
HpaII CCGG 1 cut(s) 254
HphI GGTGA 1 cut(s) 521
Hpy166II GTNNAC 2 cut(s) 292, 529
Hpy188I TCNGA 3 cut(s) 16, 303, 666
Hpy188III TCNNGA 2 cut(s) 212, 518
Hpy8I GTNNAC 2 cut(s) 292, 529
HpyAV CCTTC 3 cut(s) 11, 118, 224
HpyCH4IV ACGT 1 cut(s) 555
HpyCH4V TGCA 3 cut(s) 334, 499, 552
HpyF10VI GCNNNNNNNGC 5 cut(s) 134, 167, 197, 206, 598
HpyF3I CTNAG 2 cut(s) 152, 267
HpySE526I ACGT 1 cut(s) 555
Hsp92II CATG 2 cut(s) 142, 605
HspAI GCGC 4 cut(s) 49, 109, 242, 592
Ksp22I TGATCA 1 cut(s) 730
Kzo9I GATC 2 cut(s) 661, 730
LguI GCTCTTC 1 cut(s) 618
LmnI GCTCC 3 cut(s) 214, 255, 745
Lsp1109I GCAGC 3 cut(s) 160, 193, 676
MaeI CTAG 1 cut(s) 192
MaeII ACGT 1 cut(s) 555
MaeIII GTNAC 1 cut(s) 721
MalI GATC 2 cut(s) 663, 732
MboI GATC 2 cut(s) 661, 730
MflI RGATCY 1 cut(s) 661
MhlI GDGCHC 2 cut(s) 630, 713
MluCI AATT 6 cut(s) 360, 375, 450, 472, 585, 648
MmeI TCCRAC 1 cut(s) 281
MnlI CCTC 8 cut(s) 62, 68, 71, 77, 424, 525, 591, 679
MseI TTAA 3 cut(s) 363, 371, 651
MspA1I CMGCKG 1 cut(s) 151
MspI CCGG 1 cut(s) 254
MspR9I CCNGG 3 cut(s) 254, 283, 438
MvaI CCWGG 2 cut(s) 283, 438
MvnI CGCG 2 cut(s) 49, 244
MwoI GCNNNNNNNGC 5 cut(s) 134, 167, 197, 206, 598
NciI CCSGG 1 cut(s) 254
NdeII GATC 2 cut(s) 661, 730
NlaIII CATG 2 cut(s) 142, 605
NlaIV GGNNCC 1 cut(s) 435
NmuCI GTSAC 1 cut(s) 721
NspV TTCGAA 1 cut(s) 486
PasI CCCWGGG 1 cut(s) 437
PciSI GCTCTTC 1 cut(s) 618
PflFI GACNNNGTC 1 cut(s) 719
PfoI TCCNGGA 1 cut(s) 252
PkrI GCNGC 3 cut(s) 150, 208, 691
PpuMI RGGWCCY 1 cut(s) 433
Psp1406I AACGTT 1 cut(s) 555
Psp5II RGGWCCY 1 cut(s) 433
Psp6I CCWGG 2 cut(s) 281, 436
PspFI CCCAGC 1 cut(s) 81
PspGI CCWGG 2 cut(s) 281, 436
PspN4I GGNNCC 1 cut(s) 435
PspPI GGNCC 2 cut(s) 236, 433
PspPPI RGGWCCY 1 cut(s) 433
PsuI RGATCY 1 cut(s) 661
PsyI GACNNNGTC 1 cut(s) 719
PvuII CAGCTG 1 cut(s) 151
RsaI GTAC 2 cut(s) 93, 381
RsaNI GTAC 2 cut(s) 92, 380
SapI GCTCTTC 1 cut(s) 618
SaqAI TTAA 3 cut(s) 363, 371, 651
SatI GCNGC 3 cut(s) 149, 207, 690
Sau3AI GATC 2 cut(s) 661, 730
Sau96I GGNCC 2 cut(s) 236, 433
ScrFI CCNGG 3 cut(s) 254, 283, 438
SduI GDGCHC 2 cut(s) 630, 713
SfuI TTCGAA 1 cut(s) 486
SinI GGWCC 2 cut(s) 236, 433
Sse9I AATT 6 cut(s) 360, 375, 450, 472, 585, 648
SsiI CCGC 3 cut(s) 198, 234, 308
SspMI CTAG 1 cut(s) 192
StyD4I CCNGG 3 cut(s) 252, 281, 436
TaiI ACGT 1 cut(s) 558
TaqI TCGA 3 cut(s) 423, 486, 559
TasI AATT 6 cut(s) 360, 375, 450, 472, 585, 648
TatI WGTACW 1 cut(s) 91
Tru1I TTAA 3 cut(s) 363, 371, 651
Tru9I TTAA 3 cut(s) 363, 371, 651
TseFI GTSAC 1 cut(s) 721
TseI GCWGC 3 cut(s) 148, 206, 689
Tsp45I GTSAC 1 cut(s) 721
TspDTI ATGAA 3 cut(s) 155, 336, 409
Tth111I GACNNNGTC 1 cut(s) 719
VpaK11BI GGWCC 2 cut(s) 236, 433
XmiI GTMKAC 1 cut(s) 291
XspI CTAG 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.