RchiOBHm_Chr4g0433501

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0008685
Physical Location & Seq
Forward (+)
57599520 .. 57602222
2703 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40201

Sequence Viewer

Length: 657 bp
ATGGGGGCGAAGGCGAAAAAGGCCATGAAAAAGCAGCTGAGCAAAGCTGTTTCTGCTTCTGCTCAAAAACCAGTTGCTAGTTCCGCTACTGCTGCTCCTGATTTTTTGCCATTAGAAGGCGGTCCTGCGCGTAAGCTCCCGGAAGAGAAGCCTAAGGAAGATGTTGCCAGGGTTGTATACATCAGTCGGATACCGCACGGCTTCTATGAAAAAGAAATGCAAGGTTTCTTTGGGCAGTTTGGTGTAATTAAGAGATTAAGAATTGTACGCAACAGAAAGACAGGAAAGTCCAAGCATTTTGGCTTCATCGAGTTTGAGGACCCTGGGGTTGCGAAAATTGTAGCTGAAACTATGGATAATTATTTGTTGTTCGAACACCTTTTGCAAACCCGTCTTATTCCTCCAGAGAAAGTTCACCCGAAGTTGTGGAAAGGTTGCAACGTTCGAGCCAAACCCTTGAACTGGGTTCAAATTGAGCGCAAGAGGCATGATAAGGAAAGAACATTGGAAGAGCACAAAAAACTGGTGGAGAAAATTAAGAAGAGAGATCTGAAGCGTCAAAAGAGAATAGAGGCTGCTGGCATTGAGTATGAGTGCCCAGACATTGTCACTAATGATCAGCCTGCTCCAAAGAAGAAGAAGTTGCGTCTAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

218

Amino Acids

25.05

Weight (kDa)

10.05

Isoelectric Point (pI)

39.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 59 - 126 6.1e-13 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 286
AccI GTMKAC 1 cut(s) 177
AccII CGCG 1 cut(s) 130
AciI CCGC 3 cut(s) 84, 120, 194
AclI AACGTT 1 cut(s) 441
AcuI CTGAAG 1 cut(s) 572
AfaI GTAC 1 cut(s) 267
AfiI CCNNNNNNNGG 2 cut(s) 116, 462
AgsI TTSAA 2 cut(s) 460, 470
AjnI CCWGG 2 cut(s) 167, 322
AluBI AGCT 4 cut(s) 37, 47, 136, 344
AluI AGCT 4 cut(s) 37, 47, 136, 344
Alw21I GWGCWC 1 cut(s) 516
AoxI GGCC 1 cut(s) 21
ApeKI GCWGC 3 cut(s) 34, 92, 575
AspLEI GCGC 2 cut(s) 130, 480
AspS9I GGNCC 2 cut(s) 122, 319
AsuC2I CCSGG 1 cut(s) 140
AsuHPI GGTGA 1 cut(s) 407
AsuII TTCGAA 1 cut(s) 372
AvaII GGWCC 2 cut(s) 122, 319
AxyI CCTNAGG 1 cut(s) 153
BaeGI GKGCMC 1 cut(s) 599
Bbv12I GWGCWC 1 cut(s) 516
BbvI GCAGC 3 cut(s) 46, 79, 562
BceAI ACGGC 1 cut(s) 214
BciT130I CCWGG 2 cut(s) 169, 324
BciVI GTATCC 1 cut(s) 183
BclI TGATCA 1 cut(s) 616
BcnI CCSGG 1 cut(s) 140
BfaI CTAG 1 cut(s) 78
BfuI GTATCC 1 cut(s) 183
BglII AGATCT 1 cut(s) 547
BisI GCNGC 3 cut(s) 35, 93, 576
BlpI GCTNAGC 1 cut(s) 38
BlsI GCNGC 3 cut(s) 36, 94, 577
Bme1390I CCNGG 3 cut(s) 140, 169, 324
Bme18I GGWCC 2 cut(s) 122, 319
BmgT120I GGNCC 2 cut(s) 122, 319
BmiI GGNNCC 1 cut(s) 321
BmrFI CCNGG 3 cut(s) 140, 169, 324
BmrI ACTGGG 1 cut(s) 472
BmuI ACTGGG 1 cut(s) 472
BpmI CTGGAG 1 cut(s) 387
Bpu1102I GCTNAGC 1 cut(s) 38
Bpu14I TTCGAA 1 cut(s) 372
BpuMI CCSGG 1 cut(s) 140
BsaJI CCNNGG 3 cut(s) 168, 322, 323
BsaXI ACNNNNNCTCC 2 cut(s) 79, 109
Bsc4I CCNNNNNNNGG 2 cut(s) 116, 462
Bse1I ACTGG 3 cut(s) 71, 467, 528
Bse21I CCTNAGG 1 cut(s) 153
BseBI CCWGG 2 cut(s) 169, 324
BseDI CCNNGG 3 cut(s) 168, 322, 323
BseLI CCNNNNNNNGG 2 cut(s) 116, 462
BseMII CTCAG 1 cut(s) 29
BseNI ACTGG 3 cut(s) 71, 467, 528
BseSI GKGCMC 1 cut(s) 599
BseXI GCAGC 3 cut(s) 46, 79, 562
Bsh1236I CGCG 1 cut(s) 130
BshFI GGCC 1 cut(s) 23
BsiHKAI GWGCWC 1 cut(s) 516
BsiSI CCGG 1 cut(s) 140
BslI CCNNNNNNNGG 2 cut(s) 116, 462
BsnI GGCC 1 cut(s) 23
Bsp119I TTCGAA 1 cut(s) 372
Bsp1286I GDGCHC 2 cut(s) 516, 599
Bsp143I GATC 2 cut(s) 547, 616
Bsp1720I GCTNAGC 1 cut(s) 38
BspACI CCGC 3 cut(s) 84, 120, 194
BspANI GGCC 1 cut(s) 23
BspCNI CTCAG 1 cut(s) 30
BspFNI CGCG 1 cut(s) 130
BspLI GGNNCC 1 cut(s) 321
BspQI GCTCTTC 1 cut(s) 504
BspT104I TTCGAA 1 cut(s) 372
BsrI ACTGG 3 cut(s) 71, 467, 528
BssECI CCNNGG 3 cut(s) 168, 322, 323
BssMI GATC 2 cut(s) 547, 616
BssNAI GTATAC 1 cut(s) 178
Bst1107I GTATAC 1 cut(s) 178
Bst2UI CCWGG 2 cut(s) 169, 324
Bst6I CTCTTC 3 cut(s) 138, 504, 536
BstBI TTCGAA 1 cut(s) 372
BstC8I GCNNGC 2 cut(s) 580, 624
BstDEI CTNAG 2 cut(s) 38, 153
BstFNI CGCG 1 cut(s) 130
BstHHI GCGC 2 cut(s) 130, 480
BstKTI GATC 2 cut(s) 550, 619
BstMBI GATC 2 cut(s) 547, 616
BstMWI GCNNNNNNNGC 5 cut(s) 20, 53, 83, 92, 484
BstNI CCWGG 2 cut(s) 169, 324
BstSCI CCNGG 3 cut(s) 138, 167, 322
BstSLI GKGCMC 1 cut(s) 599
BstUI CGCG 1 cut(s) 130
BstV1I GCAGC 3 cut(s) 46, 79, 562
BstX2I RGATCY 1 cut(s) 547
BstYI RGATCY 1 cut(s) 547
BstZ17I GTATAC 1 cut(s) 178
Bsu36I CCTNAGG 1 cut(s) 153
BsuI GTATCC 1 cut(s) 183
BsuRI GGCC 1 cut(s) 23
Cac8I GCNNGC 2 cut(s) 580, 624
CfoI GCGC 2 cut(s) 130, 480
Cfr13I GGNCC 2 cut(s) 122, 319
CseI GACGC 2 cut(s) 545, 635
Csp6I GTAC 1 cut(s) 266
CviAII CATG 2 cut(s) 25, 488
CviQI GTAC 1 cut(s) 266
DdeI CTNAG 2 cut(s) 38, 153
DpnI GATC 2 cut(s) 549, 618
DpnII GATC 2 cut(s) 547, 616
DrdI GACNNNNNNGTC 1 cut(s) 286
DseDI GACNNNNNNGTC 1 cut(s) 286
Eam1104I CTCTTC 3 cut(s) 138, 504, 536
EarI CTCTTC 3 cut(s) 138, 504, 536
Eco47I GGWCC 2 cut(s) 122, 319
Eco57I CTGAAG 1 cut(s) 572
Eco81I CCTNAGG 1 cut(s) 153
EcoO109I RGGNCCY 1 cut(s) 319
EcoRII CCWGG 2 cut(s) 167, 322
FaeI CATG 2 cut(s) 28, 491
FaiI YATR 6 cut(s) 26, 178, 207, 353, 489, 591
FatI CATG 2 cut(s) 24, 487
FbaI TGATCA 1 cut(s) 616
FblI GTMKAC 1 cut(s) 177
Fnu4HI GCNGC 3 cut(s) 35, 93, 576
Fsp4HI GCNGC 3 cut(s) 35, 93, 576
FspBI CTAG 1 cut(s) 78
GlaI GCGC 2 cut(s) 129, 479
GluI GCNGC 3 cut(s) 35, 93, 576
GsuI CTGGAG 1 cut(s) 387
HaeIII GGCC 1 cut(s) 23
HapII CCGG 1 cut(s) 140
HgaI GACGC 2 cut(s) 545, 635
HhaI GCGC 2 cut(s) 130, 480
Hin1II CATG 2 cut(s) 28, 491
Hin6I GCGC 2 cut(s) 128, 478
HinP1I GCGC 2 cut(s) 128, 478
HpaII CCGG 1 cut(s) 140
HphI GGTGA 1 cut(s) 407
Hpy166II GTNNAC 2 cut(s) 178, 415
Hpy188I TCNGA 2 cut(s) 189, 552
Hpy188III TCNNGA 2 cut(s) 98, 404
Hpy8I GTNNAC 2 cut(s) 178, 415
HpyAV CCTTC 2 cut(s) 4, 110
HpyCH4IV ACGT 1 cut(s) 441
HpyCH4V TGCA 3 cut(s) 220, 385, 438
HpyF10VI GCNNNNNNNGC 5 cut(s) 20, 53, 83, 92, 484
HpyF3I CTNAG 2 cut(s) 38, 153
HpySE526I ACGT 1 cut(s) 441
Hsp92II CATG 2 cut(s) 28, 491
HspAI GCGC 2 cut(s) 128, 478
Ksp22I TGATCA 1 cut(s) 616
Kzo9I GATC 2 cut(s) 547, 616
LguI GCTCTTC 1 cut(s) 504
LmnI GCTCC 3 cut(s) 100, 141, 631
Lsp1109I GCAGC 3 cut(s) 46, 79, 562
MaeI CTAG 1 cut(s) 78
MaeII ACGT 1 cut(s) 441
MaeIII GTNAC 1 cut(s) 607
MalI GATC 2 cut(s) 549, 618
MboI GATC 2 cut(s) 547, 616
MboII GAAGA 6 cut(s) 155, 170, 521, 553, 646, 649
MflI RGATCY 1 cut(s) 547
MhlI GDGCHC 2 cut(s) 516, 599
MluCI AATT 6 cut(s) 246, 261, 336, 358, 471, 534
MmeI TCCRAC 1 cut(s) 167
MnlI CCTC 4 cut(s) 310, 411, 477, 565
MseI TTAA 3 cut(s) 249, 257, 537
MspA1I CMGCKG 1 cut(s) 37
MspI CCGG 1 cut(s) 140
MspR9I CCNGG 3 cut(s) 140, 169, 324
MvaI CCWGG 2 cut(s) 169, 324
MvnI CGCG 1 cut(s) 130
MwoI GCNNNNNNNGC 5 cut(s) 20, 53, 83, 92, 484
NciI CCSGG 1 cut(s) 140
NdeII GATC 2 cut(s) 547, 616
NlaIII CATG 2 cut(s) 28, 491
NlaIV GGNNCC 1 cut(s) 321
NmuCI GTSAC 1 cut(s) 607
NspV TTCGAA 1 cut(s) 372
PasI CCCWGGG 1 cut(s) 323
PciSI GCTCTTC 1 cut(s) 504
PflFI GACNNNGTC 1 cut(s) 605
PfoI TCCNGGA 1 cut(s) 138
PkrI GCNGC 3 cut(s) 36, 94, 577
PpuMI RGGWCCY 1 cut(s) 319
Psp1406I AACGTT 1 cut(s) 441
Psp5II RGGWCCY 1 cut(s) 319
Psp6I CCWGG 2 cut(s) 167, 322
PspGI CCWGG 2 cut(s) 167, 322
PspN4I GGNNCC 1 cut(s) 321
PspPI GGNCC 2 cut(s) 122, 319
PspPPI RGGWCCY 1 cut(s) 319
PsuI RGATCY 1 cut(s) 547
PsyI GACNNNGTC 1 cut(s) 605
PvuII CAGCTG 1 cut(s) 37
RsaI GTAC 1 cut(s) 267
RsaNI GTAC 1 cut(s) 266
SapI GCTCTTC 1 cut(s) 504
SaqAI TTAA 3 cut(s) 249, 257, 537
SatI GCNGC 3 cut(s) 35, 93, 576
Sau3AI GATC 2 cut(s) 547, 616
Sau96I GGNCC 2 cut(s) 122, 319
ScrFI CCNGG 3 cut(s) 140, 169, 324
SduI GDGCHC 2 cut(s) 516, 599
SetI ASST 8 cut(s) 39, 49, 138, 226, 346, 381, 436, 444
SfuI TTCGAA 1 cut(s) 372
SinI GGWCC 2 cut(s) 122, 319
Sse9I AATT 6 cut(s) 246, 261, 336, 358, 471, 534
SsiI CCGC 3 cut(s) 84, 120, 194
SspMI CTAG 1 cut(s) 78
StyD4I CCNGG 3 cut(s) 138, 167, 322
TaiI ACGT 1 cut(s) 444
TaqI TCGA 3 cut(s) 309, 372, 445
TasI AATT 6 cut(s) 246, 261, 336, 358, 471, 534
Tru1I TTAA 3 cut(s) 249, 257, 537
Tru9I TTAA 3 cut(s) 249, 257, 537
TseFI GTSAC 1 cut(s) 607
TseI GCWGC 3 cut(s) 34, 92, 575
Tsp45I GTSAC 1 cut(s) 607
TspDTI ATGAA 3 cut(s) 41, 222, 295
Tth111I GACNNNGTC 1 cut(s) 605
VpaK11BI GGWCC 2 cut(s) 122, 319
XmiI GTMKAC 1 cut(s) 177
XspI CTAG 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.