Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0008685

Physical Location & Seq

Genomic Coordinates Reverse (-)

20683650 .. 20685758

Gene Structure 2109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g21100.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGAAAAAACAATTGAGCAAAGCCTCTGCTCAATTATCAGCTTCTTCTCACAAAAATAAAGAAGCTGCTGCTCCTGCTTCTGCAATTGTCCCTGCTTCTACCGCTGCTGAATTCTTGCCATTAGAAGGCGGTCCAGCGCGGAAACTCCCCCAAGAAAAGCCCACGGAGGATGTTGCTACTGTTTTATACATTGGTCGGATACCTCATGGCTTCTATGAGAAAGAAATGGAAGGATTTTTTGGGCAATTTGGTTCGATTAAGAGATTAAGAATTGCGCGTAACAAAAAGACAGGGAAATCAAAGCATTTTGGCTTCATTGAGTTTGAAGAACCTCAGGTGGCGAAAGTTGTAGCTGACACTATGCATAACTATTTGTTGTTCGAACACGTGTTGCAAGTCCATCTTATTCCTCCGCAGAAAGTTCACCCGAAATTATGGAAAGGTTTCAACTACCGAGTCAGACCCGTGAACTGGGTTCAAATTGAGCGGAAGAGACAAGACAAGGAAAGAACAGTGGAAGAGCACAAGAAGTTAATGGGGAAGATTGTGAAGAGAGATCTGAAGCGTCAAAAGAAAATTGAGGCTGCTGGTATTGATTATAAATGCCCAGAAATTGTGGGTAGTAGTGAGGAGCCTGCTCCAAAGAAAAGGAAGACCGACCGAAAGAAGGTTGTTTCTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

228

Amino Acids

25.87

Weight (kDa)

10.0

Isoelectric Point (pI)

52.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04600
fragaria_vesca	FvH4_5g27351
malus_domestica	MD08G1243300.v1.1 MD15G1437100.v1.1
prunus_persica	Prupe.1G580700_v2.0.a1 Prupe.1G580700_v2.0.a1 Prupe.1G580700_v2.0.a1 Prupe.1G580700_v2.0.a1
pyrus_communis	pycom08g21100 pycom15g38550
rosa_chinensis	RchiOBHm_Chr4g0433501
rosa_laevigata	RLG00000006750
rosa_multiflora	Rmu_sc0000312.1_g000003 Rmu_sc0000759.1_g000001 Rmu_sc0018241.1_g000001
rosa_roxburghii	Rroxscaffold_5G00375020
rosa_rugosa	Rorug04G0269100
rosa_samantha	Rh4AG323700 Rh4BG331700 Rh4CG347000 Rh4DG328200
rosa_wichuraiana	Rw0G020110 Rw4G028050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	600
AccBSI	CCGCTC	1 cut(s)	487
AccII	CGCG	2 cut(s)	139, 277
AciI	CCGC	5 cut(s)	102, 129, 139, 413, 487
AcsI	RAATTY	1 cut(s)	110
AcuI	CTGAAG	1 cut(s)	581
AcvI	CACGTG	1 cut(s)	388
AfiI	CCNNNNNNNGG	3 cut(s)	125, 471, 667
AflIII	ACRYGT	2 cut(s)	385, 387
AgsI	TTSAA	3 cut(s)	326, 448, 479
AjuI	GAANNNNNNNTTGG	2 cut(s)	222, 254
AluBI	AGCT	3 cut(s)	41, 65, 353
AluI	AGCT	3 cut(s)	41, 65, 353
Alw21I	GWGCWC	1 cut(s)	525
Alw26I	GTCTC	1 cut(s)	487
ApeKI	GCWGC	4 cut(s)	65, 68, 104, 584
ApoI	RAATTY	1 cut(s)	110
Asp700I	GAANNNNTTC	1 cut(s)	443
AspLEI	GCGC	2 cut(s)	139, 277
AspS9I	GGNCC	1 cut(s)	131
AsuHPI	GGTGA	1 cut(s)	416
AsuII	TTCGAA	1 cut(s)	381
AvaII	GGWCC	1 cut(s)	131
AxyI	CCTNAGG	1 cut(s)	333
BbrPI	CACGTG	1 cut(s)	388
BbsI	GAAGAC	1 cut(s)	659
Bbv12I	GWGCWC	1 cut(s)	525
BbvI	GCAGC	4 cut(s)	52, 55, 91, 571
BccI	CCATC	1 cut(s)	408
BciVI	GTATCC	1 cut(s)	192
BcoDI	GTCTC	1 cut(s)	487
BfuI	GTATCC	1 cut(s)	192
BglII	AGATCT	1 cut(s)	556
BisI	GCNGC	4 cut(s)	66, 69, 105, 585
BlsI	GCNGC	4 cut(s)	67, 70, 106, 586
Bme18I	GGWCC	1 cut(s)	131
BmgT120I	GGNCC	1 cut(s)	131
BmiI	GGNNCC	1 cut(s)	633
BmrI	ACTGGG	1 cut(s)	481
BmuI	ACTGGG	1 cut(s)	481
BpiI	GAAGAC	1 cut(s)	659
Bpu14I	TTCGAA	1 cut(s)	381
BsaAI	YACGTR	1 cut(s)	388
BsaJI	CCNNGG	1 cut(s)	162
Bsc4I	CCNNNNNNNGG	3 cut(s)	125, 471, 667
Bse1I	ACTGG	1 cut(s)	476
Bse21I	CCTNAGG	1 cut(s)	333
BseDI	CCNNGG	1 cut(s)	162
BseGI	GGATG	1 cut(s)	175
BseLI	CCNNNNNNNGG	3 cut(s)	125, 471, 667
BseMII	CTCAG	1 cut(s)	347
BseNI	ACTGG	1 cut(s)	476
BseRI	GAGGAG	1 cut(s)	644
BseXI	GCAGC	4 cut(s)	52, 55, 91, 571
Bsh1236I	CGCG	2 cut(s)	139, 277
Bsh1285I	CGRYCG	1 cut(s)	661
BsiEI	CGRYCG	1 cut(s)	661
BsiHKAI	GWGCWC	1 cut(s)	525
BslFI	GGGAC	1 cut(s)	74
BslI	CCNNNNNNNGG	3 cut(s)	125, 471, 667
BsmAI	GTCTC	1 cut(s)	487
BsmFI	GGGAC	1 cut(s)	74
Bsp119I	TTCGAA	1 cut(s)	381
Bsp1286I	GDGCHC	1 cut(s)	525
Bsp143I	GATC	1 cut(s)	556
BspACI	CCGC	5 cut(s)	102, 129, 139, 413, 487
BspCNI	CTCAG	1 cut(s)	346
BspFNI	CGCG	2 cut(s)	139, 277
BspLI	GGNNCC	1 cut(s)	633
BspQI	GCTCTTC	1 cut(s)	513
BspT104I	TTCGAA	1 cut(s)	381
BsrBI	CCGCTC	1 cut(s)	487
BsrI	ACTGG	1 cut(s)	476
BssECI	CCNNGG	1 cut(s)	162
BssMI	GATC	1 cut(s)	556
Bst4CI	ACNGT	2 cut(s)	181, 514
Bst6I	CTCTTC	3 cut(s)	485, 513, 545
BstBAI	YACGTR	1 cut(s)	388
BstBI	TTCGAA	1 cut(s)	381
BstC8I	GCNNGC	1 cut(s)	636
BstDEI	CTNAG	1 cut(s)	333
BstDSI	CCRYGG	1 cut(s)	162
BstF5I	GGATG	1 cut(s)	175
BstFNI	CGCG	2 cut(s)	139, 277
BstHHI	GCGC	2 cut(s)	139, 277
BstKTI	GATC	1 cut(s)	559
BstMAI	GTCTC	1 cut(s)	487
BstMBI	GATC	1 cut(s)	556
BstMCI	CGRYCG	1 cut(s)	661
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 101
BstUI	CGCG	2 cut(s)	139, 277
BstV1I	GCAGC	4 cut(s)	52, 55, 91, 571
BstV2I	GAAGAC	1 cut(s)	659
BstX2I	RGATCY	1 cut(s)	556
BstYI	RGATCY	1 cut(s)	556
Bsu36I	CCTNAGG	1 cut(s)	333
BsuI	GTATCC	1 cut(s)	192
BtgI	CCRYGG	1 cut(s)	162
BtsCI	GGATG	1 cut(s)	175
BtsIMutI	CAGTG	1 cut(s)	519
Cac8I	GCNNGC	1 cut(s)	636
CfoI	GCGC	2 cut(s)	139, 277
Cfr13I	GGNCC	1 cut(s)	131
CseI	GACGC	1 cut(s)	554
CviAII	CATG	1 cut(s)	206
CviJI	RGCY	9 cut(s)	23, 41, 65, 160, 210, 312, 353, 584, 634
CviKI_1	RGCY	9 cut(s)	23, 41, 65, 160, 210, 312, 353, 584, 634
DdeI	CTNAG	1 cut(s)	333
DpnI	GATC	1 cut(s)	558
DpnII	GATC	1 cut(s)	556
Eam1104I	CTCTTC	3 cut(s)	485, 513, 545
EarI	CTCTTC	3 cut(s)	485, 513, 545
Eco47I	GGWCC	1 cut(s)	131
Eco57I	CTGAAG	1 cut(s)	581
Eco72I	CACGTG	1 cut(s)	388
Eco81I	CCTNAGG	1 cut(s)	333
EcoRI	GAATTC	1 cut(s)	110
EcoT22I	ATGCAT	1 cut(s)	366
FaeI	CATG	1 cut(s)	209
FaiI	YATR	7 cut(s)	187, 207, 216, 362, 366, 436, 600
FalI	AAGNNNNNCTT	2 cut(s)	387, 419
FaqI	GGGAC	1 cut(s)	74
FatI	CATG	1 cut(s)	205
Fnu4HI	GCNGC	4 cut(s)	66, 69, 105, 585
FokI	GGATG	1 cut(s)	182
Fsp4HI	GCNGC	4 cut(s)	66, 69, 105, 585
GlaI	GCGC	2 cut(s)	138, 276
GluI	GCNGC	4 cut(s)	66, 69, 105, 585
HgaI	GACGC	1 cut(s)	554
HhaI	GCGC	2 cut(s)	139, 277
Hin1II	CATG	1 cut(s)	209
Hin6I	GCGC	2 cut(s)	137, 275
HinP1I	GCGC	2 cut(s)	137, 275
HinfI	GANTC	1 cut(s)	456
HphI	GGTGA	1 cut(s)	416
Hpy166II	GTNNAC	2 cut(s)	424, 469
Hpy188I	TCNGA	3 cut(s)	198, 461, 561
Hpy8I	GTNNAC	2 cut(s)	424, 469
HpyAV	CCTTC	3 cut(s)	119, 224, 661
HpyCH4III	ACNGT	2 cut(s)	181, 514
HpyCH4IV	ACGT	1 cut(s)	387
HpyCH4V	TGCA	3 cut(s)	83, 364, 394
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 101
HpyF3I	CTNAG	1 cut(s)	333
HpySE526I	ACGT	1 cut(s)	387
Hsp92II	CATG	1 cut(s)	209
HspAI	GCGC	2 cut(s)	137, 275
Kzo9I	GATC	1 cut(s)	556
LguI	GCTCTTC	1 cut(s)	513
LmnI	GCTCC	3 cut(s)	76, 631, 643
LpnPI	CCDG	9 cut(s)	87, 105, 147, 276, 320, 457, 573, 621, 648
Lsp1109I	GCAGC	4 cut(s)	52, 55, 91, 571
MaeII	ACGT	1 cut(s)	387
MaeIII	GTNAC	1 cut(s)	278
MalI	GATC	1 cut(s)	558
MbiI	CCGCTC	1 cut(s)	487
MboI	GATC	1 cut(s)	556
MboII	GAAGA	7 cut(s)	36, 338, 502, 530, 553, 562, 664
MfeI	CAATTG	2 cut(s)	11, 84
MflI	RGATCY	1 cut(s)	556
MhlI	GDGCHC	1 cut(s)	525
MlyI	GAGTC	1 cut(s)	465
MmeI	TCCRAC	1 cut(s)	176
MnlI	CCTC	7 cut(s)	34, 160, 213, 342, 420, 574, 622
Mph1103I	ATGCAT	1 cut(s)	366
MroXI	GAANNNNTTC	1 cut(s)	443
MseI	TTAA	3 cut(s)	258, 266, 533
MspA1I	CMGCKG	1 cut(s)	104
MunI	CAATTG	2 cut(s)	11, 84
MvnI	CGCG	2 cut(s)	139, 277
MwoI	GCNNNNNNNGC	2 cut(s)	74, 101
NdeII	GATC	1 cut(s)	556
NlaIII	CATG	1 cut(s)	209
NlaIV	GGNNCC	1 cut(s)	633
NsiI	ATGCAT	1 cut(s)	366
NspV	TTCGAA	1 cut(s)	381
PciSI	GCTCTTC	1 cut(s)	513
PdmI	GAANNNNTTC	1 cut(s)	443
PkrI	GCNGC	4 cut(s)	67, 70, 106, 586
PleI	GAGTC	1 cut(s)	464
PmaCI	CACGTG	1 cut(s)	388
PmlI	CACGTG	1 cut(s)	388
PpsI	GAGTC	1 cut(s)	464
Ppu21I	YACGTR	1 cut(s)	388
PsiI	TTATAA	1 cut(s)	600
PspCI	CACGTG	1 cut(s)	388
PspN4I	GGNNCC	1 cut(s)	633
PspPI	GGNCC	1 cut(s)	131
PsuI	RGATCY	1 cut(s)	556
SapI	GCTCTTC	1 cut(s)	513
SaqAI	TTAA	3 cut(s)	258, 266, 533
SatI	GCNGC	4 cut(s)	66, 69, 105, 585
Sau3AI	GATC	1 cut(s)	556
Sau96I	GGNCC	1 cut(s)	131
SchI	GAGTC	1 cut(s)	465
SduI	GDGCHC	1 cut(s)	525
SetI	ASST	9 cut(s)	43, 67, 205, 334, 339, 355, 390, 445, 672
SfuI	TTCGAA	1 cut(s)	381
SinI	GGWCC	1 cut(s)	131
SsiI	CCGC	5 cut(s)	102, 129, 139, 413, 487
TaaI	ACNGT	2 cut(s)	181, 514
TaiI	ACGT	1 cut(s)	390
TaqI	TCGA	2 cut(s)	254, 381
TaqII	GACCGA	2 cut(s)	671, 675
Tru1I	TTAA	3 cut(s)	258, 266, 533
Tru9I	TTAA	3 cut(s)	258, 266, 533
TscAI	CASTG	1 cut(s)	519
TseI	GCWGC	4 cut(s)	65, 68, 104, 584
TspDTI	ATGAA	2 cut(s)	17, 304
TspGWI	ACGGA	1 cut(s)	179
TspRI	CASTG	1 cut(s)	519
VpaK11BI	GGWCC	1 cut(s)	131
XapI	RAATTY	1 cut(s)	110
XmnI	GAANNNNTTC	1 cut(s)	443
Zsp2I	ATGCAT	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.