Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008685

Physical Location & Seq

Genomic Coordinates Reverse (-)

47208542 .. 47211837

Gene Structure 3296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G580700.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGGGGCAAAGGCGAAAAAGGCAATGAAGAAGCAGCTGAGCAAAGCTTCTGCTCAATTATCAGTATCTACTCACAATAAAGAAGCTGCTGCTGCTGCTGCTGATTTCTTGCCATTGGAAGGCGGCCCTGCGCGTAAGCTCCCCGAAGAAAAGCCCAAGGAGGATGTCGCCAAGGTGTTATACATTGGTCGGATACCTCACGGTTTCTATGAGAAGGAAATGGAAGGATTTTTCGGGCAATTTGGTGTGATTAAGAGACTGAGGATTGCACGTAACAAAAAGACAGGAAAATCAAAGCACTTTGGCTTCATTGAGTTTGAGGACCCTGGGGTGGCGAAAGTTGTAGCTGAAACTATGCATAATTATTTGTTGTTCGAACACCTTTTGCAAGTCCGTCTTATTCCTCCACAGCAAGTTCACCCAAAATTATGGAAAGGTTTCAACTACCGAGTCAAACCCTTGAACTGGGTTCAAATTGAGCGGAAGAGGCATGACAAGGAAAGGACATTGGAAGAGCACAAGAAGTTGGTGGAGAAGATTTTGAAGAGAGATCTGAAGCGTCAAAAGAGAATTGAGGCTGCTGGTATTGATTATGAATGCCCAGAAATTGTTGGTAGTATTGAACAGCCTGCTCCAAAGAAAAGGAAAACTGACCGAAAGAAGGTTGACTTGATAGGGATGAAGAGCAAACACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

232

Amino Acids

26.58

Weight (kDa)

9.98

Isoelectric Point (pI)

46.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04600
fragaria_vesca	FvH4_5g27351
malus_domestica	MD08G1243300.v1.1 MD15G1437100.v1.1
prunus_persica	Prupe.1G580700_v2.0.a1 Prupe.1G580700_v2.0.a1 Prupe.1G580700_v2.0.a1 Prupe.1G580700_v2.0.a1
pyrus_communis	pycom08g21100 pycom15g38550
rosa_chinensis	RchiOBHm_Chr4g0433501
rosa_laevigata	RLG00000006750
rosa_multiflora	Rmu_sc0000312.1_g000003 Rmu_sc0000759.1_g000001 Rmu_sc0018241.1_g000001
rosa_roxburghii	Rroxscaffold_5G00375020
rosa_rugosa	Rorug04G0269100
rosa_samantha	Rh4AG323700 Rh4BG331700 Rh4CG347000 Rh4DG328200
rosa_wichuraiana	Rw0G020110 Rw4G028050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	481
AccII	CGCG	1 cut(s)	133
AciI	CCGC	2 cut(s)	123, 481
AcuI	CTGAAG	1 cut(s)	575
AfiI	CCNNNNNNNGG	4 cut(s)	119, 331, 465, 661
AgsI	TTSAA	5 cut(s)	442, 463, 473, 544, 623
AjnI	CCWGG	1 cut(s)	325
AluBI	AGCT	5 cut(s)	37, 47, 86, 139, 347
AluI	AGCT	5 cut(s)	37, 47, 86, 139, 347
Alw21I	GWGCWC	1 cut(s)	519
Alw26I	GTCTC	1 cut(s)	250
AoxI	GGCC	1 cut(s)	124
ApeKI	GCWGC	7 cut(s)	34, 86, 89, 92, 95, 98, 578
Asp700I	GAANNNNTTC	1 cut(s)	437
AspLEI	GCGC	1 cut(s)	133
AspS9I	GGNCC	2 cut(s)	125, 322
AsuHPI	GGTGA	1 cut(s)	410
AsuII	TTCGAA	1 cut(s)	375
AvaII	GGWCC	1 cut(s)	322
Bbv12I	GWGCWC	1 cut(s)	519
BbvI	GCAGC	7 cut(s)	46, 73, 76, 79, 82, 85, 565
BciT130I	CCWGG	1 cut(s)	327
BciVI	GTATCC	1 cut(s)	186
BcoDI	GTCTC	1 cut(s)	250
BfaI	CTAG	1 cut(s)	694
BfuI	GTATCC	1 cut(s)	186
BglII	AGATCT	1 cut(s)	550
BisI	GCNGC	8 cut(s)	35, 87, 90, 93, 96, 99, 124, 579
BlpI	GCTNAGC	1 cut(s)	38
BlsI	GCNGC	8 cut(s)	36, 88, 91, 94, 97, 100, 125, 580
Bme1390I	CCNGG	1 cut(s)	327
Bme18I	GGWCC	1 cut(s)	322
BmgT120I	GGNCC	2 cut(s)	125, 322
BmiI	GGNNCC	1 cut(s)	324
BmrFI	CCNGG	1 cut(s)	327
BmrI	ACTGGG	1 cut(s)	475
BmuI	ACTGGG	1 cut(s)	475
Bpu1102I	GCTNAGC	1 cut(s)	38
Bpu14I	TTCGAA	1 cut(s)	375
BsaAI	YACGTR	1 cut(s)	272
BsaJI	CCNNGG	4 cut(s)	156, 171, 325, 326
Bsc4I	CCNNNNNNNGG	4 cut(s)	119, 331, 465, 661
Bse1I	ACTGG	1 cut(s)	470
Bse3DI	GCAATG	1 cut(s)	30
BseBI	CCWGG	1 cut(s)	327
BseDI	CCNNGG	4 cut(s)	156, 171, 325, 326
BseGI	GGATG	2 cut(s)	169, 684
BseLI	CCNNNNNNNGG	4 cut(s)	119, 331, 465, 661
BseMI	GCAATG	1 cut(s)	30
BseMII	CTCAG	2 cut(s)	29, 251
BseNI	ACTGG	1 cut(s)	470
BseXI	GCAGC	7 cut(s)	46, 73, 76, 79, 82, 85, 565
Bsh1236I	CGCG	1 cut(s)	133
BshFI	GGCC	1 cut(s)	126
BsiHKAI	GWGCWC	1 cut(s)	519
BslI	CCNNNNNNNGG	4 cut(s)	119, 331, 465, 661
BsmAI	GTCTC	1 cut(s)	250
BsmI	GAATGC	1 cut(s)	602
BsnI	GGCC	1 cut(s)	126
Bsp119I	TTCGAA	1 cut(s)	375
Bsp1286I	GDGCHC	1 cut(s)	519
Bsp143I	GATC	1 cut(s)	550
Bsp1720I	GCTNAGC	1 cut(s)	38
BspACI	CCGC	2 cut(s)	123, 481
BspANI	GGCC	1 cut(s)	126
BspCNI	CTCAG	2 cut(s)	30, 252
BspFNI	CGCG	1 cut(s)	133
BspLI	GGNNCC	1 cut(s)	324
BspQI	GCTCTTC	2 cut(s)	507, 677
BspT104I	TTCGAA	1 cut(s)	375
BsrBI	CCGCTC	1 cut(s)	481
BsrDI	GCAATG	1 cut(s)	30
BsrI	ACTGG	1 cut(s)	470
BssECI	CCNNGG	4 cut(s)	156, 171, 325, 326
BssMI	GATC	1 cut(s)	550
BssT1I	CCWWGG	2 cut(s)	156, 171
Bst2UI	CCWGG	1 cut(s)	327
Bst4CI	ACNGT	1 cut(s)	203
Bst6I	CTCTTC	4 cut(s)	479, 507, 539, 677
BstBAI	YACGTR	1 cut(s)	272
BstBI	TTCGAA	1 cut(s)	375
BstC8I	GCNNGC	1 cut(s)	630
BstDEI	CTNAG	2 cut(s)	38, 260
BstF5I	GGATG	2 cut(s)	169, 684
BstFNI	CGCG	1 cut(s)	133
BstHHI	GCGC	1 cut(s)	133
BstKTI	GATC	1 cut(s)	553
BstMAI	GTCTC	1 cut(s)	250
BstMBI	GATC	1 cut(s)	550
BstMWI	GCNNNNNNNGC	5 cut(s)	20, 92, 95, 98, 487
BstNI	CCWGG	1 cut(s)	327
BstSCI	CCNGG	1 cut(s)	325
BstUI	CGCG	1 cut(s)	133
BstV1I	GCAGC	7 cut(s)	46, 73, 76, 79, 82, 85, 565
BstX2I	RGATCY	1 cut(s)	550
BstXI	CCANNNNNNTGG	1 cut(s)	429
BstYI	RGATCY	1 cut(s)	550
BsuI	GTATCC	1 cut(s)	186
BsuRI	GGCC	1 cut(s)	126
BtsCI	GGATG	2 cut(s)	169, 684
Cac8I	GCNNGC	1 cut(s)	630
CfoI	GCGC	1 cut(s)	133
Cfr13I	GGNCC	2 cut(s)	125, 322
CseI	GACGC	1 cut(s)	548
CviAII	CATG	1 cut(s)	491
DdeI	CTNAG	2 cut(s)	38, 260
DpnI	GATC	1 cut(s)	552
DpnII	GATC	1 cut(s)	550
Eam1104I	CTCTTC	4 cut(s)	479, 507, 539, 677
EarI	CTCTTC	4 cut(s)	479, 507, 539, 677
Eco130I	CCWWGG	2 cut(s)	156, 171
Eco47I	GGWCC	1 cut(s)	322
Eco57I	CTGAAG	1 cut(s)	575
EcoO109I	RGGNCCY	1 cut(s)	322
EcoRII	CCWGG	1 cut(s)	325
EcoT14I	CCWWGG	2 cut(s)	156, 171
EcoT22I	ATGCAT	1 cut(s)	360
ErhI	CCWWGG	2 cut(s)	156, 171
FaeI	CATG	1 cut(s)	494
FaiI	YATR	7 cut(s)	181, 210, 356, 360, 430, 492, 594
FalI	AAGNNNNNCTT	4 cut(s)	381, 413, 653, 685
FatI	CATG	1 cut(s)	490
Fnu4HI	GCNGC	8 cut(s)	35, 87, 90, 93, 96, 99, 124, 579
FokI	GGATG	2 cut(s)	176, 691
Fsp4HI	GCNGC	8 cut(s)	35, 87, 90, 93, 96, 99, 124, 579
FspBI	CTAG	1 cut(s)	694
GlaI	GCGC	1 cut(s)	132
GluI	GCNGC	8 cut(s)	35, 87, 90, 93, 96, 99, 124, 579
HaeIII	GGCC	1 cut(s)	126
HgaI	GACGC	1 cut(s)	548
HhaI	GCGC	1 cut(s)	133
Hin1II	CATG	1 cut(s)	494
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HincII	GTYRAC	1 cut(s)	667
HindII	GTYRAC	1 cut(s)	667
HindIII	AAGCTT	1 cut(s)	45
HinfI	GANTC	1 cut(s)	450
HphI	GGTGA	1 cut(s)	410
Hpy166II	GTNNAC	2 cut(s)	418, 667
Hpy188I	TCNGA	2 cut(s)	192, 555
Hpy8I	GTNNAC	2 cut(s)	418, 667
HpyAV	CCTTC	4 cut(s)	113, 208, 218, 655
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4IV	ACGT	1 cut(s)	271
HpyCH4V	TGCA	3 cut(s)	269, 358, 388
HpyF10VI	GCNNNNNNNGC	5 cut(s)	20, 92, 95, 98, 487
HpyF3I	CTNAG	2 cut(s)	38, 260
HpySE526I	ACGT	1 cut(s)	271
Hsp92II	CATG	1 cut(s)	494
HspAI	GCGC	1 cut(s)	131
Kzo9I	GATC	1 cut(s)	550
LguI	GCTCTTC	2 cut(s)	507, 677
LmnI	GCTCC	2 cut(s)	144, 637
LpnPI	CCDG	8 cut(s)	141, 270, 312, 339, 451, 567, 615, 642
Lsp1109I	GCAGC	7 cut(s)	46, 73, 76, 79, 82, 85, 565
MaeI	CTAG	1 cut(s)	694
MaeII	ACGT	1 cut(s)	271
MaeIII	GTNAC	1 cut(s)	272
MalI	GATC	1 cut(s)	552
MbiI	CCGCTC	1 cut(s)	481
MboI	GATC	1 cut(s)	550
MboII	GAAGA	7 cut(s)	40, 158, 496, 524, 547, 556, 694
MflI	RGATCY	1 cut(s)	550
MhlI	GDGCHC	1 cut(s)	519
MluCI	AATT	7 cut(s)	56, 239, 361, 425, 474, 570, 606
MlyI	GAGTC	1 cut(s)	459
MmeI	TCCRAC	1 cut(s)	170
MnlI	CCTC	7 cut(s)	154, 207, 255, 313, 414, 480, 568
Mph1103I	ATGCAT	1 cut(s)	360
MroXI	GAANNNNTTC	1 cut(s)	437
MseI	TTAA	1 cut(s)	252
MspA1I	CMGCKG	1 cut(s)	37
MspR9I	CCNGG	1 cut(s)	327
Mva1269I	GAATGC	1 cut(s)	602
MvaI	CCWGG	1 cut(s)	327
MvnI	CGCG	1 cut(s)	133
MwoI	GCNNNNNNNGC	5 cut(s)	20, 92, 95, 98, 487
NdeII	GATC	1 cut(s)	550
NlaIII	CATG	1 cut(s)	494
NlaIV	GGNNCC	1 cut(s)	324
NsiI	ATGCAT	1 cut(s)	360
NspV	TTCGAA	1 cut(s)	375
PasI	CCCWGGG	1 cut(s)	326
PciSI	GCTCTTC	2 cut(s)	507, 677
PctI	GAATGC	1 cut(s)	602
PdmI	GAANNNNTTC	1 cut(s)	437
PkrI	GCNGC	8 cut(s)	36, 88, 91, 94, 97, 100, 125, 580
PleI	GAGTC	1 cut(s)	458
PpsI	GAGTC	1 cut(s)	458
Ppu21I	YACGTR	1 cut(s)	272
PpuMI	RGGWCCY	1 cut(s)	322
Psp5II	RGGWCCY	1 cut(s)	322
Psp6I	CCWGG	1 cut(s)	325
PspGI	CCWGG	1 cut(s)	325
PspN4I	GGNNCC	1 cut(s)	324
PspPI	GGNCC	2 cut(s)	125, 322
PspPPI	RGGWCCY	1 cut(s)	322
PsuI	RGATCY	1 cut(s)	550
PvuII	CAGCTG	1 cut(s)	37
SapI	GCTCTTC	2 cut(s)	507, 677
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	8 cut(s)	35, 87, 90, 93, 96, 99, 124, 579
Sau3AI	GATC	1 cut(s)	550
Sau96I	GGNCC	2 cut(s)	125, 322
SchI	GAGTC	1 cut(s)	459
ScrFI	CCNGG	1 cut(s)	327
SduI	GDGCHC	1 cut(s)	519
SfuI	TTCGAA	1 cut(s)	375
SinI	GGWCC	1 cut(s)	322
Sse9I	AATT	7 cut(s)	56, 239, 361, 425, 474, 570, 606
SsiI	CCGC	2 cut(s)	123, 481
SspMI	CTAG	1 cut(s)	694
StyD4I	CCNGG	1 cut(s)	325
StyI	CCWWGG	2 cut(s)	156, 171
TaaI	ACNGT	1 cut(s)	203
TaiI	ACGT	1 cut(s)	274
TaqI	TCGA	1 cut(s)	375
TaqII	GACCGA	1 cut(s)	669
TasI	AATT	7 cut(s)	56, 239, 361, 425, 474, 570, 606
TauI	GCSGC	1 cut(s)	126
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TseI	GCWGC	7 cut(s)	34, 86, 89, 92, 95, 98, 578
TspDTI	ATGAA	4 cut(s)	41, 298, 609, 695
TspGWI	ACGGA	1 cut(s)	383
VpaK11BI	GGWCC	1 cut(s)	322
XmnI	GAANNNNTTC	1 cut(s)	437
XspI	CTAG	1 cut(s)	694
Zsp2I	ATGCAT	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.