RLG00000006750

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0008685
Physical Location & Seq
Reverse (-)
10186930 .. 10189297
2368 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006750

Sequence Viewer

Length: 639 bp
ATGGGGGCGAAGGCGAAAAAGGCCATGAAAAAGCAGCTGAGCAAAGCTGTTTCTGCTTCTGCTCAAAAACCAGTTGCTAGTTCTGCTACTGCCGCTCCTGATTTCTTGCCATTAGAAGGCGGTCCTGCACGTAAGCTCCCGGAAGAGAAGCCTAAGGAAGATGTTGCCAGGGTTGTATACATCAGTCGGATACCACATGGCTTCTATGAAAAAGAAATGCAAGGTTTCTTTGGGCAGTTTGGTGTAATTAAGAGATTAAGAATTGTACGCAACAGAAAGACAGGAAAGTCCAAGCATTTTGGCTTCATCGAGTTTGAGGACCCTGGGGTTGCGAAAATTGTAGCTGAAACTATGGATAATTATTTGTTGTTCGAACACCTTTTGCAAACCCGTCTTATTCCTCCAGAGAAAGTTCACCCGAAGTTGTGGAAAGGTTGCAACGTTCGAGCCAAACCCTTGAACTGGGTTCAAATTGAGCGCAAGAGGCATGATAAGGAAAGAACATCGGAAGAGCACAAAAAGCTGGTGGAGAAAATTAAGAAGAGAGATCTGAAGCGTCAAAAGAGAATTGAGGCTGCTGGTATTGAGTACGAGTGCCCAGACATTGTAAGATTCTACCGTCTGTTGTGTGTTATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

213

Amino Acids

24.45

Weight (kDa)

9.96

Isoelectric Point (pI)

40.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 59 - 126 5.8e-13 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 286
AccBSI CCGCTC 1 cut(s) 95
AccI GTMKAC 1 cut(s) 177
AciI CCGC 2 cut(s) 93, 120
AclI AACGTT 1 cut(s) 441
AcuI CTGAAG 1 cut(s) 572
AfaI GTAC 2 cut(s) 267, 590
AfiI CCNNNNNNNGG 2 cut(s) 116, 462
AgsI TTSAA 2 cut(s) 460, 470
AjnI CCWGG 2 cut(s) 167, 322
AluBI AGCT 5 cut(s) 37, 47, 136, 344, 523
AluI AGCT 5 cut(s) 37, 47, 136, 344, 523
Alw21I GWGCWC 1 cut(s) 516
AoxI GGCC 1 cut(s) 21
ApeKI GCWGC 2 cut(s) 34, 575
AspLEI GCGC 1 cut(s) 480
AspS9I GGNCC 2 cut(s) 122, 319
AsuC2I CCSGG 1 cut(s) 140
AsuHPI GGTGA 1 cut(s) 407
AsuII TTCGAA 1 cut(s) 372
AvaII GGWCC 2 cut(s) 122, 319
AxyI CCTNAGG 1 cut(s) 153
BaeGI GKGCMC 1 cut(s) 599
Bbv12I GWGCWC 1 cut(s) 516
BbvI GCAGC 2 cut(s) 46, 562
BciT130I CCWGG 2 cut(s) 169, 324
BciVI GTATCC 1 cut(s) 183
BcnI CCSGG 1 cut(s) 140
BfaI CTAG 2 cut(s) 78, 637
BfuI GTATCC 1 cut(s) 183
BglII AGATCT 1 cut(s) 547
BisI GCNGC 3 cut(s) 35, 93, 576
BlpI GCTNAGC 1 cut(s) 38
BlsI GCNGC 3 cut(s) 36, 94, 577
Bme1390I CCNGG 3 cut(s) 140, 169, 324
Bme18I GGWCC 2 cut(s) 122, 319
BmgT120I GGNCC 2 cut(s) 122, 319
BmiI GGNNCC 1 cut(s) 321
BmrFI CCNGG 3 cut(s) 140, 169, 324
BmrI ACTGGG 1 cut(s) 472
BmuI ACTGGG 1 cut(s) 472
BpmI CTGGAG 1 cut(s) 387
Bpu1102I GCTNAGC 1 cut(s) 38
Bpu14I TTCGAA 1 cut(s) 372
BpuMI CCSGG 1 cut(s) 140
BsaAI YACGTR 1 cut(s) 131
BsaJI CCNNGG 3 cut(s) 168, 322, 323
BsaXI ACNNNNNCTCC 4 cut(s) 79, 109, 120, 150
Bsc4I CCNNNNNNNGG 2 cut(s) 116, 462
Bse1I ACTGG 2 cut(s) 71, 467
Bse21I CCTNAGG 1 cut(s) 153
BseBI CCWGG 2 cut(s) 169, 324
BseDI CCNNGG 3 cut(s) 168, 322, 323
BseLI CCNNNNNNNGG 2 cut(s) 116, 462
BseMII CTCAG 1 cut(s) 29
BseNI ACTGG 2 cut(s) 71, 467
BseSI GKGCMC 1 cut(s) 599
BseXI GCAGC 2 cut(s) 46, 562
BsgI GTGCAG 1 cut(s) 111
BshFI GGCC 1 cut(s) 23
BsiHKAI GWGCWC 1 cut(s) 516
BsiSI CCGG 1 cut(s) 140
BslI CCNNNNNNNGG 2 cut(s) 116, 462
BsnI GGCC 1 cut(s) 23
Bsp119I TTCGAA 1 cut(s) 372
Bsp1286I GDGCHC 2 cut(s) 516, 599
Bsp143I GATC 1 cut(s) 547
Bsp1720I GCTNAGC 1 cut(s) 38
BspACI CCGC 2 cut(s) 93, 120
BspANI GGCC 1 cut(s) 23
BspCNI CTCAG 1 cut(s) 30
BspLI GGNNCC 1 cut(s) 321
BspQI GCTCTTC 1 cut(s) 504
BspT104I TTCGAA 1 cut(s) 372
BsrBI CCGCTC 1 cut(s) 95
BsrI ACTGG 2 cut(s) 71, 467
BssECI CCNNGG 3 cut(s) 168, 322, 323
BssMI GATC 1 cut(s) 547
BssNAI GTATAC 1 cut(s) 178
Bst1107I GTATAC 1 cut(s) 178
Bst2UI CCWGG 2 cut(s) 169, 324
Bst4CI ACNGT 1 cut(s) 620
Bst6I CTCTTC 3 cut(s) 138, 504, 536
BstBAI YACGTR 1 cut(s) 131
BstBI TTCGAA 1 cut(s) 372
BstDEI CTNAG 2 cut(s) 38, 153
BstHHI GCGC 1 cut(s) 480
BstKTI GATC 1 cut(s) 550
BstMBI GATC 1 cut(s) 547
BstMWI GCNNNNNNNGC 6 cut(s) 20, 53, 83, 92, 484, 520
BstNI CCWGG 2 cut(s) 169, 324
BstSCI CCNGG 3 cut(s) 138, 167, 322
BstSLI GKGCMC 1 cut(s) 599
BstV1I GCAGC 2 cut(s) 46, 562
BstX2I RGATCY 1 cut(s) 547
BstYI RGATCY 1 cut(s) 547
BstZ17I GTATAC 1 cut(s) 178
Bsu36I CCTNAGG 1 cut(s) 153
BsuI GTATCC 1 cut(s) 183
BsuRI GGCC 1 cut(s) 23
CfoI GCGC 1 cut(s) 480
Cfr13I GGNCC 2 cut(s) 122, 319
CseI GACGC 1 cut(s) 545
Csp6I GTAC 2 cut(s) 266, 589
CviAII CATG 3 cut(s) 25, 197, 488
CviQI GTAC 2 cut(s) 266, 589
DdeI CTNAG 2 cut(s) 38, 153
DpnI GATC 1 cut(s) 549
DpnII GATC 1 cut(s) 547
DrdI GACNNNNNNGTC 1 cut(s) 286
DseDI GACNNNNNNGTC 1 cut(s) 286
Eam1104I CTCTTC 3 cut(s) 138, 504, 536
EarI CTCTTC 3 cut(s) 138, 504, 536
Eco47I GGWCC 2 cut(s) 122, 319
Eco57I CTGAAG 1 cut(s) 572
Eco81I CCTNAGG 1 cut(s) 153
EcoO109I RGGNCCY 1 cut(s) 319
EcoRII CCWGG 2 cut(s) 167, 322
FaeI CATG 3 cut(s) 28, 200, 491
FaiI YATR 6 cut(s) 26, 178, 198, 207, 353, 489
FatI CATG 3 cut(s) 24, 196, 487
FblI GTMKAC 1 cut(s) 177
Fnu4HI GCNGC 3 cut(s) 35, 93, 576
Fsp4HI GCNGC 3 cut(s) 35, 93, 576
FspBI CTAG 2 cut(s) 78, 637
GlaI GCGC 1 cut(s) 479
GluI GCNGC 3 cut(s) 35, 93, 576
GsuI CTGGAG 1 cut(s) 387
HaeIII GGCC 1 cut(s) 23
HapII CCGG 1 cut(s) 140
HgaI GACGC 1 cut(s) 545
HhaI GCGC 1 cut(s) 480
Hin1II CATG 3 cut(s) 28, 200, 491
Hin6I GCGC 1 cut(s) 478
HinP1I GCGC 1 cut(s) 478
HinfI GANTC 1 cut(s) 612
HpaII CCGG 1 cut(s) 140
HphI GGTGA 1 cut(s) 407
Hpy166II GTNNAC 2 cut(s) 178, 415
Hpy188I TCNGA 3 cut(s) 189, 508, 552
Hpy188III TCNNGA 2 cut(s) 98, 404
Hpy8I GTNNAC 2 cut(s) 178, 415
HpyAV CCTTC 2 cut(s) 4, 110
HpyCH4III ACNGT 1 cut(s) 620
HpyCH4IV ACGT 2 cut(s) 130, 441
HpyCH4V TGCA 4 cut(s) 128, 220, 385, 438
HpyF10VI GCNNNNNNNGC 6 cut(s) 20, 53, 83, 92, 484, 520
HpyF3I CTNAG 2 cut(s) 38, 153
HpySE526I ACGT 2 cut(s) 130, 441
Hsp92II CATG 3 cut(s) 28, 200, 491
HspAI GCGC 1 cut(s) 478
Kzo9I GATC 1 cut(s) 547
LguI GCTCTTC 1 cut(s) 504
LmnI GCTCC 2 cut(s) 100, 141
Lsp1109I GCAGC 2 cut(s) 46, 562
MaeI CTAG 2 cut(s) 78, 637
MaeII ACGT 2 cut(s) 130, 441
MalI GATC 1 cut(s) 549
MbiI CCGCTC 1 cut(s) 95
MboI GATC 1 cut(s) 547
MboII GAAGA 4 cut(s) 155, 170, 521, 553
MflI RGATCY 1 cut(s) 547
MhlI GDGCHC 2 cut(s) 516, 599
MluCI AATT 7 cut(s) 246, 261, 336, 358, 471, 534, 567
MmeI TCCRAC 1 cut(s) 167
MnlI CCTC 4 cut(s) 310, 411, 477, 565
MseI TTAA 3 cut(s) 249, 257, 537
MspA1I CMGCKG 1 cut(s) 37
MspI CCGG 1 cut(s) 140
MspR9I CCNGG 3 cut(s) 140, 169, 324
MvaI CCWGG 2 cut(s) 169, 324
MwoI GCNNNNNNNGC 6 cut(s) 20, 53, 83, 92, 484, 520
NciI CCSGG 1 cut(s) 140
NdeII GATC 1 cut(s) 547
NlaIII CATG 3 cut(s) 28, 200, 491
NlaIV GGNNCC 1 cut(s) 321
NspV TTCGAA 1 cut(s) 372
PasI CCCWGGG 1 cut(s) 323
PciSI GCTCTTC 1 cut(s) 504
PfeI GAWTC 1 cut(s) 612
PfoI TCCNGGA 1 cut(s) 138
PkrI GCNGC 3 cut(s) 36, 94, 577
Ppu21I YACGTR 1 cut(s) 131
PpuMI RGGWCCY 1 cut(s) 319
Psp1406I AACGTT 1 cut(s) 441
Psp5II RGGWCCY 1 cut(s) 319
Psp6I CCWGG 2 cut(s) 167, 322
PspGI CCWGG 2 cut(s) 167, 322
PspN4I GGNNCC 1 cut(s) 321
PspPI GGNCC 2 cut(s) 122, 319
PspPPI RGGWCCY 1 cut(s) 319
PsuI RGATCY 1 cut(s) 547
PvuII CAGCTG 1 cut(s) 37
RsaI GTAC 2 cut(s) 267, 590
RsaNI GTAC 2 cut(s) 266, 589
SapI GCTCTTC 1 cut(s) 504
SaqAI TTAA 3 cut(s) 249, 257, 537
SatI GCNGC 3 cut(s) 35, 93, 576
Sau3AI GATC 1 cut(s) 547
Sau96I GGNCC 2 cut(s) 122, 319
ScrFI CCNGG 3 cut(s) 140, 169, 324
SduI GDGCHC 2 cut(s) 516, 599
SfuI TTCGAA 1 cut(s) 372
SinI GGWCC 2 cut(s) 122, 319
Sse9I AATT 7 cut(s) 246, 261, 336, 358, 471, 534, 567
SsiI CCGC 2 cut(s) 93, 120
SspMI CTAG 2 cut(s) 78, 637
StyD4I CCNGG 3 cut(s) 138, 167, 322
TaaI ACNGT 1 cut(s) 620
TaiI ACGT 2 cut(s) 133, 444
TaqI TCGA 3 cut(s) 309, 372, 445
TasI AATT 7 cut(s) 246, 261, 336, 358, 471, 534, 567
TauI GCSGC 1 cut(s) 95
TfiI GAWTC 1 cut(s) 612
Tru1I TTAA 3 cut(s) 249, 257, 537
Tru9I TTAA 3 cut(s) 249, 257, 537
TseI GCWGC 2 cut(s) 34, 575
TspDTI ATGAA 3 cut(s) 41, 222, 295
VpaK11BI GGWCC 2 cut(s) 122, 319
XmiI GTMKAC 1 cut(s) 177
XspI CTAG 2 cut(s) 78, 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.