Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018241.1

Orthogroup ID

OG0008685

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1202

Gene Structure 1202 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018241.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

atgcccaatacatcagaaggtataacagaaaacctaaaacacaaaacgcgcctcttcctcttcctcttccaaaaatcccagctctctgtactctcttttcttcagagcaagatgggggcgaaggcgaaaaaggccatgaaaaagcagctgagcaaagctgtttctgcttctgcttctgctcaaaaaccagttgctagttccgctactgctgctcctgattttttgccattagaaggcggtcctgcgcgtaagctcccggaagagaagcctaaggaagatgttgccagggttgtattcatcagtcggataccgcacggcttctatgaaaaagaaatgcaaggaaagccattagaaggcggtcctgcgcgtaagctcccggaagagaagcctaaggaagatgttgccagggttgtattcatcagtcggataccgcacggcttctatgaaaaagaaatgcaaggtttctttgggcagtttggtgtaatcaagagattaagaattgtacgcaacagaaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

172

Amino Acids

19.25

Weight (kDa)

10.21

Isoelectric Point (pI)

42.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04600
fragaria_vesca	FvH4_5g27351
malus_domestica	MD08G1243300.v1.1 MD15G1437100.v1.1
prunus_persica	Prupe.1G580700_v2.0.a1 Prupe.1G580700_v2.0.a1 Prupe.1G580700_v2.0.a1 Prupe.1G580700_v2.0.a1
pyrus_communis	pycom08g21100 pycom15g38550
rosa_chinensis	RchiOBHm_Chr4g0433501
rosa_laevigata	RLG00000006750
rosa_multiflora	Rmu_sc0000312.1_g000003 Rmu_sc0000759.1_g000001 Rmu_sc0018241.1_g000001
rosa_roxburghii	Rroxscaffold_5G00375020
rosa_rugosa	Rorug04G0269100
rosa_samantha	Rh4AG323700 Rh4BG331700 Rh4CG347000 Rh4DG328200
rosa_wichuraiana	Rw0G020110 Rw4G028050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	49, 247, 367
AciI	CCGC	5 cut(s)	201, 237, 311, 357, 431
AcuI	CTGAAG	1 cut(s)	86
AfaI	GTAC	2 cut(s)	90, 504
AfiI	CCNNNNNNNGG	2 cut(s)	233, 353
AjnI	CCWGG	2 cut(s)	284, 404
AluBI	AGCT	5 cut(s)	82, 148, 158, 253, 373
AluI	AGCT	5 cut(s)	82, 148, 158, 253, 373
AoxI	GGCC	1 cut(s)	132
ApeKI	GCWGC	2 cut(s)	145, 209
AspLEI	GCGC	3 cut(s)	51, 247, 367
AspS9I	GGNCC	2 cut(s)	239, 359
AsuC2I	CCSGG	2 cut(s)	257, 377
AvaII	GGWCC	2 cut(s)	239, 359
AxyI	CCTNAGG	2 cut(s)	270, 390
BbvI	GCAGC	2 cut(s)	157, 196
BccI	CCATC	1 cut(s)	106
BceAI	ACGGC	2 cut(s)	331, 451
BciT130I	CCWGG	2 cut(s)	286, 406
BciVI	GTATCC	2 cut(s)	300, 420
BcnI	CCSGG	2 cut(s)	257, 377
BfaI	CTAG	1 cut(s)	195
BfuI	GTATCC	2 cut(s)	300, 420
BisI	GCNGC	2 cut(s)	146, 210
BlpI	GCTNAGC	1 cut(s)	149
BlsI	GCNGC	2 cut(s)	147, 211
Bme1390I	CCNGG	4 cut(s)	257, 286, 377, 406
Bme18I	GGWCC	2 cut(s)	239, 359
BmgT120I	GGNCC	2 cut(s)	239, 359
BmrFI	CCNGG	4 cut(s)	257, 286, 377, 406
Bpu1102I	GCTNAGC	1 cut(s)	149
BpuMI	CCSGG	2 cut(s)	257, 377
BsaJI	CCNNGG	2 cut(s)	285, 405
BsaXI	ACNNNNNCTCC	2 cut(s)	196, 226
Bsc4I	CCNNNNNNNGG	2 cut(s)	233, 353
Bse1I	ACTGG	1 cut(s)	188
Bse21I	CCTNAGG	2 cut(s)	270, 390
BseBI	CCWGG	2 cut(s)	286, 406
BseDI	CCNNGG	2 cut(s)	285, 405
BseLI	CCNNNNNNNGG	2 cut(s)	233, 353
BseMII	CTCAG	1 cut(s)	140
BseNI	ACTGG	1 cut(s)	188
BseXI	GCAGC	2 cut(s)	157, 196
BseYI	CCCAGC	1 cut(s)	78
Bsh1236I	CGCG	3 cut(s)	49, 247, 367
BshFI	GGCC	1 cut(s)	134
BsiSI	CCGG	2 cut(s)	257, 377
BslI	CCNNNNNNNGG	2 cut(s)	233, 353
BsnI	GGCC	1 cut(s)	134
Bsp1720I	GCTNAGC	1 cut(s)	149
BspACI	CCGC	5 cut(s)	201, 237, 311, 357, 431
BspANI	GGCC	1 cut(s)	134
BspCNI	CTCAG	1 cut(s)	141
BspFNI	CGCG	3 cut(s)	49, 247, 367
BsrI	ACTGG	1 cut(s)	188
BssECI	CCNNGG	2 cut(s)	285, 405
Bst2UI	CCWGG	2 cut(s)	286, 406
Bst6I	CTCTTC	5 cut(s)	59, 65, 71, 255, 375
BstDEI	CTNAG	3 cut(s)	149, 270, 390
BstFNI	CGCG	3 cut(s)	49, 247, 367
BstHHI	GCGC	3 cut(s)	51, 247, 367
BstMWI	GCNNNNNNNGC	5 cut(s)	131, 164, 200, 209, 343
BstNI	CCWGG	2 cut(s)	286, 406
BstSCI	CCNGG	4 cut(s)	255, 284, 375, 404
BstUI	CGCG	3 cut(s)	49, 247, 367
BstV1I	GCAGC	2 cut(s)	157, 196
Bsu36I	CCTNAGG	2 cut(s)	270, 390
BsuI	GTATCC	2 cut(s)	300, 420
BsuRI	GGCC	1 cut(s)	134
CfoI	GCGC	3 cut(s)	51, 247, 367
Cfr13I	GGNCC	2 cut(s)	239, 359
Csp6I	GTAC	2 cut(s)	89, 503
CviAII	CATG	1 cut(s)	136
CviQI	GTAC	2 cut(s)	89, 503
DdeI	CTNAG	3 cut(s)	149, 270, 390
Eam1104I	CTCTTC	5 cut(s)	59, 65, 71, 255, 375
EarI	CTCTTC	5 cut(s)	59, 65, 71, 255, 375
Eco47I	GGWCC	2 cut(s)	239, 359
Eco57I	CTGAAG	1 cut(s)	86
Eco81I	CCTNAGG	2 cut(s)	270, 390
EcoRII	CCWGG	2 cut(s)	284, 404
FaeI	CATG	1 cut(s)	139
FaiI	YATR	4 cut(s)	23, 137, 324, 444
FatI	CATG	1 cut(s)	135
Fnu4HI	GCNGC	2 cut(s)	146, 210
Fsp4HI	GCNGC	2 cut(s)	146, 210
FspBI	CTAG	1 cut(s)	195
GlaI	GCGC	3 cut(s)	50, 246, 366
GluI	GCNGC	2 cut(s)	146, 210
GsaI	CCCAGC	1 cut(s)	82
HaeIII	GGCC	1 cut(s)	134
HapII	CCGG	2 cut(s)	257, 377
HhaI	GCGC	3 cut(s)	51, 247, 367
Hin1II	CATG	1 cut(s)	139
Hin6I	GCGC	3 cut(s)	49, 245, 365
HinP1I	GCGC	3 cut(s)	49, 245, 365
HpaII	CCGG	2 cut(s)	257, 377
Hpy188I	TCNGA	4 cut(s)	16, 105, 306, 426
Hpy188III	TCNNGA	2 cut(s)	215, 487
HpyAV	CCTTC	4 cut(s)	11, 115, 227, 347
HpyCH4V	TGCA	2 cut(s)	337, 457
HpyF10VI	GCNNNNNNNGC	5 cut(s)	131, 164, 200, 209, 343
HpyF3I	CTNAG	3 cut(s)	149, 270, 390
Hsp92II	CATG	1 cut(s)	139
HspAI	GCGC	3 cut(s)	49, 245, 365
LmnI	GCTCC	3 cut(s)	217, 258, 378
Lsp1109I	GCAGC	2 cut(s)	157, 196
MaeI	CTAG	1 cut(s)	195
MboII	GAAGA	8 cut(s)	46, 52, 58, 92, 272, 287, 392, 407
MluCI	AATT	1 cut(s)	498
MmeI	TCCRAC	2 cut(s)	284, 404
MnlI	CCTC	3 cut(s)	62, 68, 74
MseI	TTAA	1 cut(s)	494
MspA1I	CMGCKG	1 cut(s)	148
MspI	CCGG	2 cut(s)	257, 377
MspR9I	CCNGG	4 cut(s)	257, 286, 377, 406
MvaI	CCWGG	2 cut(s)	286, 406
MvnI	CGCG	3 cut(s)	49, 247, 367
MwoI	GCNNNNNNNGC	5 cut(s)	131, 164, 200, 209, 343
NciI	CCSGG	2 cut(s)	257, 377
NlaIII	CATG	1 cut(s)	139
PfoI	TCCNGGA	2 cut(s)	255, 375
PkrI	GCNGC	2 cut(s)	147, 211
Psp6I	CCWGG	2 cut(s)	284, 404
PspFI	CCCAGC	1 cut(s)	78
PspGI	CCWGG	2 cut(s)	284, 404
PspPI	GGNCC	2 cut(s)	239, 359
PvuII	CAGCTG	1 cut(s)	148
RsaI	GTAC	2 cut(s)	90, 504
RsaNI	GTAC	2 cut(s)	89, 503
SaqAI	TTAA	1 cut(s)	494
SatI	GCNGC	2 cut(s)	146, 210
Sau96I	GGNCC	2 cut(s)	239, 359
ScrFI	CCNGG	4 cut(s)	257, 286, 377, 406
SetI	ASST	8 cut(s)	22, 36, 84, 150, 160, 255, 375, 463
SinI	GGWCC	2 cut(s)	239, 359
Sse9I	AATT	1 cut(s)	498
SsiI	CCGC	5 cut(s)	201, 237, 311, 357, 431
SspMI	CTAG	1 cut(s)	195
StyD4I	CCNGG	4 cut(s)	255, 284, 375, 404
TasI	AATT	1 cut(s)	498
TatI	WGTACW	1 cut(s)	88
Tru1I	TTAA	1 cut(s)	494
Tru9I	TTAA	1 cut(s)	494
TseI	GCWGC	2 cut(s)	145, 209
TspDTI	ATGAA	5 cut(s)	152, 286, 339, 406, 459
VpaK11BI	GGWCC	2 cut(s)	239, 359
XspI	CTAG	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.