Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000312.1

Orthogroup ID

OG0008685

Physical Location & Seq

Genomic Coordinates Forward (+)

10298 .. 12629

Gene Structure 2332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000312.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

atgcccaatacatcagaaggtataacagaaaacctaaaacacaaaacgcgcctcttcctcttcctcttccaaaaatcccagctctctgtactctcttttcttcagagcaagatgggggcgaaggcgaaaaaggccatgaaaaagcagctgagcaaagctgtttctgcttctgcttctgctcaaaaaccagttgctagttccgctactgctgctcctgattttttgccattagaaggcggtcctgcgcgtaagctcccggaagagaagcctaaggaagatgttgccagggttgtattcatcagtcggataccgcacggcttctatgaaaaagaaatgcaaggtttctttgggcagtttggtgtaatcaagagattaagaattgtacgcaacagaaagacaggaaagtccaagcattttggcttcatcgagtttgaggaccctggggttgcgaaaattgtagctgaaactatggataattatttgttgttcgaacaccttttgcaaacccgtcttattccaccagagaaagttcacccgaagttgtggaaaggttgcaacgttcgagccaaacccttgaactgggttcaaattgagcgcaagaggcatgataaggaaagaacattggaagagcacaaaaagctggtggagaaaattaagaagagagatctgaagcgtcaaatgagaatagaggctgctggcattgagtacgagtgcccagacattgtcactaatgatcagcctgctccaaagaagaagaagttgcgcctaaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

257

Amino Acids

29.49

Weight (kDa)

10.08

Isoelectric Point (pI)

42.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04600
fragaria_vesca	FvH4_5g27351
malus_domestica	MD08G1243300.v1.1 MD15G1437100.v1.1
prunus_persica	Prupe.1G580700_v2.0.a1 Prupe.1G580700_v2.0.a1 Prupe.1G580700_v2.0.a1 Prupe.1G580700_v2.0.a1
pyrus_communis	pycom08g21100 pycom15g38550
rosa_chinensis	RchiOBHm_Chr4g0433501
rosa_laevigata	RLG00000006750
rosa_multiflora	Rmu_sc0000312.1_g000003 Rmu_sc0000759.1_g000001 Rmu_sc0018241.1_g000001
rosa_roxburghii	Rroxscaffold_5G00375020
rosa_rugosa	Rorug04G0269100
rosa_samantha	Rh4AG323700 Rh4BG331700 Rh4CG347000 Rh4DG328200
rosa_wichuraiana	Rw0G020110 Rw4G028050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	403
AccII	CGCG	2 cut(s)	49, 247
AciI	CCGC	3 cut(s)	201, 237, 311
AclI	AACGTT	1 cut(s)	558
AcuI	CTGAAG	2 cut(s)	86, 689
AfaI	GTAC	3 cut(s)	90, 384, 707
AfiI	CCNNNNNNNGG	2 cut(s)	233, 579
AgsI	TTSAA	2 cut(s)	577, 587
AjnI	CCWGG	2 cut(s)	284, 439
AluBI	AGCT	6 cut(s)	82, 148, 158, 253, 461, 640
AluI	AGCT	6 cut(s)	82, 148, 158, 253, 461, 640
Alw21I	GWGCWC	1 cut(s)	633
AoxI	GGCC	1 cut(s)	132
ApeKI	GCWGC	3 cut(s)	145, 209, 692
AspLEI	GCGC	4 cut(s)	51, 247, 597, 765
AspS9I	GGNCC	2 cut(s)	239, 436
AsuC2I	CCSGG	1 cut(s)	257
AsuHPI	GGTGA	1 cut(s)	524
AsuII	TTCGAA	1 cut(s)	489
AvaII	GGWCC	2 cut(s)	239, 436
AxyI	CCTNAGG	1 cut(s)	270
BaeGI	GKGCMC	1 cut(s)	716
Bbv12I	GWGCWC	1 cut(s)	633
BbvI	GCAGC	3 cut(s)	157, 196, 679
BccI	CCATC	1 cut(s)	106
BceAI	ACGGC	1 cut(s)	331
BciT130I	CCWGG	2 cut(s)	286, 441
BciVI	GTATCC	1 cut(s)	300
BclI	TGATCA	1 cut(s)	733
BcnI	CCSGG	1 cut(s)	257
BfaI	CTAG	1 cut(s)	195
BfuI	GTATCC	1 cut(s)	300
BglII	AGATCT	1 cut(s)	664
BisI	GCNGC	3 cut(s)	146, 210, 693
BlpI	GCTNAGC	1 cut(s)	149
BlsI	GCNGC	3 cut(s)	147, 211, 694
Bme1390I	CCNGG	3 cut(s)	257, 286, 441
Bme18I	GGWCC	2 cut(s)	239, 436
BmgT120I	GGNCC	2 cut(s)	239, 436
BmiI	GGNNCC	1 cut(s)	438
BmrFI	CCNGG	3 cut(s)	257, 286, 441
BmrI	ACTGGG	1 cut(s)	589
BmuI	ACTGGG	1 cut(s)	589
Bpu1102I	GCTNAGC	1 cut(s)	149
Bpu14I	TTCGAA	1 cut(s)	489
BpuMI	CCSGG	1 cut(s)	257
BsaJI	CCNNGG	3 cut(s)	285, 439, 440
BsaXI	ACNNNNNCTCC	2 cut(s)	196, 226
Bsc4I	CCNNNNNNNGG	2 cut(s)	233, 579
Bse1I	ACTGG	2 cut(s)	188, 584
Bse21I	CCTNAGG	1 cut(s)	270
BseBI	CCWGG	2 cut(s)	286, 441
BseDI	CCNNGG	3 cut(s)	285, 439, 440
BseLI	CCNNNNNNNGG	2 cut(s)	233, 579
BseMII	CTCAG	1 cut(s)	140
BseNI	ACTGG	2 cut(s)	188, 584
BseSI	GKGCMC	1 cut(s)	716
BseXI	GCAGC	3 cut(s)	157, 196, 679
BseYI	CCCAGC	1 cut(s)	78
Bsh1236I	CGCG	2 cut(s)	49, 247
BshFI	GGCC	1 cut(s)	134
BsiHKAI	GWGCWC	1 cut(s)	633
BsiSI	CCGG	1 cut(s)	257
BslI	CCNNNNNNNGG	2 cut(s)	233, 579
BsnI	GGCC	1 cut(s)	134
Bsp119I	TTCGAA	1 cut(s)	489
Bsp1286I	GDGCHC	2 cut(s)	633, 716
Bsp143I	GATC	2 cut(s)	664, 733
Bsp1720I	GCTNAGC	1 cut(s)	149
BspACI	CCGC	3 cut(s)	201, 237, 311
BspANI	GGCC	1 cut(s)	134
BspCNI	CTCAG	1 cut(s)	141
BspFNI	CGCG	2 cut(s)	49, 247
BspLI	GGNNCC	1 cut(s)	438
BspQI	GCTCTTC	1 cut(s)	621
BspT104I	TTCGAA	1 cut(s)	489
BsrI	ACTGG	2 cut(s)	188, 584
BssECI	CCNNGG	3 cut(s)	285, 439, 440
BssMI	GATC	2 cut(s)	664, 733
Bst2UI	CCWGG	2 cut(s)	286, 441
Bst6I	CTCTTC	6 cut(s)	59, 65, 71, 255, 621, 653
BstBI	TTCGAA	1 cut(s)	489
BstC8I	GCNNGC	2 cut(s)	697, 741
BstDEI	CTNAG	2 cut(s)	149, 270
BstFNI	CGCG	2 cut(s)	49, 247
BstHHI	GCGC	4 cut(s)	51, 247, 597, 765
BstKTI	GATC	2 cut(s)	667, 736
BstMBI	GATC	2 cut(s)	664, 733
BstMWI	GCNNNNNNNGC	6 cut(s)	131, 164, 200, 209, 601, 637
BstNI	CCWGG	2 cut(s)	286, 441
BstSCI	CCNGG	3 cut(s)	255, 284, 439
BstSLI	GKGCMC	1 cut(s)	716
BstUI	CGCG	2 cut(s)	49, 247
BstV1I	GCAGC	3 cut(s)	157, 196, 679
BstX2I	RGATCY	1 cut(s)	664
BstYI	RGATCY	1 cut(s)	664
Bsu36I	CCTNAGG	1 cut(s)	270
BsuI	GTATCC	1 cut(s)	300
BsuRI	GGCC	1 cut(s)	134
Cac8I	GCNNGC	2 cut(s)	697, 741
CfoI	GCGC	4 cut(s)	51, 247, 597, 765
Cfr13I	GGNCC	2 cut(s)	239, 436
CseI	GACGC	1 cut(s)	662
Csp6I	GTAC	3 cut(s)	89, 383, 706
CviAII	CATG	2 cut(s)	136, 605
CviQI	GTAC	3 cut(s)	89, 383, 706
DdeI	CTNAG	2 cut(s)	149, 270
DpnI	GATC	2 cut(s)	666, 735
DpnII	GATC	2 cut(s)	664, 733
DrdI	GACNNNNNNGTC	1 cut(s)	403
DseDI	GACNNNNNNGTC	1 cut(s)	403
Eam1104I	CTCTTC	6 cut(s)	59, 65, 71, 255, 621, 653
EarI	CTCTTC	6 cut(s)	59, 65, 71, 255, 621, 653
Eco47I	GGWCC	2 cut(s)	239, 436
Eco57I	CTGAAG	2 cut(s)	86, 689
Eco81I	CCTNAGG	1 cut(s)	270
EcoO109I	RGGNCCY	1 cut(s)	436
EcoRII	CCWGG	2 cut(s)	284, 439
FaeI	CATG	2 cut(s)	139, 608
FaiI	YATR	5 cut(s)	23, 137, 324, 470, 606
FatI	CATG	2 cut(s)	135, 604
FbaI	TGATCA	1 cut(s)	733
Fnu4HI	GCNGC	3 cut(s)	146, 210, 693
Fsp4HI	GCNGC	3 cut(s)	146, 210, 693
FspBI	CTAG	1 cut(s)	195
GlaI	GCGC	4 cut(s)	50, 246, 596, 764
GluI	GCNGC	3 cut(s)	146, 210, 693
GsaI	CCCAGC	1 cut(s)	82
HaeIII	GGCC	1 cut(s)	134
HapII	CCGG	1 cut(s)	257
HgaI	GACGC	1 cut(s)	662
HhaI	GCGC	4 cut(s)	51, 247, 597, 765
Hin1II	CATG	2 cut(s)	139, 608
Hin6I	GCGC	4 cut(s)	49, 245, 595, 763
HinP1I	GCGC	4 cut(s)	49, 245, 595, 763
HpaII	CCGG	1 cut(s)	257
HphI	GGTGA	1 cut(s)	524
Hpy166II	GTNNAC	1 cut(s)	532
Hpy188I	TCNGA	4 cut(s)	16, 105, 306, 669
Hpy188III	TCNNGA	2 cut(s)	215, 367
Hpy8I	GTNNAC	1 cut(s)	532
HpyAV	CCTTC	3 cut(s)	11, 115, 227
HpyCH4IV	ACGT	1 cut(s)	558
HpyCH4V	TGCA	3 cut(s)	337, 502, 555
HpyF10VI	GCNNNNNNNGC	6 cut(s)	131, 164, 200, 209, 601, 637
HpyF3I	CTNAG	2 cut(s)	149, 270
HpySE526I	ACGT	1 cut(s)	558
Hsp92II	CATG	2 cut(s)	139, 608
HspAI	GCGC	4 cut(s)	49, 245, 595, 763
Ksp22I	TGATCA	1 cut(s)	733
Kzo9I	GATC	2 cut(s)	664, 733
LguI	GCTCTTC	1 cut(s)	621
LmnI	GCTCC	3 cut(s)	217, 258, 748
Lsp1109I	GCAGC	3 cut(s)	157, 196, 679
MaeI	CTAG	1 cut(s)	195
MaeII	ACGT	1 cut(s)	558
MaeIII	GTNAC	1 cut(s)	724
MalI	GATC	2 cut(s)	666, 735
MboI	GATC	2 cut(s)	664, 733
MflI	RGATCY	1 cut(s)	664
MhlI	GDGCHC	2 cut(s)	633, 716
MluCI	AATT	5 cut(s)	378, 453, 475, 588, 651
MmeI	TCCRAC	1 cut(s)	284
MnlI	CCTC	6 cut(s)	62, 68, 74, 427, 594, 682
MseI	TTAA	2 cut(s)	374, 654
MspA1I	CMGCKG	1 cut(s)	148
MspI	CCGG	1 cut(s)	257
MspR9I	CCNGG	3 cut(s)	257, 286, 441
MvaI	CCWGG	2 cut(s)	286, 441
MvnI	CGCG	2 cut(s)	49, 247
MwoI	GCNNNNNNNGC	6 cut(s)	131, 164, 200, 209, 601, 637
NciI	CCSGG	1 cut(s)	257
NdeII	GATC	2 cut(s)	664, 733
NlaIII	CATG	2 cut(s)	139, 608
NlaIV	GGNNCC	1 cut(s)	438
NmuCI	GTSAC	1 cut(s)	724
NspV	TTCGAA	1 cut(s)	489
PasI	CCCWGGG	1 cut(s)	440
PciSI	GCTCTTC	1 cut(s)	621
PflFI	GACNNNGTC	1 cut(s)	722
PfoI	TCCNGGA	1 cut(s)	255
PkrI	GCNGC	3 cut(s)	147, 211, 694
PpuMI	RGGWCCY	1 cut(s)	436
Psp1406I	AACGTT	1 cut(s)	558
Psp5II	RGGWCCY	1 cut(s)	436
Psp6I	CCWGG	2 cut(s)	284, 439
PspFI	CCCAGC	1 cut(s)	78
PspGI	CCWGG	2 cut(s)	284, 439
PspN4I	GGNNCC	1 cut(s)	438
PspPI	GGNCC	2 cut(s)	239, 436
PspPPI	RGGWCCY	1 cut(s)	436
PsuI	RGATCY	1 cut(s)	664
PsyI	GACNNNGTC	1 cut(s)	722
PvuII	CAGCTG	1 cut(s)	148
RsaI	GTAC	3 cut(s)	90, 384, 707
RsaNI	GTAC	3 cut(s)	89, 383, 706
SapI	GCTCTTC	1 cut(s)	621
SaqAI	TTAA	2 cut(s)	374, 654
SatI	GCNGC	3 cut(s)	146, 210, 693
Sau3AI	GATC	2 cut(s)	664, 733
Sau96I	GGNCC	2 cut(s)	239, 436
ScrFI	CCNGG	3 cut(s)	257, 286, 441
SduI	GDGCHC	2 cut(s)	633, 716
SfuI	TTCGAA	1 cut(s)	489
SinI	GGWCC	2 cut(s)	239, 436
Sse9I	AATT	5 cut(s)	378, 453, 475, 588, 651
SsiI	CCGC	3 cut(s)	201, 237, 311
SspMI	CTAG	1 cut(s)	195
StyD4I	CCNGG	3 cut(s)	255, 284, 439
TaiI	ACGT	1 cut(s)	561
TaqI	TCGA	3 cut(s)	426, 489, 562
TasI	AATT	5 cut(s)	378, 453, 475, 588, 651
TatI	WGTACW	1 cut(s)	88
Tru1I	TTAA	2 cut(s)	374, 654
Tru9I	TTAA	2 cut(s)	374, 654
TseFI	GTSAC	1 cut(s)	724
TseI	GCWGC	3 cut(s)	145, 209, 692
Tsp45I	GTSAC	1 cut(s)	724
TspDTI	ATGAA	4 cut(s)	152, 286, 339, 412
Tth111I	GACNNNGTC	1 cut(s)	722
VpaK11BI	GGWCC	2 cut(s)	239, 436
XspI	CTAG	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.