Rmu_sc0000759.1_g000001

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000759.1
OG0008685
Physical Location & Seq
Reverse (-)
1 .. 754
754 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000759.1_g000001.1.cds

Sequence Viewer

Length: 337 bp
atgcccaatacatcggaaggttatgaaggtataacagaaaacctaaaacacgaaacgcgcctcttccaaaaatcccagctctctgtactctcttttcttcagagcaagatgggggcgaaggcgaaaaaggccatgaaaaagcagctgagcaaagctgtttctgcttctgcttctgctcaaaaaccagttgctagttccgctactgctgctcctgactttttgccattagaaggcggtcctgcgcgtaagctcccggaagagaagcctaaggaagatgttgccagggttgtattcatcagtcggataccgcacggcttctatgaaaaagaaatgcaag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

112

Amino Acids

12.26

Weight (kDa)

9.66

Isoelectric Point (pI)

42.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 58, 244
AciI CCGC 3 cut(s) 198, 234, 308
AcuI CTGAAG 1 cut(s) 83
AfaI GTAC 1 cut(s) 87
AfiI CCNNNNNNNGG 1 cut(s) 230
AjnI CCWGG 1 cut(s) 281
AluBI AGCT 4 cut(s) 79, 145, 155, 250
AluI AGCT 4 cut(s) 79, 145, 155, 250
AoxI GGCC 1 cut(s) 129
ApeKI GCWGC 2 cut(s) 142, 206
AspLEI GCGC 2 cut(s) 60, 244
AspS9I GGNCC 1 cut(s) 236
AsuC2I CCSGG 1 cut(s) 254
AvaII GGWCC 1 cut(s) 236
AxyI CCTNAGG 1 cut(s) 267
BbvI GCAGC 2 cut(s) 154, 193
BccI CCATC 1 cut(s) 103
BceAI ACGGC 1 cut(s) 328
BciT130I CCWGG 1 cut(s) 283
BciVI GTATCC 1 cut(s) 297
BcnI CCSGG 1 cut(s) 254
BfaI CTAG 1 cut(s) 192
BfuI GTATCC 1 cut(s) 297
BisI GCNGC 2 cut(s) 143, 207
BlpI GCTNAGC 1 cut(s) 146
BlsI GCNGC 2 cut(s) 144, 208
Bme1390I CCNGG 2 cut(s) 254, 283
Bme18I GGWCC 1 cut(s) 236
BmgT120I GGNCC 1 cut(s) 236
BmrFI CCNGG 2 cut(s) 254, 283
Bpu1102I GCTNAGC 1 cut(s) 146
BpuMI CCSGG 1 cut(s) 254
BsaJI CCNNGG 1 cut(s) 282
BsaXI ACNNNNNCTCC 2 cut(s) 193, 223
Bsc4I CCNNNNNNNGG 1 cut(s) 230
Bse1I ACTGG 1 cut(s) 185
Bse21I CCTNAGG 1 cut(s) 267
BseBI CCWGG 1 cut(s) 283
BseDI CCNNGG 1 cut(s) 282
BseLI CCNNNNNNNGG 1 cut(s) 230
BseMII CTCAG 1 cut(s) 137
BseNI ACTGG 1 cut(s) 185
BseXI GCAGC 2 cut(s) 154, 193
BseYI CCCAGC 1 cut(s) 75
Bsh1236I CGCG 2 cut(s) 58, 244
BshFI GGCC 1 cut(s) 131
BsiSI CCGG 1 cut(s) 254
BslI CCNNNNNNNGG 1 cut(s) 230
BsnI GGCC 1 cut(s) 131
Bsp1720I GCTNAGC 1 cut(s) 146
BspACI CCGC 3 cut(s) 198, 234, 308
BspANI GGCC 1 cut(s) 131
BspCNI CTCAG 1 cut(s) 138
BspFNI CGCG 2 cut(s) 58, 244
BsrI ACTGG 1 cut(s) 185
BssECI CCNNGG 1 cut(s) 282
Bst2UI CCWGG 1 cut(s) 283
Bst6I CTCTTC 2 cut(s) 68, 252
BstDEI CTNAG 2 cut(s) 146, 267
BstFNI CGCG 2 cut(s) 58, 244
BstHHI GCGC 2 cut(s) 60, 244
BstMWI GCNNNNNNNGC 4 cut(s) 128, 161, 197, 206
BstNI CCWGG 1 cut(s) 283
BstSCI CCNGG 2 cut(s) 252, 281
BstUI CGCG 2 cut(s) 58, 244
BstV1I GCAGC 2 cut(s) 154, 193
Bsu36I CCTNAGG 1 cut(s) 267
BsuI GTATCC 1 cut(s) 297
BsuRI GGCC 1 cut(s) 131
CfoI GCGC 2 cut(s) 60, 244
Cfr13I GGNCC 1 cut(s) 236
Csp6I GTAC 1 cut(s) 86
CviAII CATG 1 cut(s) 133
CviJI RGCY 7 cut(s) 79, 131, 145, 155, 250, 265, 315
CviKI_1 RGCY 7 cut(s) 79, 131, 145, 155, 250, 265, 315
CviQI GTAC 1 cut(s) 86
DdeI CTNAG 2 cut(s) 146, 267
Eam1104I CTCTTC 2 cut(s) 68, 252
EarI CTCTTC 2 cut(s) 68, 252
Eco47I GGWCC 1 cut(s) 236
Eco57I CTGAAG 1 cut(s) 83
Eco81I CCTNAGG 1 cut(s) 267
EcoRII CCWGG 1 cut(s) 281
FaeI CATG 1 cut(s) 136
FaiI YATR 4 cut(s) 24, 32, 134, 321
FatI CATG 1 cut(s) 132
Fnu4HI GCNGC 2 cut(s) 143, 207
Fsp4HI GCNGC 2 cut(s) 143, 207
FspBI CTAG 1 cut(s) 192
GlaI GCGC 2 cut(s) 59, 243
GluI GCNGC 2 cut(s) 143, 207
GsaI CCCAGC 1 cut(s) 79
HaeIII GGCC 1 cut(s) 131
HapII CCGG 1 cut(s) 254
HhaI GCGC 2 cut(s) 60, 244
Hin1II CATG 1 cut(s) 136
Hin6I GCGC 2 cut(s) 58, 242
HinP1I GCGC 2 cut(s) 58, 242
HpaII CCGG 1 cut(s) 254
Hpy188I TCNGA 3 cut(s) 16, 102, 303
Hpy188III TCNNGA 1 cut(s) 212
HpyAV CCTTC 4 cut(s) 11, 20, 112, 224
HpyCH4V TGCA 1 cut(s) 334
HpyF10VI GCNNNNNNNGC 4 cut(s) 128, 161, 197, 206
HpyF3I CTNAG 2 cut(s) 146, 267
Hsp92II CATG 1 cut(s) 136
HspAI GCGC 2 cut(s) 58, 242
LmnI GCTCC 2 cut(s) 214, 255
LpnPI CCDG 7 cut(s) 89, 198, 225, 252, 267, 268, 295
Lsp1109I GCAGC 2 cut(s) 154, 193
MaeI CTAG 1 cut(s) 192
MboII GAAGA 4 cut(s) 55, 89, 269, 284
MmeI TCCRAC 1 cut(s) 281
MnlI CCTC 1 cut(s) 71
MspA1I CMGCKG 1 cut(s) 145
MspI CCGG 1 cut(s) 254
MspR9I CCNGG 2 cut(s) 254, 283
MvaI CCWGG 1 cut(s) 283
MvnI CGCG 2 cut(s) 58, 244
MwoI GCNNNNNNNGC 4 cut(s) 128, 161, 197, 206
NciI CCSGG 1 cut(s) 254
NlaIII CATG 1 cut(s) 136
PfoI TCCNGGA 1 cut(s) 252
PkrI GCNGC 2 cut(s) 144, 208
Psp6I CCWGG 1 cut(s) 281
PspFI CCCAGC 1 cut(s) 75
PspGI CCWGG 1 cut(s) 281
PspPI GGNCC 1 cut(s) 236
PvuII CAGCTG 1 cut(s) 145
RsaI GTAC 1 cut(s) 87
RsaNI GTAC 1 cut(s) 86
SatI GCNGC 2 cut(s) 143, 207
Sau96I GGNCC 1 cut(s) 236
ScrFI CCNGG 2 cut(s) 254, 283
SetI ASST 7 cut(s) 22, 31, 45, 81, 147, 157, 252
SinI GGWCC 1 cut(s) 236
SsiI CCGC 3 cut(s) 198, 234, 308
SspMI CTAG 1 cut(s) 192
StyD4I CCNGG 2 cut(s) 252, 281
TatI WGTACW 1 cut(s) 85
TseI GCWGC 2 cut(s) 142, 206
TspDTI ATGAA 4 cut(s) 39, 149, 283, 336
VpaK11BI GGWCC 1 cut(s) 236
XspI CTAG 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.