FvH4_5g31342

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0008142
Physical Location & Seq
Forward (+)
22246799 .. 22247761
963 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g31342.t1

Sequence Viewer

Length: 693 bp
ATGGGTACTAAAATCATGCATTCCAGCAACCACGTTCACACCCAGATGATGAAGATCAAAGTCCCCAAGTTTGCTTCTCGACAAACTAGGTTTCCCTCTTCTTCTTTGTGCGCTTCTCCTTGTTCAGTCCTACCTGAAAACTCCAAGAAGCGACCACTCTCACCACACGAGCAGCAAGTGGGGAATAAGATAAAGAAGATGAAGGTTGTCGAGTCTCCCCTGTCACCAACTGAACTCCGTGGTGCGATGCTCAGGATCAAGCATGCCGATATTATCTTCAAAGCTCAGAAAGAGCACCTTGAGAAGCTTATATCTGATCCGGTGAAGCTGCAAAAGGCTTTGGCAGAGCTGAAACAAAAGCAGTTGGAAGAAAAAGAAAGAGTTGAGGCGCAACTAAGGATGGCTGATGACGAGGCAAAACGGAAACAAGAGGAGGCTGAAAAGGAAAGACTAGAAAGAATTCAGCGACAAAGGAGGAGCGAAAGGCTTGCTCTAGACAGATTTGAGGCCGTGGCTAAATCTAAGGTACAAAAACCTTACTGCTGCACTCTAATGGAACTTGGGATTATAACTCGATGTGATTCTTCTTGGTCTTGTGGTTGTTGGGGAGGGAATCAACACTCTTTGCCATTGGAGCAGCTAGGTTTCATCAACAAACAAGGAGATGAATTGGAGGAAGGAGAGATCCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain

Protein Analysis

231

Amino Acids

26.4

Weight (kDa)

9.36

Isoelectric Point (pI)

56.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 569
AclWI GGATC 3 cut(s) 263, 311, 679
AcsI RAATTY 1 cut(s) 459
AfaI GTAC 2 cut(s) 7, 528
AgsI TTSAA 1 cut(s) 280
AluBI AGCT 5 cut(s) 284, 307, 328, 349, 640
AluI AGCT 5 cut(s) 284, 307, 328, 349, 640
Alw21I GWGCWC 1 cut(s) 297
Alw26I GTCTC 1 cut(s) 219
AlwI GGATC 3 cut(s) 263, 311, 679
AoxI GGCC 1 cut(s) 507
ApeKI GCWGC 4 cut(s) 172, 328, 543, 637
ApoI RAATTY 1 cut(s) 459
Asp700I GAANNNNTTC 1 cut(s) 459
AspLEI GCGC 2 cut(s) 113, 391
AsuHPI GGTGA 3 cut(s) 153, 216, 334
BauI CACGAG 1 cut(s) 167
Bbv12I GWGCWC 1 cut(s) 297
BbvI GCAGC 4 cut(s) 184, 315, 530, 649
BccI CCATC 1 cut(s) 394
BceAI ACGGC 1 cut(s) 494
BcgI CGANNNNNNTGC 2 cut(s) 470, 504
BcoDI GTCTC 1 cut(s) 219
BfaI CTAG 4 cut(s) 87, 452, 494, 641
BisI GCNGC 4 cut(s) 173, 329, 544, 638
BlsI GCNGC 4 cut(s) 174, 330, 545, 639
BmsI GCATC 1 cut(s) 237
Bpu10I CCTNAGC 1 cut(s) 251
BpuEI CTTGAG 1 cut(s) 320
BsaBI GATNNNNATC 1 cut(s) 53
BsaJI CCNNGG 2 cut(s) 238, 510
BsaWI WCCGGW 1 cut(s) 319
Bse8I GATNNNNATC 1 cut(s) 53
BseDI CCNNGG 2 cut(s) 238, 510
BseGI GGATG 1 cut(s) 405
BseJI GATNNNNATC 1 cut(s) 53
BseMII CTCAG 2 cut(s) 265, 299
BseRI GAGGAG 2 cut(s) 446, 490
BseXI GCAGC 4 cut(s) 184, 315, 530, 649
BsgI GTGCAG 1 cut(s) 529
BshFI GGCC 1 cut(s) 509
BsiHKAI GWGCWC 1 cut(s) 297
BsiSI CCGG 1 cut(s) 320
BslFI GGGAC 1 cut(s) 47
BsmAI GTCTC 1 cut(s) 219
BsmFI GGGAC 1 cut(s) 47
BsmI GAATGC 1 cut(s) 19
BsnI GGCC 1 cut(s) 509
Bsp1286I GDGCHC 1 cut(s) 297
Bsp143I GATC 4 cut(s) 54, 255, 316, 684
BspANI GGCC 1 cut(s) 509
BspCNI CTCAG 2 cut(s) 264, 298
BspPI GGATC 3 cut(s) 263, 311, 679
BssECI CCNNGG 2 cut(s) 238, 510
BssMI GATC 4 cut(s) 54, 255, 316, 684
BssSI CACGAG 1 cut(s) 167
Bst2BI CACGAG 1 cut(s) 167
Bst6I CTCTTC 1 cut(s) 103
BstC8I GCNNGC 2 cut(s) 264, 489
BstDEI CTNAG 4 cut(s) 251, 285, 395, 522
BstDSI CCRYGG 2 cut(s) 238, 510
BstF5I GGATG 1 cut(s) 405
BstHHI GCGC 2 cut(s) 113, 391
BstKTI GATC 4 cut(s) 57, 258, 319, 687
BstMAI GTCTC 1 cut(s) 219
BstMBI GATC 4 cut(s) 54, 255, 316, 684
BstMWI GCNNNNNNNGC 1 cut(s) 634
BstNSI RCATGY 1 cut(s) 266
BstV1I GCAGC 4 cut(s) 184, 315, 530, 649
BstX2I RGATCY 1 cut(s) 684
BstYI RGATCY 1 cut(s) 684
BsuRI GGCC 1 cut(s) 509
BtgI CCRYGG 2 cut(s) 238, 510
BtgZI GCGATG 1 cut(s) 260
BtsCI GGATG 1 cut(s) 405
Cac8I GCNNGC 2 cut(s) 264, 489
CfoI GCGC 2 cut(s) 113, 391
Csp6I GTAC 2 cut(s) 6, 527
CviAII CATG 2 cut(s) 16, 263
CviQI GTAC 2 cut(s) 6, 527
DdeI CTNAG 4 cut(s) 251, 285, 395, 522
DpnI GATC 4 cut(s) 56, 257, 318, 686
DpnII GATC 4 cut(s) 54, 255, 316, 684
Eam1104I CTCTTC 1 cut(s) 103
EarI CTCTTC 1 cut(s) 103
EcoRI GAATTC 1 cut(s) 459
EcoT22I ATGCAT 1 cut(s) 21
FaeI CATG 2 cut(s) 19, 266
FaiI YATR 4 cut(s) 17, 264, 311, 569
FalI AAGNNNNNCTT 2 cut(s) 282, 314
FaqI GGGAC 1 cut(s) 47
FatI CATG 2 cut(s) 15, 262
Fnu4HI GCNGC 4 cut(s) 173, 329, 544, 638
FokI GGATG 1 cut(s) 412
Fsp4HI GCNGC 4 cut(s) 173, 329, 544, 638
FspBI CTAG 4 cut(s) 87, 452, 494, 641
GlaI GCGC 2 cut(s) 112, 390
GluI GCNGC 4 cut(s) 173, 329, 544, 638
HaeIII GGCC 1 cut(s) 509
HapII CCGG 1 cut(s) 320
HhaI GCGC 2 cut(s) 113, 391
Hin1II CATG 2 cut(s) 19, 266
Hin6I GCGC 2 cut(s) 111, 389
HinP1I GCGC 2 cut(s) 111, 389
HindIII AAGCTT 1 cut(s) 305
HinfI GANTC 3 cut(s) 212, 581, 613
HpaII CCGG 1 cut(s) 320
HphI GGTGA 3 cut(s) 153, 216, 334
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 2 cut(s) 288, 316
Hpy188III TCNNGA 3 cut(s) 78, 253, 494
Hpy8I GTNNAC 1 cut(s) 37
HpyAV CCTTC 2 cut(s) 196, 671
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 3 cut(s) 19, 331, 546
HpyF10VI GCNNNNNNNGC 1 cut(s) 634
HpyF3I CTNAG 4 cut(s) 251, 285, 395, 522
HpySE526I ACGT 1 cut(s) 33
Hsp92II CATG 2 cut(s) 19, 266
HspAI GCGC 2 cut(s) 111, 389
Kzo9I GATC 4 cut(s) 54, 255, 316, 684
LmnI GCTCC 2 cut(s) 477, 634
LpnPI CCDG 6 cut(s) 37, 56, 147, 233, 238, 333
Lsp1109I GCAGC 4 cut(s) 184, 315, 530, 649
LweI GCATC 1 cut(s) 237
MaeI CTAG 4 cut(s) 87, 452, 494, 641
MaeII ACGT 1 cut(s) 33
MaeIII GTNAC 1 cut(s) 222
MalI GATC 4 cut(s) 56, 257, 318, 686
MboI GATC 4 cut(s) 54, 255, 316, 684
MboII GAAGA 7 cut(s) 64, 90, 93, 208, 268, 380, 576
MflI RGATCY 1 cut(s) 684
MhlI GDGCHC 1 cut(s) 297
MluCI AATT 2 cut(s) 459, 668
MlyI GAGTC 1 cut(s) 221
MmeI TCCRAC 1 cut(s) 345
MnlI CCTC 9 cut(s) 106, 379, 406, 424, 427, 468, 499, 602, 667
Mph1103I ATGCAT 1 cut(s) 21
MroXI GAANNNNTTC 1 cut(s) 459
MslI CAYNNNNRTG 2 cut(s) 44, 551
MspI CCGG 1 cut(s) 320
Mva1269I GAATGC 1 cut(s) 19
MwoI GCNNNNNNNGC 1 cut(s) 634
NdeII GATC 4 cut(s) 54, 255, 316, 684
NlaIII CATG 2 cut(s) 19, 266
NmuCI GTSAC 1 cut(s) 222
NsiI ATGCAT 1 cut(s) 21
NspI RCATGY 1 cut(s) 266
PaeI GCATGC 1 cut(s) 266
PctI GAATGC 1 cut(s) 19
PdmI GAANNNNTTC 1 cut(s) 459
PfeI GAWTC 2 cut(s) 581, 613
PkrI GCNGC 4 cut(s) 174, 330, 545, 639
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
PsiI TTATAA 1 cut(s) 569
PsuI RGATCY 1 cut(s) 684
RsaI GTAC 2 cut(s) 7, 528
RsaNI GTAC 2 cut(s) 6, 527
RseI CAYNNNNRTG 2 cut(s) 44, 551
SatI GCNGC 4 cut(s) 173, 329, 544, 638
Sau3AI GATC 4 cut(s) 54, 255, 316, 684
SchI GAGTC 1 cut(s) 221
SduI GDGCHC 1 cut(s) 297
SfaNI GCATC 1 cut(s) 237
SmiMI CAYNNNNRTG 2 cut(s) 44, 551
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
SphI GCATGC 1 cut(s) 266
Sse9I AATT 2 cut(s) 459, 668
SspMI CTAG 4 cut(s) 87, 452, 494, 641
TaiI ACGT 1 cut(s) 36
TaqI TCGA 3 cut(s) 79, 210, 574
TasI AATT 2 cut(s) 459, 668
TfiI GAWTC 2 cut(s) 581, 613
TseFI GTSAC 1 cut(s) 222
TseI GCWGC 4 cut(s) 172, 328, 543, 637
Tsp45I GTSAC 1 cut(s) 222
TspDTI ATGAA 4 cut(s) 65, 215, 637, 681
TspGWI ACGGA 3 cut(s) 227, 436, 677
XapI RAATTY 1 cut(s) 459
XbaI TCTAGA 1 cut(s) 493
XceI RCATGY 1 cut(s) 266
XmnI GAANNNNTTC 1 cut(s) 459
XspI CTAG 4 cut(s) 87, 452, 494, 641
Zsp2I ATGCAT 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.