No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g31342 FvH4_6g33791 |
| rosa_chinensis | RchiOBHm_Chr6g0266911 |
| rosa_laevigata | RLG00000001644 RLG00000014058 RLG00000020127 |
| rosa_multiflora | Rmu_sc0001772.1_g000040 Rmu_sc0001772.1_g000076 Rmu_sc0002506.1_g000026 |
| rosa_roxburghii | Rroxscaffold_2G00100850 Rroxscaffold_3G00232130 |
| rosa_samantha | Rh6AG149300 Rh6BG150200 Rh6CG145100 Rh6DG134400 Rh7AG393900 Rh7AG394000 Rh7AG394100 Rh7BG376600 Rh7CG413000 Rh7CG413100 Rh7CG413300 Rh7DG389200 |
| rosa_wichuraiana | Rw7G032760 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 3 cut(s) | 56, 65, 128 |
| AcuI | CTGAAG | 1 cut(s) | 356 |
| AdeI | CACNNNGTG | 1 cut(s) | 176 |
| AgsI | TTSAA | 3 cut(s) | 92, 142, 313 |
| AluBI | AGCT | 1 cut(s) | 370 |
| AluI | AGCT | 1 cut(s) | 370 |
| AoxI | GGCC | 1 cut(s) | 3 |
| ApeKI | GCWGC | 1 cut(s) | 376 |
| ApoI | RAATTY | 3 cut(s) | 56, 65, 128 |
| AspS9I | GGNCC | 1 cut(s) | 275 |
| AsuHPI | GGTGA | 2 cut(s) | 153, 249 |
| AvaII | GGWCC | 1 cut(s) | 275 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BbvI | GCAGC | 1 cut(s) | 388 |
| BfaI | CTAG | 2 cut(s) | 24, 84 |
| BisI | GCNGC | 1 cut(s) | 377 |
| BlsI | GCNGC | 1 cut(s) | 378 |
| Bme18I | GGWCC | 1 cut(s) | 275 |
| BmgT120I | GGNCC | 1 cut(s) | 275 |
| BsaJI | CCNNGG | 1 cut(s) | 271 |
| BseDI | CCNNGG | 1 cut(s) | 271 |
| BseXI | GCAGC | 1 cut(s) | 388 |
| BsgI | GTGCAG | 1 cut(s) | 373 |
| BshFI | GGCC | 1 cut(s) | 5 |
| BsnI | GGCC | 1 cut(s) | 5 |
| Bsp143I | GATC | 2 cut(s) | 288, 301 |
| Bsp19I | CCATGG | 1 cut(s) | 271 |
| BspANI | GGCC | 1 cut(s) | 5 |
| BssECI | CCNNGG | 1 cut(s) | 271 |
| BssMI | GATC | 2 cut(s) | 288, 301 |
| BssT1I | CCWWGG | 1 cut(s) | 271 |
| Bst4CI | ACNGT | 2 cut(s) | 156, 255 |
| BstC8I | GCNNGC | 2 cut(s) | 73, 333 |
| BstDSI | CCRYGG | 1 cut(s) | 271 |
| BstKTI | GATC | 2 cut(s) | 291, 304 |
| BstMBI | GATC | 2 cut(s) | 288, 301 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 376 |
| BstV1I | GCAGC | 1 cut(s) | 388 |
| BsuRI | GGCC | 1 cut(s) | 5 |
| BtgI | CCRYGG | 1 cut(s) | 271 |
| BtsIMutI | CAGTG | 1 cut(s) | 251 |
| Cac8I | GCNNGC | 2 cut(s) | 73, 333 |
| Cfr13I | GGNCC | 1 cut(s) | 275 |
| CviAII | CATG | 1 cut(s) | 272 |
| CviJI | RGCY | 5 cut(s) | 5, 169, 353, 370, 379 |
| CviKI_1 | RGCY | 5 cut(s) | 5, 169, 353, 370, 379 |
| DpnI | GATC | 2 cut(s) | 290, 303 |
| DpnII | GATC | 2 cut(s) | 288, 301 |
| DraIII | CACNNNGTG | 1 cut(s) | 176 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eco130I | CCWWGG | 1 cut(s) | 271 |
| Eco32I | GATATC | 1 cut(s) | 18 |
| Eco47I | GGWCC | 1 cut(s) | 275 |
| Eco57I | CTGAAG | 1 cut(s) | 356 |
| EcoRI | GAATTC | 1 cut(s) | 128 |
| EcoRV | GATATC | 1 cut(s) | 18 |
| EcoT14I | CCWWGG | 1 cut(s) | 271 |
| ErhI | CCWWGG | 1 cut(s) | 271 |
| FaeI | CATG | 1 cut(s) | 275 |
| FaiI | YATR | 3 cut(s) | 12, 14, 273 |
| FatI | CATG | 1 cut(s) | 271 |
| FauNDI | CATATG | 1 cut(s) | 12 |
| Fnu4HI | GCNGC | 1 cut(s) | 377 |
| Fsp4HI | GCNGC | 1 cut(s) | 377 |
| FspBI | CTAG | 2 cut(s) | 24, 84 |
| GluI | GCNGC | 1 cut(s) | 377 |
| HaeIII | GGCC | 1 cut(s) | 5 |
| Hin1II | CATG | 1 cut(s) | 275 |
| HinfI | GANTC | 1 cut(s) | 181 |
| HphI | GGTGA | 2 cut(s) | 153, 249 |
| Hpy188I | TCNGA | 1 cut(s) | 186 |
| Hpy188III | TCNNGA | 2 cut(s) | 310, 338 |
| HpyAV | CCTTC | 1 cut(s) | 196 |
| HpyCH4III | ACNGT | 2 cut(s) | 156, 255 |
| HpyCH4V | TGCA | 1 cut(s) | 390 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 376 |
| Hsp92II | CATG | 1 cut(s) | 275 |
| Kzo9I | GATC | 2 cut(s) | 288, 301 |
| LpnPI | CCDG | 3 cut(s) | 85, 138, 277 |
| Lsp1109I | GCAGC | 1 cut(s) | 388 |
| MaeI | CTAG | 2 cut(s) | 24, 84 |
| MaeIII | GTNAC | 1 cut(s) | 255 |
| MalI | GATC | 2 cut(s) | 290, 303 |
| MboI | GATC | 2 cut(s) | 288, 301 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluCI | AATT | 3 cut(s) | 56, 65, 128 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MnlI | CCTC | 2 cut(s) | 131, 343 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 2 cut(s) | 413, 418 |
| MslI | CAYNNNNRTG | 1 cut(s) | 11 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 376 |
| NcoI | CCATGG | 1 cut(s) | 271 |
| NdeI | CATATG | 1 cut(s) | 12 |
| NdeII | GATC | 2 cut(s) | 288, 301 |
| NlaIII | CATG | 1 cut(s) | 275 |
| NmuCI | GTSAC | 1 cut(s) | 255 |
| PfeI | GAWTC | 1 cut(s) | 181 |
| PkrI | GCNGC | 1 cut(s) | 378 |
| PspPI | GGNCC | 1 cut(s) | 275 |
| RseI | CAYNNNNRTG | 1 cut(s) | 11 |
| SaqAI | TTAA | 2 cut(s) | 413, 418 |
| SatI | GCNGC | 1 cut(s) | 377 |
| Sau3AI | GATC | 2 cut(s) | 288, 301 |
| Sau96I | GGNCC | 1 cut(s) | 275 |
| SetI | ASST | 3 cut(s) | 207, 296, 372 |
| SinI | GGWCC | 1 cut(s) | 275 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 11 |
| Sse9I | AATT | 3 cut(s) | 56, 65, 128 |
| SspMI | CTAG | 2 cut(s) | 24, 84 |
| StyI | CCWWGG | 1 cut(s) | 271 |
| TaaI | ACNGT | 2 cut(s) | 156, 255 |
| TasI | AATT | 3 cut(s) | 56, 65, 128 |
| TfiI | GAWTC | 1 cut(s) | 181 |
| Tru1I | TTAA | 2 cut(s) | 413, 418 |
| Tru9I | TTAA | 2 cut(s) | 413, 418 |
| TscAI | CASTG | 1 cut(s) | 258 |
| TseFI | GTSAC | 1 cut(s) | 255 |
| TseI | GCWGC | 1 cut(s) | 376 |
| Tsp45I | GTSAC | 1 cut(s) | 255 |
| TspDTI | ATGAA | 4 cut(s) | 59, 68, 87, 215 |
| TspRI | CASTG | 1 cut(s) | 258 |
| VpaK11BI | GGWCC | 1 cut(s) | 275 |
| XapI | RAATTY | 3 cut(s) | 56, 65, 128 |
| XspI | CTAG | 2 cut(s) | 24, 84 |