Rmu_sc0001772.1_g000040

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001772.1
Physical Location & Seq
Forward (+)
166341 .. 166661
321 bp
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UTR
Exon/CDS
Intron
Rmu_sc0001772.1_g000040.1.cds

Sequence Viewer

Length: 321 bp
ctgtgtggatcagaagaagaagatgatgagggtggtcaagtcttcgtcttctactgctattgttactttgtcttctccactctcatcaacaaaattccgtggtgcattggtcaagattcggttgtcaatcttatttggaaagttgagaagatgacaagcaatccaaagaagttgcagaaggaattggcagaagcaaagaggaggcggcttgaagaaaacgagagagttgaagcacaactaagagaggcacaaaggatggctgatcttgaggccaagcaaaaacaagaccactatgagaaggaaagacaagcccgagtgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

12.59

Weight (kDa)

5.54

Isoelectric Point (pI)

62.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 205
AclWI GGATC 1 cut(s) 16
AcsI RAATTY 1 cut(s) 93
AgsI TTSAA 2 cut(s) 212, 230
AlwI GGATC 1 cut(s) 16
Ama87I CYCGRG 1 cut(s) 312
AoxI GGCC 1 cut(s) 270
ApoI RAATTY 1 cut(s) 93
AvaI CYCGRG 1 cut(s) 312
BbsI GAAGAC 3 cut(s) 34, 40, 64
BccI CCATC 1 cut(s) 250
BisI GCNGC 1 cut(s) 206
BlsI GCNGC 1 cut(s) 207
BmeT110I CYCGRG 1 cut(s) 312
BpiI GAAGAC 3 cut(s) 34, 40, 64
BpuEI CTTGAG 1 cut(s) 287
BsaJI CCNNGG 1 cut(s) 98
BseDI CCNNGG 1 cut(s) 98
BseGI GGATG 1 cut(s) 261
BseRI GAGGAG 1 cut(s) 214
BshFI GGCC 1 cut(s) 272
BsiHKCI CYCGRG 1 cut(s) 312
BsnI GGCC 1 cut(s) 272
BsoBI CYCGRG 1 cut(s) 312
Bsp143I GATC 2 cut(s) 8, 262
BspACI CCGC 1 cut(s) 205
BspANI GGCC 1 cut(s) 272
BspPI GGATC 1 cut(s) 16
BssECI CCNNGG 1 cut(s) 98
BssMI GATC 2 cut(s) 8, 262
BstDEI CTNAG 1 cut(s) 239
BstDSI CCRYGG 1 cut(s) 98
BstF5I GGATG 1 cut(s) 261
BstKTI GATC 2 cut(s) 11, 265
BstMBI GATC 2 cut(s) 8, 262
BstV2I GAAGAC 3 cut(s) 34, 40, 64
BsuRI GGCC 1 cut(s) 272
BtgI CCRYGG 1 cut(s) 98
BtsCI GGATG 1 cut(s) 261
CviJI RGCY 4 cut(s) 208, 260, 272, 311
CviKI_1 RGCY 4 cut(s) 208, 260, 272, 311
DdeI CTNAG 1 cut(s) 239
DpnI GATC 2 cut(s) 10, 264
DpnII GATC 2 cut(s) 8, 262
Eco88I CYCGRG 1 cut(s) 312
FaiI YATR 1 cut(s) 294
Fnu4HI GCNGC 1 cut(s) 206
FokI GGATG 1 cut(s) 268
Fsp4HI GCNGC 1 cut(s) 206
GluI GCNGC 1 cut(s) 206
HaeIII GGCC 1 cut(s) 272
HinfI GANTC 1 cut(s) 116
Hpy188I TCNGA 1 cut(s) 13
Hpy188III TCNNGA 2 cut(s) 113, 266
HpyAV CCTTC 2 cut(s) 172, 292
HpyCH4V TGCA 2 cut(s) 105, 175
HpyF3I CTNAG 1 cut(s) 239
Kzo9I GATC 2 cut(s) 8, 262
MaeIII GTNAC 1 cut(s) 62
MalI GATC 2 cut(s) 10, 264
MboI GATC 2 cut(s) 8, 262
MboII GAAGA 8 cut(s) 26, 29, 32, 34, 40, 64, 160, 224
MluCI AATT 2 cut(s) 93, 182
MnlI CCTC 5 cut(s) 22, 192, 195, 238, 262
NdeII GATC 2 cut(s) 8, 262
PfeI GAWTC 1 cut(s) 116
PkrI GCNGC 1 cut(s) 207
SatI GCNGC 1 cut(s) 206
Sau3AI GATC 2 cut(s) 8, 262
SgeI CNNG 9 cut(s) 50, 111, 125, 168, 221, 232, 278, 286, 296
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
Sse9I AATT 2 cut(s) 93, 182
SsiI CCGC 1 cut(s) 205
TasI AATT 2 cut(s) 93, 182
TauI GCSGC 1 cut(s) 208
TfiI GAWTC 1 cut(s) 116
TspGWI ACGGA 1 cut(s) 87
XapI RAATTY 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.