RchiOBHm_Chr6g0266911

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0008142
Physical Location & Seq
Reverse (-)
23422942 .. 23423712
771 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23939

Sequence Viewer

Length: 516 bp
ATGGCCACCCATATGATATCTTCTAGCAATCACAACGAGATGATGAAGCAGATGAAATTCCCCAAATTTGCCTGCCGACAAACTAGGGTTCAATCTTCATCTTCTTCTCCTTGTTCAGTCCTCTCTGAATTCCCCAAGTTGAAGAAGAAGCAACCGCTTTCACCACAGCCACTCTGTGCGGATCAGAAGAAGAAGATGATGAAGGTGGTCAAGTCTTTGTCTTCTACTGCTACTGCTACTTCGTATTCTCCACTGTCACCAACAAAACTCCATGGTGCATTGGCGAAGATCAGGTTTGCCGATCTTATCTTGAAAGCAGAGAAGCAAATGCTTGCTCTTGACAAAATAGAAGCTGTTGCCAAATGTGAGCTTCAGCAGCCTTACTACTGCACTCTAAAGGAACTTGGGATTTTAACTCGATGTGATTGTGCTTGGTCTTGGGGTTGTTGGGGAGGGCTAACACCTGTAGCCATTGGAGCAGCTAGGTCTCCGTATAAAGGAAGAAGGCGAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

19.03

Weight (kDa)

9.89

Isoelectric Point (pI)

66.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 155, 179
AclWI GGATC 1 cut(s) 189
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 56, 65, 128
AcuI CTGAAG 1 cut(s) 356
AdeI CACNNNGTG 1 cut(s) 176
AfiI CCNNNNNNNGG 1 cut(s) 497
AgsI TTSAA 3 cut(s) 92, 142, 313
AluBI AGCT 3 cut(s) 353, 370, 482
AluI AGCT 3 cut(s) 353, 370, 482
Alw26I GTCTC 1 cut(s) 492
AlwI GGATC 1 cut(s) 189
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 376, 479
ApoI RAATTY 3 cut(s) 56, 65, 128
AsuHPI GGTGA 2 cut(s) 153, 249
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 213
BbvI GCAGC 2 cut(s) 388, 491
BcoDI GTCTC 1 cut(s) 492
BfaI CTAG 3 cut(s) 24, 84, 483
BfmI CTRYAG 1 cut(s) 465
BisI GCNGC 2 cut(s) 377, 480
BlsI GCNGC 2 cut(s) 378, 481
BpiI GAAGAC 1 cut(s) 213
BsaI GGTCTC 1 cut(s) 492
BsaJI CCNNGG 1 cut(s) 271
Bsc4I CCNNNNNNNGG 1 cut(s) 497
BseDI CCNNGG 1 cut(s) 271
BseLI CCNNNNNNNGG 1 cut(s) 497
BseXI GCAGC 2 cut(s) 388, 491
BsgI GTGCAG 1 cut(s) 373
BshFI GGCC 1 cut(s) 5
BslI CCNNNNNNNGG 1 cut(s) 497
BsmAI GTCTC 1 cut(s) 492
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 492
Bsp143I GATC 3 cut(s) 181, 288, 301
Bsp19I CCATGG 1 cut(s) 271
BspACI CCGC 2 cut(s) 155, 179
BspANI GGCC 1 cut(s) 5
BspPI GGATC 1 cut(s) 189
BspTNI GGTCTC 1 cut(s) 492
BssECI CCNNGG 1 cut(s) 271
BssMI GATC 3 cut(s) 181, 288, 301
BssT1I CCWWGG 1 cut(s) 271
Bst4CI ACNGT 1 cut(s) 255
BstC8I GCNNGC 2 cut(s) 73, 333
BstDSI CCRYGG 1 cut(s) 271
BstKTI GATC 3 cut(s) 184, 291, 304
BstMAI GTCTC 1 cut(s) 492
BstMBI GATC 3 cut(s) 181, 288, 301
BstMWI GCNNNNNNNGC 2 cut(s) 376, 476
BstSFI CTRYAG 1 cut(s) 465
BstV1I GCAGC 2 cut(s) 388, 491
BstV2I GAAGAC 1 cut(s) 213
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 271
BtsIMutI CAGTG 1 cut(s) 251
Cac8I GCNNGC 2 cut(s) 73, 333
CviAII CATG 1 cut(s) 272
CviJI RGCY 8 cut(s) 5, 169, 353, 370, 379, 457, 470, 482
CviKI_1 RGCY 8 cut(s) 5, 169, 353, 370, 379, 457, 470, 482
DpnI GATC 3 cut(s) 183, 290, 303
DpnII GATC 3 cut(s) 181, 288, 301
DraIII CACNNNGTG 1 cut(s) 176
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 271
Eco31I GGTCTC 1 cut(s) 492
Eco32I GATATC 1 cut(s) 18
Eco57I CTGAAG 1 cut(s) 356
EcoRI GAATTC 1 cut(s) 128
EcoRV GATATC 1 cut(s) 18
EcoT14I CCWWGG 1 cut(s) 271
ErhI CCWWGG 1 cut(s) 271
FaeI CATG 1 cut(s) 275
FaiI YATR 4 cut(s) 12, 14, 273, 495
FatI CATG 1 cut(s) 271
FauNDI CATATG 1 cut(s) 12
Fnu4HI GCNGC 2 cut(s) 377, 480
Fsp4HI GCNGC 2 cut(s) 377, 480
FspBI CTAG 3 cut(s) 24, 84, 483
GluI GCNGC 2 cut(s) 377, 480
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 1 cut(s) 275
HphI GGTGA 2 cut(s) 153, 249
Hpy188I TCNGA 2 cut(s) 127, 186
Hpy188III TCNNGA 2 cut(s) 310, 338
HpyAV CCTTC 2 cut(s) 196, 498
HpyCH4III ACNGT 1 cut(s) 255
HpyCH4V TGCA 2 cut(s) 278, 390
HpyF10VI GCNNNNNNNGC 2 cut(s) 376, 476
Hsp92II CATG 1 cut(s) 275
Kzo9I GATC 3 cut(s) 181, 288, 301
LmnI GCTCC 1 cut(s) 476
LpnPI CCDG 3 cut(s) 85, 277, 477
Lsp1109I GCAGC 2 cut(s) 388, 491
MaeI CTAG 3 cut(s) 24, 84, 483
MaeIII GTNAC 1 cut(s) 255
MalI GATC 3 cut(s) 183, 290, 303
MboI GATC 3 cut(s) 181, 288, 301
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 56, 65, 128
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 2 cut(s) 131, 446
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 413
MslI CAYNNNNRTG 1 cut(s) 11
Msp20I TGGCCA 1 cut(s) 5
MwoI GCNNNNNNNGC 2 cut(s) 376, 476
NcoI CCATGG 1 cut(s) 271
NdeI CATATG 1 cut(s) 12
NdeII GATC 3 cut(s) 181, 288, 301
NlaIII CATG 1 cut(s) 275
NmuCI GTSAC 1 cut(s) 255
PkrI GCNGC 2 cut(s) 378, 481
RseI CAYNNNNRTG 1 cut(s) 11
SaqAI TTAA 1 cut(s) 413
SatI GCNGC 2 cut(s) 377, 480
Sau3AI GATC 3 cut(s) 181, 288, 301
SetI ASST 7 cut(s) 207, 296, 355, 372, 466, 484, 488
SfcI CTRYAG 1 cut(s) 465
SmiMI CAYNNNNRTG 1 cut(s) 11
Sse9I AATT 3 cut(s) 56, 65, 128
SsiI CCGC 2 cut(s) 155, 179
SspMI CTAG 3 cut(s) 24, 84, 483
StyI CCWWGG 1 cut(s) 271
TaaI ACNGT 1 cut(s) 255
TaqI TCGA 1 cut(s) 418
TasI AATT 3 cut(s) 56, 65, 128
Tru1I TTAA 1 cut(s) 413
Tru9I TTAA 1 cut(s) 413
TscAI CASTG 1 cut(s) 258
TseFI GTSAC 1 cut(s) 255
TseI GCWGC 2 cut(s) 376, 479
Tsp45I GTSAC 1 cut(s) 255
TspDTI ATGAA 4 cut(s) 59, 68, 87, 215
TspGWI ACGGA 1 cut(s) 480
TspRI CASTG 1 cut(s) 258
XapI RAATTY 3 cut(s) 56, 65, 128
XspI CTAG 3 cut(s) 24, 84, 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.