Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0008142

Physical Location & Seq

Genomic Coordinates Reverse (-)

47876533 .. 47877653

Gene Structure 1121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G032760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGGAAAAGGAAAAGGAAAGTTTCCTATTTCTACACCAACCTCCTCTCACTCCAACCCAAAATTCCTCTTTCGCCTTCAAGTTTCCGTTCCCAATTTCAATTTCTATTTCTATTTCTTCTTCTTCGCTCACTGTTTAGTTGAATTCGATCTGGTTTTCGGGTTTCTGAATCCCATGGCCACCCATATGATATCTTCCAGCAACCACAACCAAATGATGGAGCAGATGAAATTCCCCAAGTTTACCTGTCGACAAAGTAGGGTTCAATCTTCATCTTGTTCTCCTTGTTCAGTTCTCCCTGAATTCCCAAAGTTGAAGAAGAAGCGACCAATTTCACCACAGCCACTCTCTGCGGATCAGAAGAAGAAGAAGATGATGGTGGTGGTCAAGTCTTCGTCTTCTACTGCTACTTCGTCTTCTCCACTGTCTCCAACAAAACTCCGTGGTGCATTGGCCAAGATCCGGTTTGCCGATCTTATCTTGAAAGCCGAGAAGCAAATGCTGGAGAAGATCACAAGCGACCCAACCAAGTTGCGGCAGGAATTGGCAGAACGAAAGAGGAGACGGCTTGAAGAAAAGGAGAGGGTTGAAGCCCAGTTAAGAGAGGCACAAAGGATGGCTGATCTCGAGGCCAAGCAGAAACAAGAGGACTCTGAGAAGGAAAGACAAGCTCGAGTGCAACGGCAAAGGAGAAGAGAAAGGCTTGCTCTTGACAAAATGGAAGCTGTCGCTAAATGTGAGCTTCAGCAGCCTTACTGCTGCACCCTCAAGGAACTTGGGATTTTAACTCGATGTGATTGTGCTTGGTCTTGGGGTTGTTGGGGAGGGCAACACCCGTCGCCATTGGAGCTGCTAGGTCTCCGTATCAAGGAAGAAGGCGAAAATGATTTACAAGAAGTTGAGTTGGAGGAAGGCGAGATCGTGGATGAATTGGAGGAAGGAGAGATCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromodomain

Protein Analysis

317

Amino Acids

36.5

Weight (kDa)

9.04

Isoelectric Point (pI)

63.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008142)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g31342 FvH4_6g33791
rosa_chinensis	RchiOBHm_Chr6g0266911
rosa_laevigata	RLG00000001644 RLG00000014058 RLG00000020127
rosa_multiflora	Rmu_sc0001772.1_g000040 Rmu_sc0001772.1_g000076 Rmu_sc0002506.1_g000026
rosa_roxburghii	Rroxscaffold_2G00100850 Rroxscaffold_3G00232130
rosa_samantha	Rh6AG149300 Rh6BG150200 Rh6CG145100 Rh6DG134400 Rh7AG393900 Rh7AG394000 Rh7AG394100 Rh7BG376600 Rh7CG413000 Rh7CG413100 Rh7CG413300 Rh7DG389200
rosa_wichuraiana	Rw7G032760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	217
AccI	GTMKAC	1 cut(s)	250
AciI	CCGC	2 cut(s)	353, 535
AclWI	GGATC	2 cut(s)	363, 454
AcoI	YGGCCR	2 cut(s)	177, 453
AcsI	RAATTY	4 cut(s)	62, 143, 230, 302
AcuI	CTGAAG	1 cut(s)	728
AfiI	CCNNNNNNNGG	4 cut(s)	217, 462, 534, 868
AgsI	TTSAA	8 cut(s)	80, 100, 143, 266, 316, 484, 572, 590
AjuI	GAANNNNNNNTTGG	4 cut(s)	47, 79, 86, 118
AluBI	AGCT	4 cut(s)	671, 725, 742, 850
AluI	AGCT	4 cut(s)	671, 725, 742, 850
Alw26I	GTCTC	3 cut(s)	432, 556, 863
AlwI	GGATC	2 cut(s)	363, 454
Ama87I	CYCGRG	2 cut(s)	626, 672
AoxI	GGCC	3 cut(s)	177, 453, 630
ApeKI	GCWGC	3 cut(s)	748, 759, 850
ApoI	RAATTY	4 cut(s)	62, 143, 230, 302
AsuHPI	GGTGA	1 cut(s)	327
AvaI	CYCGRG	2 cut(s)	626, 672
BalI	TGGCCA	2 cut(s)	179, 455
BbsI	GAAGAC	3 cut(s)	384, 390, 408
BbvI	GCAGC	3 cut(s)	746, 760, 837
BccI	CCATC	3 cut(s)	211, 370, 610
BceAI	ACGGC	2 cut(s)	581, 698
BcoDI	GTCTC	3 cut(s)	432, 556, 863
BfaI	CTAG	1 cut(s)	854
BglII	AGATCT	1 cut(s)	945
BisI	GCNGC	4 cut(s)	536, 749, 760, 851
BlsI	GCNGC	4 cut(s)	537, 750, 761, 852
BmeT110I	CYCGRG	2 cut(s)	626, 672
BmrI	ACTGGG	1 cut(s)	589
BmuI	ACTGGG	1 cut(s)	589
BpiI	GAAGAC	3 cut(s)	384, 390, 408
BpmI	CTGGAG	1 cut(s)	524
BpuEI	CTTGAG	1 cut(s)	752
BsaI	GGTCTC	1 cut(s)	863
BsaJI	CCNNGG	2 cut(s)	174, 442
BsaWI	WCCGGW	1 cut(s)	462
Bsc4I	CCNNNNNNNGG	4 cut(s)	217, 462, 534, 868
Bse1I	ACTGG	1 cut(s)	595
BseDI	CCNNGG	2 cut(s)	174, 442
BseGI	GGATG	2 cut(s)	621, 931
BseLI	CCNNNNNNNGG	4 cut(s)	217, 462, 534, 868
BseMII	CTCAG	1 cut(s)	645
BseNI	ACTGG	1 cut(s)	595
BseRI	GAGGAG	2 cut(s)	34, 574
BseXI	GCAGC	3 cut(s)	746, 760, 837
BsgI	GTGCAG	1 cut(s)	745
BshFI	GGCC	3 cut(s)	179, 455, 632
BsiHKCI	CYCGRG	2 cut(s)	626, 672
BsiSI	CCGG	1 cut(s)	463
BslI	CCNNNNNNNGG	4 cut(s)	217, 462, 534, 868
BsmAI	GTCTC	3 cut(s)	432, 556, 863
BsmBI	CGTCTC	1 cut(s)	556
BsnI	GGCC	3 cut(s)	179, 455, 632
Bso31I	GGTCTC	1 cut(s)	863
BsoBI	CYCGRG	2 cut(s)	626, 672
Bsp143I	GATC	8 cut(s)	148, 355, 459, 472, 510, 622, 918, 945
Bsp19I	CCATGG	1 cut(s)	174
BspACI	CCGC	2 cut(s)	353, 535
BspANI	GGCC	3 cut(s)	179, 455, 632
BspCNI	CTCAG	1 cut(s)	646
BspPI	GGATC	2 cut(s)	363, 454
BspTNI	GGTCTC	1 cut(s)	863
BsrI	ACTGG	1 cut(s)	595
BssECI	CCNNGG	2 cut(s)	174, 442
BssMI	GATC	8 cut(s)	148, 355, 459, 472, 510, 622, 918, 945
BssT1I	CCWWGG	1 cut(s)	174
Bst4CI	ACNGT	2 cut(s)	134, 426
Bst6I	CTCTTC	1 cut(s)	688
BstC8I	GCNNGC	1 cut(s)	705
BstDEI	CTNAG	1 cut(s)	654
BstDSI	CCRYGG	2 cut(s)	174, 442
BstF5I	GGATG	2 cut(s)	621, 931
BstKTI	GATC	8 cut(s)	151, 358, 462, 475, 513, 625, 921, 948
BstMAI	GTCTC	3 cut(s)	432, 556, 863
BstMBI	GATC	8 cut(s)	148, 355, 459, 472, 510, 622, 918, 945
BstMWI	GCNNNNNNNGC	2 cut(s)	748, 847
BstV1I	GCAGC	3 cut(s)	746, 760, 837
BstV2I	GAAGAC	3 cut(s)	384, 390, 408
BstX2I	RGATCY	2 cut(s)	459, 945
BstYI	RGATCY	2 cut(s)	459, 945
BsuRI	GGCC	3 cut(s)	179, 455, 632
BtgI	CCRYGG	2 cut(s)	174, 442
BtsCI	GGATG	2 cut(s)	621, 931
BtsIMutI	CAGTG	2 cut(s)	130, 422
Cac8I	GCNNGC	1 cut(s)	705
CviAII	CATG	1 cut(s)	175
DdeI	CTNAG	1 cut(s)	654
DpnI	GATC	8 cut(s)	150, 357, 461, 474, 512, 624, 920, 947
DpnII	GATC	8 cut(s)	148, 355, 459, 472, 510, 622, 918, 945
EaeI	YGGCCR	2 cut(s)	177, 453
Eam1104I	CTCTTC	1 cut(s)	688
EarI	CTCTTC	1 cut(s)	688
Eco130I	CCWWGG	1 cut(s)	174
Eco31I	GGTCTC	1 cut(s)	863
Eco32I	GATATC	1 cut(s)	192
Eco57I	CTGAAG	1 cut(s)	728
Eco88I	CYCGRG	2 cut(s)	626, 672
EcoRI	GAATTC	2 cut(s)	143, 302
EcoRV	GATATC	1 cut(s)	192
EcoT14I	CCWWGG	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	174
Esp3I	CGTCTC	1 cut(s)	556
FaeI	CATG	1 cut(s)	178
FaiI	YATR	3 cut(s)	176, 186, 188
FatI	CATG	1 cut(s)	174
FauNDI	CATATG	1 cut(s)	186
FblI	GTMKAC	1 cut(s)	250
Fnu4HI	GCNGC	4 cut(s)	536, 749, 760, 851
FokI	GGATG	2 cut(s)	628, 938
Fsp4HI	GCNGC	4 cut(s)	536, 749, 760, 851
FspBI	CTAG	1 cut(s)	854
GluI	GCNGC	4 cut(s)	536, 749, 760, 851
GsuI	CTGGAG	1 cut(s)	524
HaeIII	GGCC	3 cut(s)	179, 455, 632
HapII	CCGG	1 cut(s)	463
Hin1II	CATG	1 cut(s)	178
HincII	GTYRAC	1 cut(s)	251
HindII	GTYRAC	1 cut(s)	251
HinfI	GANTC	2 cut(s)	169, 650
HpaII	CCGG	1 cut(s)	463
HphI	GGTGA	1 cut(s)	327
Hpy166II	GTNNAC	2 cut(s)	243, 251
Hpy188I	TCNGA	3 cut(s)	168, 360, 655
Hpy188III	TCNNGA	3 cut(s)	481, 626, 710
Hpy8I	GTNNAC	2 cut(s)	243, 251
Hpy99I	CGWCG	1 cut(s)	841
HpyAV	CCTTC	5 cut(s)	86, 652, 869, 905, 932
HpyCH4III	ACNGT	2 cut(s)	134, 426
HpyCH4V	TGCA	3 cut(s)	449, 679, 762
HpyF10VI	GCNNNNNNNGC	2 cut(s)	748, 847
HpyF3I	CTNAG	1 cut(s)	654
Hsp92II	CATG	1 cut(s)	178
Kzo9I	GATC	8 cut(s)	148, 355, 459, 472, 510, 622, 918, 945
LmnI	GCTCC	2 cut(s)	220, 847
LpnPI	CCDG	8 cut(s)	137, 211, 259, 312, 476, 488, 524, 608
Lsp1109I	GCAGC	3 cut(s)	746, 760, 837
MaeI	CTAG	1 cut(s)	854
MalI	GATC	8 cut(s)	150, 357, 461, 474, 512, 624, 920, 947
MboI	GATC	8 cut(s)	148, 355, 459, 472, 510, 622, 918, 945
MflI	RGATCY	2 cut(s)	459, 945
MlsI	TGGCCA	2 cut(s)	179, 455
MluCI	AATT	9 cut(s)	62, 94, 100, 143, 230, 302, 330, 542, 929
MluNI	TGGCCA	2 cut(s)	179, 455
MlyI	GAGTC	1 cut(s)	644
MmeI	TCCRAC	3 cut(s)	78, 455, 885
Mox20I	TGGCCA	2 cut(s)	179, 455
MscI	TGGCCA	2 cut(s)	179, 455
MseI	TTAA	2 cut(s)	599, 785
MslI	CAYNNNNRTG	1 cut(s)	185
Msp20I	TGGCCA	2 cut(s)	179, 455
MspI	CCGG	1 cut(s)	463
MwoI	GCNNNNNNNGC	2 cut(s)	748, 847
NcoI	CCATGG	1 cut(s)	174
NdeI	CATATG	1 cut(s)	186
NdeII	GATC	8 cut(s)	148, 355, 459, 472, 510, 622, 918, 945
NlaIII	CATG	1 cut(s)	178
NmeAIII	GCCGAG	1 cut(s)	514
PaeR7I	CTCGAG	2 cut(s)	626, 672
PfeI	GAWTC	1 cut(s)	169
PflMI	CCANNNNNTGG	1 cut(s)	217
PkrI	GCNGC	4 cut(s)	537, 750, 761, 852
PleI	GAGTC	1 cut(s)	644
PpsI	GAGTC	1 cut(s)	644
PspXI	VCTCGAGB	1 cut(s)	672
PsuI	RGATCY	2 cut(s)	459, 945
RseI	CAYNNNNRTG	1 cut(s)	185
SalI	GTCGAC	1 cut(s)	249
SaqAI	TTAA	2 cut(s)	599, 785
SatI	GCNGC	4 cut(s)	536, 749, 760, 851
Sau3AI	GATC	8 cut(s)	148, 355, 459, 472, 510, 622, 918, 945
SchI	GAGTC	1 cut(s)	644
SetI	ASST	7 cut(s)	44, 248, 673, 727, 744, 852, 859
Sfr274I	CTCGAG	2 cut(s)	626, 672
SlaI	CTCGAG	2 cut(s)	626, 672
SmiMI	CAYNNNNRTG	1 cut(s)	185
SmlI	CTYRAG	3 cut(s)	626, 672, 767
SmoI	CTYRAG	3 cut(s)	626, 672, 767
Sse9I	AATT	9 cut(s)	62, 94, 100, 143, 230, 302, 330, 542, 929
SsiI	CCGC	2 cut(s)	353, 535
SspMI	CTAG	1 cut(s)	854
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	2 cut(s)	134, 426
TaqI	TCGA	5 cut(s)	147, 250, 627, 673, 790
TasI	AATT	9 cut(s)	62, 94, 100, 143, 230, 302, 330, 542, 929
TauI	GCSGC	1 cut(s)	538
TfiI	GAWTC	1 cut(s)	169
Tru1I	TTAA	2 cut(s)	599, 785
Tru9I	TTAA	2 cut(s)	599, 785
TscAI	CASTG	2 cut(s)	137, 429
TseI	GCWGC	3 cut(s)	748, 759, 850
TspDTI	ATGAA	3 cut(s)	242, 261, 942
TspGWI	ACGGA	3 cut(s)	76, 431, 851
TspRI	CASTG	2 cut(s)	137, 429
Van91I	CCANNNNNTGG	1 cut(s)	217
XapI	RAATTY	4 cut(s)	62, 143, 230, 302
XhoI	CTCGAG	2 cut(s)	626, 672
XmiI	GTMKAC	1 cut(s)	250
XspI	CTAG	1 cut(s)	854

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.