Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0008142

Physical Location & Seq

Genomic Coordinates Forward (+)

22748359 .. 22750985

Gene Structure 2627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00100850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCCATCGAAATGCTGCTATCATCTAGCAACCAAAACCAGATGATGAAATTCCCCAAATTTGGGTGCCGACAAGTTAGGGTTCACTCTTCTTCTTACAATCACTCGCTTAGTTCTGGGAATTCTTCTTCTTCTTCTTCTGTCCTCCCCGAATACCCCAAGTTAAAGAAGAAGCGATCCCTTGACCTGCACAAACCCGTCTATGTTGATAAGAAAGAGGTGAAGAAGAAGATGAAGGTGGTAAACTCATCCTCTTCTATTGCTACCAACGCTCCTCCATTGTCACCAACAGCACTCCATCATACAATGATCAGGATCCGCTTTGCCAAAACTATCATGAAAGCTCGTAAGATAAGGCTTGAGCATATTACAAGCGATCCGGTGAAGGTGGAGAAGGGATTGGCAGAACTAAAGAGAAAGCAGCTTGAAGAAAAGGAAAGAGTGGAAGCACAGTTAAGAGAAGCGACTGATCTTGAGTCCAAGCAGAAAGTAGAGGACAGTGAAAAGGAAAGACAACTAAAACAAGCTCAATTGGAAAGGCAGAGGAGAAGAGAAAGGCTTGAGCGTGACAAGATGGAGGCTGTTGCTAAATGTAAGCTGCAGCAGCCTACTGCTGCACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

207

Amino Acids

23.8

Weight (kDa)

10.08

Isoelectric Point (pI)

58.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008142)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g31342 FvH4_6g33791
rosa_chinensis	RchiOBHm_Chr6g0266911
rosa_laevigata	RLG00000001644 RLG00000014058 RLG00000020127
rosa_multiflora	Rmu_sc0001772.1_g000040 Rmu_sc0001772.1_g000076 Rmu_sc0002506.1_g000026
rosa_roxburghii	Rroxscaffold_2G00100850 Rroxscaffold_3G00232130
rosa_samantha	Rh6AG149300 Rh6BG150200 Rh6CG145100 Rh6DG134400 Rh7AG393900 Rh7AG394000 Rh7AG394100 Rh7BG376600 Rh7CG413000 Rh7CG413100 Rh7CG413300 Rh7DG389200
rosa_wichuraiana	Rw7G032760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	195
AccB1I	GGYRCC	1 cut(s)	66
AciI	CCGC	1 cut(s)	319
AclWI	GGATC	4 cut(s)	171, 310, 323, 371
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	50, 59, 121
AfiI	CCNNNNNNNGG	2 cut(s)	62, 63
AgsI	TTSAA	1 cut(s)	428
AluBI	AGCT	4 cut(s)	344, 424, 527, 598
AluI	AGCT	4 cut(s)	344, 424, 527, 598
AlwI	GGATC	4 cut(s)	171, 310, 323, 371
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	6 cut(s)	16, 421, 598, 601, 604, 614
ApoI	RAATTY	3 cut(s)	50, 59, 121
AsuHPI	GGTGA	3 cut(s)	232, 276, 394
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	315
BanI	GGYRCC	1 cut(s)	66
BbvI	GCAGC	6 cut(s)	3, 433, 585, 601, 613, 616
BccI	CCATC	3 cut(s)	14, 306, 568
BclI	TGATCA	1 cut(s)	309
BfaI	CTAG	1 cut(s)	27
BfmI	CTRYAG	1 cut(s)	599
BfuAI	ACCTGC	1 cut(s)	195
BisI	GCNGC	6 cut(s)	17, 422, 599, 602, 605, 615
BlsI	GCNGC	6 cut(s)	18, 423, 600, 603, 606, 616
BmiI	GGNNCC	2 cut(s)	68, 317
BpuEI	CTTGAG	3 cut(s)	380, 494, 581
BsaBI	GATNNNNATC	1 cut(s)	314
BsaWI	WCCGGW	1 cut(s)	379
BsaXI	ACNNNNNCTCC	2 cut(s)	256, 286
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 63
Bse8I	GATNNNNATC	1 cut(s)	314
BseGI	GGATG	1 cut(s)	248
BseJI	GATNNNNATC	1 cut(s)	314
BseLI	CCNNNNNNNGG	2 cut(s)	62, 63
BseRI	GAGGAG	2 cut(s)	264, 559
BseXI	GCAGC	6 cut(s)	3, 433, 585, 601, 613, 616
BsgI	GTGCAG	2 cut(s)	173, 600
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	66
BsiSI	CCGG	1 cut(s)	380
BslI	CCNNNNNNNGG	2 cut(s)	62, 63
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	5 cut(s)	176, 309, 315, 376, 469
BspACI	CCGC	1 cut(s)	319
BspANI	GGCC	1 cut(s)	5
BspHI	TCATGA	1 cut(s)	336
BspLI	GGNNCC	2 cut(s)	68, 317
BspMAI	CTGCAG	1 cut(s)	603
BspMI	ACCTGC	1 cut(s)	195
BspPI	GGATC	4 cut(s)	171, 310, 323, 371
BspT107I	GGYRCC	1 cut(s)	66
BssMI	GATC	5 cut(s)	176, 309, 315, 376, 469
Bst4CI	ACNGT	2 cut(s)	453, 500
Bst6I	CTCTTC	3 cut(s)	94, 259, 544
BstDEI	CTNAG	1 cut(s)	110
BstF5I	GGATG	1 cut(s)	248
BstKTI	GATC	5 cut(s)	179, 312, 318, 379, 472
BstMBI	GATC	5 cut(s)	176, 309, 315, 376, 469
BstMWI	GCNNNNNNNGC	2 cut(s)	269, 604
BstSFI	CTRYAG	1 cut(s)	599
BstV1I	GCAGC	6 cut(s)	3, 433, 585, 601, 613, 616
BstX2I	RGATCY	1 cut(s)	315
BstYI	RGATCY	1 cut(s)	315
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	248
BtsIMutI	CAGTG	1 cut(s)	505
BveI	ACCTGC	1 cut(s)	195
CciI	TCATGA	1 cut(s)	336
CviAII	CATG	1 cut(s)	337
CviJI	RGCY	9 cut(s)	5, 344, 358, 424, 527, 559, 581, 598, 607
CviKI_1	RGCY	9 cut(s)	5, 344, 358, 424, 527, 559, 581, 598, 607
DdeI	CTNAG	1 cut(s)	110
DpnI	GATC	5 cut(s)	178, 311, 317, 378, 471
DpnII	GATC	5 cut(s)	176, 309, 315, 376, 469
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	94, 259, 544
EarI	CTCTTC	3 cut(s)	94, 259, 544
EcoRI	GAATTC	1 cut(s)	121
FaeI	CATG	1 cut(s)	340
FaiI	YATR	4 cut(s)	204, 303, 338, 366
FatI	CATG	1 cut(s)	336
FbaI	TGATCA	1 cut(s)	309
Fnu4HI	GCNGC	6 cut(s)	17, 422, 599, 602, 605, 615
FokI	GGATG	1 cut(s)	235
Fsp4HI	GCNGC	6 cut(s)	17, 422, 599, 602, 605, 615
FspBI	CTAG	1 cut(s)	27
GluI	GCNGC	6 cut(s)	17, 422, 599, 602, 605, 615
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	380
Hin1II	CATG	1 cut(s)	340
HinfI	GANTC	1 cut(s)	476
HpaII	CCGG	1 cut(s)	380
HphI	GGTGA	3 cut(s)	232, 276, 394
Hpy166II	GTNNAC	2 cut(s)	85, 244
Hpy188III	TCNNGA	3 cut(s)	313, 337, 473
Hpy8I	GTNNAC	2 cut(s)	85, 244
HpyAV	CCTTC	3 cut(s)	229, 379, 388
HpyCH4III	ACNGT	2 cut(s)	453, 500
HpyCH4V	TGCA	3 cut(s)	190, 601, 617
HpyF10VI	GCNNNNNNNGC	2 cut(s)	269, 604
HpyF3I	CTNAG	1 cut(s)	110
Hsp92II	CATG	1 cut(s)	340
Ksp22I	TGATCA	1 cut(s)	309
Kzo9I	GATC	5 cut(s)	176, 309, 315, 376, 469
LmnI	GCTCC	1 cut(s)	277
LpnPI	CCDG	5 cut(s)	53, 102, 200, 298, 393
Lsp1109I	GCAGC	6 cut(s)	3, 433, 585, 601, 613, 616
MaeI	CTAG	1 cut(s)	27
MaeIII	GTNAC	2 cut(s)	282, 566
MalI	GATC	5 cut(s)	178, 311, 317, 378, 471
MboI	GATC	5 cut(s)	176, 309, 315, 376, 469
MfeI	CAATTG	1 cut(s)	530
MflI	RGATCY	1 cut(s)	315
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	50, 59, 121, 530
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	485
MnlI	CCTC	7 cut(s)	155, 211, 262, 285, 487, 537, 571
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	164, 455
MslI	CAYNNNNRTG	1 cut(s)	11
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	380
MunI	CAATTG	1 cut(s)	530
MwoI	GCNNNNNNNGC	2 cut(s)	269, 604
NdeII	GATC	5 cut(s)	176, 309, 315, 376, 469
NlaIII	CATG	1 cut(s)	340
NlaIV	GGNNCC	2 cut(s)	68, 317
NmuCI	GTSAC	2 cut(s)	282, 566
PagI	TCATGA	1 cut(s)	336
PkrI	GCNGC	6 cut(s)	18, 423, 600, 603, 606, 616
PleI	GAGTC	1 cut(s)	484
PpsI	GAGTC	1 cut(s)	484
PspN4I	GGNNCC	2 cut(s)	68, 317
PstI	CTGCAG	1 cut(s)	603
PsuI	RGATCY	1 cut(s)	315
RseI	CAYNNNNRTG	1 cut(s)	11
SaqAI	TTAA	2 cut(s)	164, 455
SatI	GCNGC	6 cut(s)	17, 422, 599, 602, 605, 615
Sau3AI	GATC	5 cut(s)	176, 309, 315, 376, 469
SchI	GAGTC	1 cut(s)	485
SetI	ASST	8 cut(s)	189, 222, 240, 346, 390, 426, 529, 600
SfcI	CTRYAG	1 cut(s)	599
SmiMI	CAYNNNNRTG	1 cut(s)	11
SmlI	CTYRAG	3 cut(s)	359, 473, 560
SmoI	CTYRAG	3 cut(s)	359, 473, 560
Sse9I	AATT	4 cut(s)	50, 59, 121, 530
SsiI	CCGC	1 cut(s)	319
SspMI	CTAG	1 cut(s)	27
TaaI	ACNGT	2 cut(s)	453, 500
TaqI	TCGA	1 cut(s)	9
TasI	AATT	4 cut(s)	50, 59, 121, 530
Tru1I	TTAA	2 cut(s)	164, 455
Tru9I	TTAA	2 cut(s)	164, 455
TscAI	CASTG	1 cut(s)	505
TseFI	GTSAC	2 cut(s)	282, 566
TseI	GCWGC	6 cut(s)	16, 421, 598, 601, 604, 614
Tsp45I	GTSAC	2 cut(s)	282, 566
TspDTI	ATGAA	3 cut(s)	62, 248, 353
TspRI	CASTG	1 cut(s)	505
XapI	RAATTY	3 cut(s)	50, 59, 121
XspI	CTAG	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.