Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002506.1

Orthogroup ID

OG0008142

Physical Location & Seq

Genomic Coordinates Reverse (-)

116864 .. 117100

Gene Structure 237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002506.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

atggaggctgttgctaaatgtaagctgcagcagccctactgctgcaccctaaagcaacttggaatcttgactcgatgtgatcatgcctggtcttgggggtgttggggagggaaacacctgtcaccattggagcagctaggtctccggatcaaggaagaaggcgaaaatgatatacgagaagttgagttggaggaaggagagatcaatgaggaattggaggaaggagagatctattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

78

Amino Acids

8.98

Weight (kDa)

4.56

Isoelectric Point (pI)

56.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008142)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g31342 FvH4_6g33791
rosa_chinensis	RchiOBHm_Chr6g0266911
rosa_laevigata	RLG00000001644 RLG00000014058 RLG00000020127
rosa_multiflora	Rmu_sc0001772.1_g000040 Rmu_sc0001772.1_g000076 Rmu_sc0002506.1_g000026
rosa_roxburghii	Rroxscaffold_2G00100850 Rroxscaffold_3G00232130
rosa_samantha	Rh6AG149300 Rh6BG150200 Rh6CG145100 Rh6DG134400 Rh7AG393900 Rh7AG394000 Rh7AG394100 Rh7BG376600 Rh7CG413000 Rh7CG413100 Rh7CG413300 Rh7DG389200
rosa_wichuraiana	Rw7G032760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	144
AclWI	GGATC	1 cut(s)	155
AfiI	CCNNNNNNNGG	2 cut(s)	93, 151
AjnI	CCWGG	1 cut(s)	86
AluBI	AGCT	2 cut(s)	25, 136
AluI	AGCT	2 cut(s)	25, 136
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	1 cut(s)	155
Aor13HI	TCCGGA	1 cut(s)	144
ApeKI	GCWGC	5 cut(s)	25, 28, 31, 42, 133
AsuHPI	GGTGA	1 cut(s)	114
BbvI	GCAGC	5 cut(s)	12, 29, 40, 43, 145
BciT130I	CCWGG	1 cut(s)	88
BclI	TGATCA	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	146
BfaI	CTAG	1 cut(s)	137
BfmI	CTRYAG	1 cut(s)	26
BglII	AGATCT	1 cut(s)	228
BisI	GCNGC	5 cut(s)	26, 29, 32, 43, 134
BlsI	GCNGC	5 cut(s)	27, 30, 33, 44, 135
Bme1390I	CCNGG	1 cut(s)	88
BmrFI	CCNGG	1 cut(s)	88
BsaI	GGTCTC	1 cut(s)	146
BsaWI	WCCGGW	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 151
BseAI	TCCGGA	1 cut(s)	144
BseBI	CCWGG	1 cut(s)	88
BseLI	CCNNNNNNNGG	2 cut(s)	93, 151
BseXI	GCAGC	5 cut(s)	12, 29, 40, 43, 145
BsgI	GTGCAG	1 cut(s)	28
BsiSI	CCGG	1 cut(s)	145
BslI	CCNNNNNNNGG	2 cut(s)	93, 151
BsmAI	GTCTC	1 cut(s)	146
Bso31I	GGTCTC	1 cut(s)	146
Bsp13I	TCCGGA	1 cut(s)	144
Bsp143I	GATC	4 cut(s)	79, 147, 201, 228
BspEI	TCCGGA	1 cut(s)	144
BspMAI	CTGCAG	1 cut(s)	30
BspPI	GGATC	1 cut(s)	155
BspTNI	GGTCTC	1 cut(s)	146
BssMI	GATC	4 cut(s)	79, 147, 201, 228
Bst2UI	CCWGG	1 cut(s)	88
BstKTI	GATC	4 cut(s)	82, 150, 204, 231
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	4 cut(s)	79, 147, 201, 228
BstMWI	GCNNNNNNNGC	1 cut(s)	31
BstNI	CCWGG	1 cut(s)	88
BstSCI	CCNGG	1 cut(s)	86
BstSFI	CTRYAG	1 cut(s)	26
BstV1I	GCAGC	5 cut(s)	12, 29, 40, 43, 145
BstX2I	RGATCY	1 cut(s)	228
BstYI	RGATCY	1 cut(s)	228
CviAII	CATG	1 cut(s)	83
CviJI	RGCY	4 cut(s)	8, 25, 34, 136
CviKI_1	RGCY	4 cut(s)	8, 25, 34, 136
DpnI	GATC	4 cut(s)	81, 149, 203, 230
DpnII	GATC	4 cut(s)	79, 147, 201, 228
Eco31I	GGTCTC	1 cut(s)	146
EcoRII	CCWGG	1 cut(s)	86
FaeI	CATG	1 cut(s)	86
FaiI	YATR	2 cut(s)	84, 173
FatI	CATG	1 cut(s)	82
FbaI	TGATCA	1 cut(s)	79
Fnu4HI	GCNGC	5 cut(s)	26, 29, 32, 43, 134
Fsp4HI	GCNGC	5 cut(s)	26, 29, 32, 43, 134
FspBI	CTAG	1 cut(s)	137
GluI	GCNGC	5 cut(s)	26, 29, 32, 43, 134
HapII	CCGG	1 cut(s)	145
Hin1II	CATG	1 cut(s)	86
HinfI	GANTC	2 cut(s)	63, 70
HpaII	CCGG	1 cut(s)	145
HphI	GGTGA	1 cut(s)	114
Hpy188III	TCNNGA	2 cut(s)	67, 145
HpyAV	CCTTC	3 cut(s)	152, 188, 215
HpyCH4V	TGCA	2 cut(s)	28, 45
HpyF10VI	GCNNNNNNNGC	1 cut(s)	31
Hsp92II	CATG	1 cut(s)	86
Kpn2I	TCCGGA	1 cut(s)	144
Ksp22I	TGATCA	1 cut(s)	79
Kzo9I	GATC	4 cut(s)	79, 147, 201, 228
LmnI	GCTCC	1 cut(s)	130
LpnPI	CCDG	4 cut(s)	73, 100, 131, 158
Lsp1109I	GCAGC	5 cut(s)	12, 29, 40, 43, 145
MaeI	CTAG	1 cut(s)	137
MaeIII	GTNAC	1 cut(s)	120
MalI	GATC	4 cut(s)	81, 149, 203, 230
MboI	GATC	4 cut(s)	79, 147, 201, 228
MboII	GAAGA	1 cut(s)	167
MflI	RGATCY	1 cut(s)	228
MluCI	AATT	1 cut(s)	212
MlyI	GAGTC	1 cut(s)	64
MmeI	TCCRAC	1 cut(s)	168
MnlI	CCTC	4 cut(s)	101, 184, 202, 211
MroI	TCCGGA	1 cut(s)	144
MspI	CCGG	1 cut(s)	145
MspR9I	CCNGG	1 cut(s)	88
MvaI	CCWGG	1 cut(s)	88
MwoI	GCNNNNNNNGC	1 cut(s)	31
NdeII	GATC	4 cut(s)	79, 147, 201, 228
NlaIII	CATG	1 cut(s)	86
NmuCI	GTSAC	1 cut(s)	120
PfeI	GAWTC	1 cut(s)	63
PkrI	GCNGC	5 cut(s)	27, 30, 33, 44, 135
PleI	GAGTC	1 cut(s)	64
PpsI	GAGTC	1 cut(s)	64
Psp6I	CCWGG	1 cut(s)	86
PspGI	CCWGG	1 cut(s)	86
PstI	CTGCAG	1 cut(s)	30
PsuI	RGATCY	1 cut(s)	228
SatI	GCNGC	5 cut(s)	26, 29, 32, 43, 134
Sau3AI	GATC	4 cut(s)	79, 147, 201, 228
SchI	GAGTC	1 cut(s)	64
ScrFI	CCNGG	1 cut(s)	88
SetI	ASST	4 cut(s)	27, 120, 138, 142
SfcI	CTRYAG	1 cut(s)	26
Sse9I	AATT	1 cut(s)	212
SspMI	CTAG	1 cut(s)	137
StyD4I	CCNGG	1 cut(s)	86
TaqI	TCGA	1 cut(s)	73
TasI	AATT	1 cut(s)	212
TfiI	GAWTC	1 cut(s)	63
TseFI	GTSAC	1 cut(s)	120
TseI	GCWGC	5 cut(s)	25, 28, 31, 42, 133
Tsp45I	GTSAC	1 cut(s)	120
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.