Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0008142

Physical Location & Seq

Genomic Coordinates Reverse (-)

51603303 .. 51604492

Gene Structure 1190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG394000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCCACCCATATGATATCTTCCAGCAACCACAACCAAATGATGGAGCAGATGAAATTCCCCAAGTTTACCTGCCGACAAAGTAGGGTTCAATCTTCATCTTCTTCTCCTTGTTCAGTTCTCCCTGAATTCCCAAAGTTGAAGAAGAAGCGACCAATTTCAGCACAGCCACTCTCTGCGGATCAGAAGAAGAAGATGATGGTGGTGGTCAAGTCTTCGTCTTCTACTGCTACTTCGTCTTCTCCACTGTCTCCAACAAAACTCCGTGGTGCATTGGCGAAGATCCGGTTTGCCGATCTTATCTCGAAAGCCGAGAAGCAAATGCTGGAGAAGATCACAAGCGACCCAACCAAGTTGCGGCAGGAATTGGCAGAACGAAAGAGGAGACGGCTTGAAGAAAAGGAGAGGGTTGAAGCCCAGTTAAGAGAGGCACAAAGGATGGCTGATCTCGAGGCCAAGCAGAAACAAGAGGACTCTGAGAAGGAAAGACAAGCTCGAGTGCAACGGCAAAGGAGAAGAGAAGGGCTTGCTCTTGACAAAATGGAAGCTGTCGCTAAATGTGAGCTTCAGCAGCCTTACTGCTGCACCCTTAAGGAACTTGGGATTTTAACTCGATGTGATTGTGCTTGGTCTTGGGGTTGTTGGGGAGGGCAACACCCGTCGCCATTGGAGCGGCTAGGTCTCCGTATCAAGGAAGAAGGCCAAAATGATTTACAAGAAGTTGAGTTGGAGGAAGGCGAGATCGTGGATGAATTGGAGGAAGGAGAGATCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromodomain

Protein Analysis

258

Amino Acids

29.5

Weight (kDa)

8.91

Isoelectric Point (pI)

70.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008142)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g31342 FvH4_6g33791
rosa_chinensis	RchiOBHm_Chr6g0266911
rosa_laevigata	RLG00000001644 RLG00000014058 RLG00000020127
rosa_multiflora	Rmu_sc0001772.1_g000040 Rmu_sc0001772.1_g000076 Rmu_sc0002506.1_g000026
rosa_roxburghii	Rroxscaffold_2G00100850 Rroxscaffold_3G00232130
rosa_samantha	Rh6AG149300 Rh6BG150200 Rh6CG145100 Rh6DG134400 Rh7AG393900 Rh7AG394000 Rh7AG394100 Rh7BG376600 Rh7CG413000 Rh7CG413100 Rh7CG413300 Rh7DG389200
rosa_wichuraiana	Rw7G032760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	80
AccB7I	CCANNNNNTGG	1 cut(s)	43
AccBSI	CCGCTC	1 cut(s)	673
AciI	CCGC	3 cut(s)	179, 358, 673
AclWI	GGATC	2 cut(s)	189, 277
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	56, 128
AcuI	CTGAAG	1 cut(s)	551
AfiI	CCNNNNNNNGG	3 cut(s)	43, 357, 691
AflII	CTTAAG	1 cut(s)	590
AgsI	TTSAA	4 cut(s)	92, 142, 395, 413
AluBI	AGCT	3 cut(s)	494, 548, 565
AluI	AGCT	3 cut(s)	494, 548, 565
Alw26I	GTCTC	3 cut(s)	255, 379, 686
AlwI	GGATC	2 cut(s)	189, 277
Ama87I	CYCGRG	2 cut(s)	449, 495
AoxI	GGCC	3 cut(s)	3, 453, 700
ApeKI	GCWGC	2 cut(s)	571, 582
ApoI	RAATTY	2 cut(s)	56, 128
AvaI	CYCGRG	2 cut(s)	449, 495
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	3 cut(s)	207, 213, 231
BbvI	GCAGC	2 cut(s)	569, 583
BccI	CCATC	3 cut(s)	37, 193, 433
BceAI	ACGGC	2 cut(s)	404, 521
BcoDI	GTCTC	3 cut(s)	255, 379, 686
BfaI	CTAG	1 cut(s)	677
BfrI	CTTAAG	1 cut(s)	590
BfuAI	ACCTGC	1 cut(s)	80
BglII	AGATCT	1 cut(s)	768
BisI	GCNGC	4 cut(s)	359, 572, 583, 674
BlsI	GCNGC	4 cut(s)	360, 573, 584, 675
BmeT110I	CYCGRG	2 cut(s)	449, 495
BmrI	ACTGGG	1 cut(s)	412
BmuI	ACTGGG	1 cut(s)	412
BpiI	GAAGAC	3 cut(s)	207, 213, 231
BpmI	CTGGAG	1 cut(s)	347
BsaI	GGTCTC	1 cut(s)	686
BsaJI	CCNNGG	1 cut(s)	265
BsaWI	WCCGGW	1 cut(s)	285
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 357, 691
Bse1I	ACTGG	1 cut(s)	418
BseDI	CCNNGG	1 cut(s)	265
BseGI	GGATG	2 cut(s)	444, 754
BseLI	CCNNNNNNNGG	3 cut(s)	43, 357, 691
BseMII	CTCAG	1 cut(s)	468
BseNI	ACTGG	1 cut(s)	418
BseRI	GAGGAG	1 cut(s)	397
BseXI	GCAGC	2 cut(s)	569, 583
BsgI	GTGCAG	1 cut(s)	568
BshFI	GGCC	3 cut(s)	5, 455, 702
BsiHKCI	CYCGRG	2 cut(s)	449, 495
BsiSI	CCGG	1 cut(s)	286
BslI	CCNNNNNNNGG	3 cut(s)	43, 357, 691
BsmAI	GTCTC	3 cut(s)	255, 379, 686
BsmBI	CGTCTC	1 cut(s)	379
BsnI	GGCC	3 cut(s)	5, 455, 702
Bso31I	GGTCTC	1 cut(s)	686
BsoBI	CYCGRG	2 cut(s)	449, 495
Bsp143I	GATC	7 cut(s)	181, 282, 295, 333, 445, 741, 768
BspACI	CCGC	3 cut(s)	179, 358, 673
BspANI	GGCC	3 cut(s)	5, 455, 702
BspCNI	CTCAG	1 cut(s)	469
BspMI	ACCTGC	1 cut(s)	80
BspPI	GGATC	2 cut(s)	189, 277
BspTI	CTTAAG	1 cut(s)	590
BspTNI	GGTCTC	1 cut(s)	686
BsrBI	CCGCTC	1 cut(s)	673
BsrI	ACTGG	1 cut(s)	418
BssECI	CCNNGG	1 cut(s)	265
BssMI	GATC	7 cut(s)	181, 282, 295, 333, 445, 741, 768
Bst4CI	ACNGT	1 cut(s)	249
Bst6I	CTCTTC	1 cut(s)	511
BstAFI	CTTAAG	1 cut(s)	590
BstC8I	GCNNGC	1 cut(s)	528
BstDEI	CTNAG	1 cut(s)	477
BstDSI	CCRYGG	1 cut(s)	265
BstF5I	GGATG	2 cut(s)	444, 754
BstKTI	GATC	7 cut(s)	184, 285, 298, 336, 448, 744, 771
BstMAI	GTCTC	3 cut(s)	255, 379, 686
BstMBI	GATC	7 cut(s)	181, 282, 295, 333, 445, 741, 768
BstMWI	GCNNNNNNNGC	2 cut(s)	571, 670
BstV1I	GCAGC	2 cut(s)	569, 583
BstV2I	GAAGAC	3 cut(s)	207, 213, 231
BstX2I	RGATCY	2 cut(s)	282, 768
BstYI	RGATCY	2 cut(s)	282, 768
BsuRI	GGCC	3 cut(s)	5, 455, 702
BtgI	CCRYGG	1 cut(s)	265
BtsCI	GGATG	2 cut(s)	444, 754
BtsIMutI	CAGTG	1 cut(s)	245
BveI	ACCTGC	1 cut(s)	80
Cac8I	GCNNGC	1 cut(s)	528
DdeI	CTNAG	1 cut(s)	477
DpnI	GATC	7 cut(s)	183, 284, 297, 335, 447, 743, 770
DpnII	GATC	7 cut(s)	181, 282, 295, 333, 445, 741, 768
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	511
EarI	CTCTTC	1 cut(s)	511
Eco31I	GGTCTC	1 cut(s)	686
Eco32I	GATATC	1 cut(s)	18
Eco57I	CTGAAG	1 cut(s)	551
Eco88I	CYCGRG	2 cut(s)	449, 495
EcoRI	GAATTC	1 cut(s)	128
EcoRV	GATATC	1 cut(s)	18
Esp3I	CGTCTC	1 cut(s)	379
FaiI	YATR	2 cut(s)	12, 14
FauNDI	CATATG	1 cut(s)	12
Fnu4HI	GCNGC	4 cut(s)	359, 572, 583, 674
FokI	GGATG	2 cut(s)	451, 761
Fsp4HI	GCNGC	4 cut(s)	359, 572, 583, 674
FspBI	CTAG	1 cut(s)	677
GluI	GCNGC	4 cut(s)	359, 572, 583, 674
GsuI	CTGGAG	1 cut(s)	347
HaeIII	GGCC	3 cut(s)	5, 455, 702
HapII	CCGG	1 cut(s)	286
HinfI	GANTC	1 cut(s)	473
HpaII	CCGG	1 cut(s)	286
Hpy166II	GTNNAC	1 cut(s)	69
Hpy188I	TCNGA	2 cut(s)	186, 478
Hpy188III	TCNNGA	3 cut(s)	304, 449, 533
Hpy8I	GTNNAC	1 cut(s)	69
Hpy99I	CGWCG	1 cut(s)	664
HpyAV	CCTTC	5 cut(s)	475, 515, 692, 728, 755
HpyCH4III	ACNGT	1 cut(s)	249
HpyCH4V	TGCA	3 cut(s)	272, 502, 585
HpyF10VI	GCNNNNNNNGC	2 cut(s)	571, 670
HpyF3I	CTNAG	1 cut(s)	477
Kzo9I	GATC	7 cut(s)	181, 282, 295, 333, 445, 741, 768
LmnI	GCTCC	2 cut(s)	46, 670
LpnPI	CCDG	7 cut(s)	37, 85, 138, 299, 311, 347, 431
Lsp1109I	GCAGC	2 cut(s)	569, 583
MaeI	CTAG	1 cut(s)	677
MalI	GATC	7 cut(s)	183, 284, 297, 335, 447, 743, 770
MbiI	CCGCTC	1 cut(s)	673
MboI	GATC	7 cut(s)	181, 282, 295, 333, 445, 741, 768
MflI	RGATCY	2 cut(s)	282, 768
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	56, 128, 156, 365, 752
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	467
MmeI	TCCRAC	2 cut(s)	278, 708
MnlI	CCTC	8 cut(s)	375, 399, 421, 445, 463, 641, 724, 751
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	422, 591, 608
MslI	CAYNNNNRTG	1 cut(s)	11
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	590
MspI	CCGG	1 cut(s)	286
MwoI	GCNNNNNNNGC	2 cut(s)	571, 670
NdeI	CATATG	1 cut(s)	12
NdeII	GATC	7 cut(s)	181, 282, 295, 333, 445, 741, 768
NmeAIII	GCCGAG	1 cut(s)	337
PaeR7I	CTCGAG	2 cut(s)	449, 495
PflMI	CCANNNNNTGG	1 cut(s)	43
PkrI	GCNGC	4 cut(s)	360, 573, 584, 675
PleI	GAGTC	1 cut(s)	467
PpsI	GAGTC	1 cut(s)	467
PspXI	VCTCGAGB	1 cut(s)	495
PsuI	RGATCY	2 cut(s)	282, 768
RseI	CAYNNNNRTG	1 cut(s)	11
SaqAI	TTAA	3 cut(s)	422, 591, 608
SatI	GCNGC	4 cut(s)	359, 572, 583, 674
Sau3AI	GATC	7 cut(s)	181, 282, 295, 333, 445, 741, 768
SchI	GAGTC	1 cut(s)	467
SetI	ASST	5 cut(s)	74, 496, 550, 567, 682
Sfr274I	CTCGAG	2 cut(s)	449, 495
SlaI	CTCGAG	2 cut(s)	449, 495
SmiMI	CAYNNNNRTG	1 cut(s)	11
SmlI	CTYRAG	3 cut(s)	449, 495, 590
SmoI	CTYRAG	3 cut(s)	449, 495, 590
Sse9I	AATT	5 cut(s)	56, 128, 156, 365, 752
SsiI	CCGC	3 cut(s)	179, 358, 673
SspMI	CTAG	1 cut(s)	677
TaaI	ACNGT	1 cut(s)	249
TaqI	TCGA	4 cut(s)	305, 450, 496, 613
TasI	AATT	5 cut(s)	56, 128, 156, 365, 752
TauI	GCSGC	2 cut(s)	361, 676
Tru1I	TTAA	3 cut(s)	422, 591, 608
Tru9I	TTAA	3 cut(s)	422, 591, 608
TscAI	CASTG	1 cut(s)	252
TseI	GCWGC	2 cut(s)	571, 582
TspDTI	ATGAA	3 cut(s)	68, 87, 765
TspGWI	ACGGA	2 cut(s)	254, 674
TspRI	CASTG	1 cut(s)	252
Van91I	CCANNNNNTGG	1 cut(s)	43
Vha464I	CTTAAG	1 cut(s)	590
XapI	RAATTY	2 cut(s)	56, 128
XhoI	CTCGAG	2 cut(s)	449, 495
XspI	CTAG	1 cut(s)	677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.