Transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g31342 FvH4_6g33791 |
| rosa_chinensis | RchiOBHm_Chr6g0266911 |
| rosa_laevigata | RLG00000001644 RLG00000014058 RLG00000020127 |
| rosa_multiflora | Rmu_sc0001772.1_g000040 Rmu_sc0001772.1_g000076 Rmu_sc0002506.1_g000026 |
| rosa_roxburghii | Rroxscaffold_2G00100850 Rroxscaffold_3G00232130 |
| rosa_samantha | Rh6AG149300 Rh6BG150200 Rh6CG145100 Rh6DG134400 Rh7AG393900 Rh7AG394000 Rh7AG394100 Rh7BG376600 Rh7CG413000 Rh7CG413100 Rh7CG413300 Rh7DG389200 |
| rosa_wichuraiana | Rw7G032760 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 182, 199, 394 |
| AclWI | GGATC | 1 cut(s) | 149 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 412 |
| AgsI | TTSAA | 4 cut(s) | 118, 206, 224, 391 |
| AluBI | AGCT | 1 cut(s) | 359 |
| AluI | AGCT | 1 cut(s) | 359 |
| Alw26I | GTCTC | 1 cut(s) | 407 |
| AlwI | GGATC | 1 cut(s) | 149 |
| Ama87I | CYCGRG | 2 cut(s) | 260, 306 |
| AoxI | GGCC | 1 cut(s) | 264 |
| AsuHPI | GGTGA | 2 cut(s) | 54, 172 |
| AvaI | CYCGRG | 2 cut(s) | 260, 306 |
| BbsI | GAAGAC | 1 cut(s) | 18 |
| BccI | CCATC | 1 cut(s) | 244 |
| BceAI | ACGGC | 1 cut(s) | 332 |
| BcoDI | GTCTC | 1 cut(s) | 407 |
| BfaI | CTAG | 1 cut(s) | 398 |
| BglII | AGATCT | 1 cut(s) | 489 |
| BisI | GCNGC | 2 cut(s) | 200, 395 |
| BlsI | GCNGC | 2 cut(s) | 201, 396 |
| BmeT110I | CYCGRG | 2 cut(s) | 260, 306 |
| BpiI | GAAGAC | 1 cut(s) | 18 |
| BpuEI | CTTGAG | 1 cut(s) | 158 |
| BsaI | GGTCTC | 1 cut(s) | 407 |
| BsaWI | WCCGGW | 1 cut(s) | 157 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 412 |
| BseGI | GGATG | 2 cut(s) | 255, 475 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 412 |
| BshFI | GGCC | 1 cut(s) | 266 |
| BsiHKCI | CYCGRG | 2 cut(s) | 260, 306 |
| BsiSI | CCGG | 1 cut(s) | 158 |
| BslFI | GGGAC | 1 cut(s) | 255 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 412 |
| BsmAI | GTCTC | 1 cut(s) | 407 |
| BsmFI | GGGAC | 1 cut(s) | 255 |
| BsnI | GGCC | 1 cut(s) | 266 |
| Bso31I | GGTCTC | 1 cut(s) | 407 |
| BsoBI | CYCGRG | 2 cut(s) | 260, 306 |
| Bsp143I | GATC | 7 cut(s) | 93, 106, 144, 154, 256, 462, 489 |
| BspACI | CCGC | 3 cut(s) | 182, 199, 394 |
| BspANI | GGCC | 1 cut(s) | 266 |
| BspPI | GGATC | 1 cut(s) | 149 |
| BspTNI | GGTCTC | 1 cut(s) | 407 |
| BssMI | GATC | 7 cut(s) | 93, 106, 144, 154, 256, 462, 489 |
| Bst4CI | ACNGT | 3 cut(s) | 60, 231, 287 |
| Bst6I | CTCTTC | 2 cut(s) | 188, 322 |
| BstC8I | GCNNGC | 1 cut(s) | 339 |
| BstF5I | GGATG | 2 cut(s) | 255, 475 |
| BstKTI | GATC | 7 cut(s) | 96, 109, 147, 157, 259, 465, 492 |
| BstMAI | GTCTC | 1 cut(s) | 407 |
| BstMBI | GATC | 7 cut(s) | 93, 106, 144, 154, 256, 462, 489 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 391 |
| BstV2I | GAAGAC | 1 cut(s) | 18 |
| BstX2I | RGATCY | 1 cut(s) | 489 |
| BstYI | RGATCY | 1 cut(s) | 489 |
| BsuRI | GGCC | 1 cut(s) | 266 |
| BtsCI | GGATG | 2 cut(s) | 255, 475 |
| BtsIMutI | CAGTG | 1 cut(s) | 56 |
| Cac8I | GCNNGC | 1 cut(s) | 339 |
| CviJI | RGCY | 8 cut(s) | 122, 202, 254, 266, 305, 337, 359, 397 |
| CviKI_1 | RGCY | 8 cut(s) | 122, 202, 254, 266, 305, 337, 359, 397 |
| DpnI | GATC | 7 cut(s) | 95, 108, 146, 156, 258, 464, 491 |
| DpnII | GATC | 7 cut(s) | 93, 106, 144, 154, 256, 462, 489 |
| Eam1104I | CTCTTC | 2 cut(s) | 188, 322 |
| EarI | CTCTTC | 2 cut(s) | 188, 322 |
| EciI | GGCGGA | 1 cut(s) | 197 |
| Eco31I | GGTCTC | 1 cut(s) | 407 |
| Eco88I | CYCGRG | 2 cut(s) | 260, 306 |
| FaiI | YATR | 3 cut(s) | 78, 174, 410 |
| FaqI | GGGAC | 1 cut(s) | 255 |
| Fnu4HI | GCNGC | 2 cut(s) | 200, 395 |
| FokI | GGATG | 2 cut(s) | 262, 482 |
| Fsp4HI | GCNGC | 2 cut(s) | 200, 395 |
| FspBI | CTAG | 1 cut(s) | 398 |
| GluI | GCNGC | 2 cut(s) | 200, 395 |
| HaeIII | GGCC | 1 cut(s) | 266 |
| HapII | CCGG | 1 cut(s) | 158 |
| HpaII | CCGG | 1 cut(s) | 158 |
| HphI | GGTGA | 2 cut(s) | 54, 172 |
| Hpy188III | TCNNGA | 3 cut(s) | 115, 260, 344 |
| HpyAV | CCTTC | 3 cut(s) | 286, 449, 476 |
| HpyCH4III | ACNGT | 3 cut(s) | 60, 231, 287 |
| HpyCH4V | TGCA | 3 cut(s) | 83, 169, 313 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 391 |
| Kzo9I | GATC | 7 cut(s) | 93, 106, 144, 154, 256, 462, 489 |
| LpnPI | CCDG | 3 cut(s) | 82, 171, 392 |
| MaeI | CTAG | 1 cut(s) | 398 |
| MaeIII | GTNAC | 1 cut(s) | 60 |
| MalI | GATC | 7 cut(s) | 95, 108, 146, 156, 258, 464, 491 |
| MboI | GATC | 7 cut(s) | 93, 106, 144, 154, 256, 462, 489 |
| MboII | GAAGA | 7 cut(s) | 18, 103, 154, 205, 218, 339, 491 |
| MflI | RGATCY | 1 cut(s) | 489 |
| MluCI | AATT | 2 cut(s) | 176, 473 |
| MmeI | TCCRAC | 1 cut(s) | 429 |
| MnlI | CCTC | 4 cut(s) | 189, 232, 256, 445 |
| MspI | CCGG | 1 cut(s) | 158 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 391 |
| NdeII | GATC | 7 cut(s) | 93, 106, 144, 154, 256, 462, 489 |
| NmeAIII | GCCGAG | 1 cut(s) | 148 |
| NmuCI | GTSAC | 1 cut(s) | 60 |
| PaeR7I | CTCGAG | 1 cut(s) | 260 |
| PkrI | GCNGC | 2 cut(s) | 201, 396 |
| PsuI | RGATCY | 1 cut(s) | 489 |
| SatI | GCNGC | 2 cut(s) | 200, 395 |
| Sau3AI | GATC | 7 cut(s) | 93, 106, 144, 154, 256, 462, 489 |
| SetI | ASST | 5 cut(s) | 12, 101, 361, 381, 403 |
| Sfr274I | CTCGAG | 1 cut(s) | 260 |
| SlaI | CTCGAG | 1 cut(s) | 260 |
| SmlI | CTYRAG | 2 cut(s) | 137, 260 |
| SmoI | CTYRAG | 2 cut(s) | 137, 260 |
| Sse9I | AATT | 2 cut(s) | 176, 473 |
| SsiI | CCGC | 3 cut(s) | 182, 199, 394 |
| SspMI | CTAG | 1 cut(s) | 398 |
| TaaI | ACNGT | 3 cut(s) | 60, 231, 287 |
| TaqI | TCGA | 1 cut(s) | 261 |
| TasI | AATT | 2 cut(s) | 176, 473 |
| TauI | GCSGC | 2 cut(s) | 202, 397 |
| TscAI | CASTG | 1 cut(s) | 63 |
| TseFI | GTSAC | 1 cut(s) | 60 |
| Tsp45I | GTSAC | 1 cut(s) | 60 |
| TspDTI | ATGAA | 3 cut(s) | 20, 189, 486 |
| TspGWI | ACGGA | 1 cut(s) | 395 |
| TspRI | CASTG | 1 cut(s) | 63 |
| XhoI | CTCGAG | 1 cut(s) | 260 |
| XspI | CTAG | 1 cut(s) | 398 |