Rroxscaffold_3G00232130

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
17732392 .. 17739442
7051 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00232130.1

Sequence Viewer

Length: 270 bp
ATGGTCACCCATATGATATCTTCTAGCAATCACAACGAGATGATGAAGCAGATGAAGTTCCCCAAATTCTCCTACCGACAAAGTAGGGTTCAATCTTCATCTTCTTCTCCACGTTCAGTCCTCCCCGAAATCCCTAAGTTGAAGAAGAAACGATCACTTTCACCATTGCCACTCTATGAACTTCAAGAGGATGGAGGCTATGGCAAGGATGTCATGGAGATGATGGAGCTTGCTTCACGGCTTCAATGCTTGCACAAGGGAGAAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

10.2

Weight (kDa)

9.56

Isoelectric Point (pI)

83.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 65
AgsI TTSAA 4 cut(s) 92, 142, 185, 245
AluBI AGCT 1 cut(s) 229
AluI AGCT 1 cut(s) 229
ApoI RAATTY 1 cut(s) 65
AsuHPI GGTGA 1 cut(s) 153
BccI CCATC 2 cut(s) 185, 217
BceAI ACGGC 1 cut(s) 254
BfaI CTAG 1 cut(s) 24
Bse3DI GCAATG 1 cut(s) 164
BseGI GGATG 2 cut(s) 196, 214
BseMI GCAATG 1 cut(s) 164
Bsp143I GATC 1 cut(s) 152
BsrDI GCAATG 1 cut(s) 164
BssMI GATC 1 cut(s) 152
BstC8I GCNNGC 2 cut(s) 231, 251
BstDEI CTNAG 1 cut(s) 135
BstEII GGTNACC 1 cut(s) 4
BstF5I GGATG 2 cut(s) 196, 214
BstKTI GATC 1 cut(s) 155
BstMBI GATC 1 cut(s) 152
BstPI GGTNACC 1 cut(s) 4
BtsCI GGATG 2 cut(s) 196, 214
Cac8I GCNNGC 2 cut(s) 231, 251
CviAII CATG 1 cut(s) 214
CviJI RGCY 4 cut(s) 198, 229, 241, 267
CviKI_1 RGCY 4 cut(s) 198, 229, 241, 267
DdeI CTNAG 1 cut(s) 135
DpnI GATC 1 cut(s) 154
DpnII GATC 1 cut(s) 152
Eco32I GATATC 1 cut(s) 18
Eco91I GGTNACC 1 cut(s) 4
EcoO65I GGTNACC 1 cut(s) 4
EcoRV GATATC 1 cut(s) 18
FaeI CATG 1 cut(s) 217
FaiI YATR 5 cut(s) 12, 14, 177, 201, 215
FatI CATG 1 cut(s) 213
FauNDI CATATG 1 cut(s) 12
FokI GGATG 2 cut(s) 203, 221
FspBI CTAG 1 cut(s) 24
Hin1II CATG 1 cut(s) 217
HphI GGTGA 1 cut(s) 153
Hpy188III TCNNGA 1 cut(s) 185
HpyAV CCTTC 1 cut(s) 257
HpyCH4IV ACGT 1 cut(s) 112
HpyCH4V TGCA 1 cut(s) 253
HpyF3I CTNAG 1 cut(s) 135
HpySE526I ACGT 1 cut(s) 112
Hsp92II CATG 1 cut(s) 217
Kzo9I GATC 1 cut(s) 152
LmnI GCTCC 1 cut(s) 226
MaeI CTAG 1 cut(s) 24
MaeII ACGT 1 cut(s) 112
MaeIII GTNAC 1 cut(s) 4
MalI GATC 1 cut(s) 154
MboI GATC 1 cut(s) 152
MboII GAAGA 6 cut(s) 12, 87, 93, 96, 154, 157
MluCI AATT 1 cut(s) 65
MnlI CCTC 3 cut(s) 131, 181, 188
MslI CAYNNNNRTG 2 cut(s) 11, 218
NdeI CATATG 1 cut(s) 12
NdeII GATC 1 cut(s) 152
NlaIII CATG 1 cut(s) 217
NmuCI GTSAC 1 cut(s) 4
PspEI GGTNACC 1 cut(s) 4
RseI CAYNNNNRTG 2 cut(s) 11, 218
Sau3AI GATC 1 cut(s) 152
SetI ASST 2 cut(s) 115, 231
SmiMI CAYNNNNRTG 2 cut(s) 11, 218
Sse9I AATT 1 cut(s) 65
SspMI CTAG 1 cut(s) 24
TaiI ACGT 1 cut(s) 115
TasI AATT 1 cut(s) 65
TseFI GTSAC 1 cut(s) 4
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 4 cut(s) 59, 68, 87, 192
XapI RAATTY 1 cut(s) 65
XspI CTAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.