FvH4_6g33791

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
26769077 .. 26769735
659 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g33791.t1

Sequence Viewer

Length: 330 bp
ATGTACATGATGAAGCAAATAAAATCCCCGAAAGTCCCATTCCAACAAGACAAGGTTCAATCTTCTTCCAGAAATTCTTCTTCTTCTACTTATGCTTCTTTTTATTCTCCTTCTTCTGTCCTTCCCGAAAACCCCAAGTTGAAGAAGAAGCGATCCCTTCCCCTATGTGTGGATCAGAAACAAGTGGAGAAGAAGATGAAGGTGGCGATGAAGTCGTCATCTTCTATCAGTACTAGCACCACTCCTCCATTGCCACCCAAAACACTCCGTGGTGCGATGCTCATGATCCGTTTCGTGTGCCATTACAATCTTGAAAGCTCAAAAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.29

Weight (kDa)

10.06

Isoelectric Point (pI)

87.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 147, 180, 280
AcsI RAATTY 1 cut(s) 73
AdeI CACNNNGTG 1 cut(s) 269
AfaI GTAC 2 cut(s) 5, 232
AfiI CCNNNNNNNGG 1 cut(s) 169
AgsI TTSAA 3 cut(s) 59, 142, 314
AluBI AGCT 1 cut(s) 318
AluI AGCT 1 cut(s) 318
AlwI GGATC 3 cut(s) 147, 180, 280
ApoI RAATTY 1 cut(s) 73
Asp700I GAANNNNTTC 1 cut(s) 76
BfaI CTAG 1 cut(s) 234
BmcAI AGTACT 1 cut(s) 232
BmsI GCATC 1 cut(s) 267
BsaJI CCNNGG 1 cut(s) 268
BsaXI ACNNNNNCTCC 2 cut(s) 229, 259
Bsc4I CCNNNNNNNGG 1 cut(s) 169
Bse3DI GCAATG 1 cut(s) 248
BseDI CCNNGG 1 cut(s) 268
BseLI CCNNNNNNNGG 1 cut(s) 169
BseMI GCAATG 1 cut(s) 248
BseRI GAGGAG 1 cut(s) 234
BslFI GGGAC 1 cut(s) 20
BslI CCNNNNNNNGG 1 cut(s) 169
BsmFI GGGAC 1 cut(s) 20
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 3 cut(s) 152, 172, 285
BspHI TCATGA 1 cut(s) 282
BspPI GGATC 3 cut(s) 147, 180, 280
BsrDI GCAATG 1 cut(s) 248
BsrGI TGTACA 1 cut(s) 3
BssECI CCNNGG 1 cut(s) 268
BssMI GATC 3 cut(s) 152, 172, 285
BstAUI TGTACA 1 cut(s) 3
BstDSI CCRYGG 1 cut(s) 268
BstKTI GATC 3 cut(s) 155, 175, 288
BstMBI GATC 3 cut(s) 152, 172, 285
BtgI CCRYGG 1 cut(s) 268
BtgZI GCGATG 2 cut(s) 221, 290
CciI TCATGA 1 cut(s) 282
Csp6I GTAC 2 cut(s) 4, 231
CviAII CATG 2 cut(s) 7, 283
CviJI RGCY 1 cut(s) 318
CviKI_1 RGCY 1 cut(s) 318
CviQI GTAC 2 cut(s) 4, 231
DpnI GATC 3 cut(s) 154, 174, 287
DpnII GATC 3 cut(s) 152, 172, 285
DraIII CACNNNGTG 1 cut(s) 269
FaeI CATG 2 cut(s) 10, 286
FaiI YATR 4 cut(s) 8, 93, 166, 284
FaqI GGGAC 1 cut(s) 20
FatI CATG 2 cut(s) 6, 282
FspBI CTAG 1 cut(s) 234
Hin1II CATG 2 cut(s) 10, 286
Hpy188I TCNGA 1 cut(s) 177
Hpy188III TCNNGA 4 cut(s) 69, 125, 283, 311
HpyAV CCTTC 4 cut(s) 120, 131, 167, 193
Hsp92II CATG 2 cut(s) 10, 286
Kzo9I GATC 3 cut(s) 152, 172, 285
LpnPI CCDG 1 cut(s) 82
LweI GCATC 1 cut(s) 267
MaeI CTAG 1 cut(s) 234
MalI GATC 3 cut(s) 154, 174, 287
MboI GATC 3 cut(s) 152, 172, 285
MluCI AATT 1 cut(s) 73
MmeI TCCRAC 1 cut(s) 67
MnlI CCTC 1 cut(s) 255
MroXI GAANNNNTTC 1 cut(s) 76
NdeII GATC 3 cut(s) 152, 172, 285
NlaIII CATG 2 cut(s) 10, 286
PagI TCATGA 1 cut(s) 282
PdmI GAANNNNTTC 1 cut(s) 76
RsaI GTAC 2 cut(s) 5, 232
RsaNI GTAC 2 cut(s) 4, 231
Sau3AI GATC 3 cut(s) 152, 172, 285
ScaI AGTACT 1 cut(s) 232
SetI ASST 3 cut(s) 57, 204, 320
SfaNI GCATC 1 cut(s) 267
Sse9I AATT 1 cut(s) 73
SspMI CTAG 1 cut(s) 234
TasI AATT 1 cut(s) 73
TatI WGTACW 2 cut(s) 3, 230
TspDTI ATGAA 3 cut(s) 26, 212, 224
TspGWI ACGGA 2 cut(s) 257, 278
XapI RAATTY 1 cut(s) 73
XmnI GAANNNNTTC 1 cut(s) 76
XspI CTAG 1 cut(s) 234
ZrmI AGTACT 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.