Rh7DG389200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0008142
Physical Location & Seq
Reverse (-)
53219805 .. 53220260
456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG389200.1

Sequence Viewer

Length: 456 bp
ATGTTGGAGAAGATCACAAGCGACCCAACCAAGTTGCGGCAGGAATTGGCAGAACGGAAGCGGAGACGGCTTGAAGAAAAGGAGAGGGTTGAAGCCCAGTTAAGAGAGGCACAAAGGATGGCTGATCTCGAGGCCAAGCAGAAACAAGAGGACTCTGAGAAGGAAAGACAAGCTCGAGTGCAACGGCAAAGGAGAAGAGAAAGGCTTGCTCTTGACAAAATGGAAGTTGTCGCTAAATGTGAGCTTCAGCAGCCTTACTGCTGCACCCTTAAGCAACTTGGGATTTTAACTCGATGTGATTGTGCTTGGTCTTGGGGTTGTTGGGAGGGGCAACACCCGTCGCCATTGGAGCTGCTAGGTCTCCGTATCAAGGAAGAAGGCGAAAATGATTTACAAGAAGTTGAGTTGGAGGAAGGCGAGATCGTGGATGAATTGGAGGAAGGAGAGATCTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

17.88

Weight (kDa)

5.0

Isoelectric Point (pI)

70.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 37, 61
AcuI CTGAAG 1 cut(s) 230
AfiI CCNNNNNNNGG 2 cut(s) 36, 370
AflII CTTAAG 1 cut(s) 269
AgsI TTSAA 2 cut(s) 74, 92
AluBI AGCT 3 cut(s) 173, 244, 352
AluI AGCT 3 cut(s) 173, 244, 352
Alw26I GTCTC 2 cut(s) 58, 365
Ama87I CYCGRG 2 cut(s) 128, 174
AoxI GGCC 1 cut(s) 132
ApeKI GCWGC 3 cut(s) 250, 261, 352
AvaI CYCGRG 2 cut(s) 128, 174
BbvI GCAGC 3 cut(s) 248, 262, 339
BccI CCATC 1 cut(s) 112
BceAI ACGGC 2 cut(s) 83, 200
BcoDI GTCTC 2 cut(s) 58, 365
BfaI CTAG 1 cut(s) 356
BfrI CTTAAG 1 cut(s) 269
BglII AGATCT 1 cut(s) 447
BisI GCNGC 4 cut(s) 38, 251, 262, 353
BlsI GCNGC 4 cut(s) 39, 252, 263, 354
BmeT110I CYCGRG 2 cut(s) 128, 174
BmrI ACTGGG 1 cut(s) 91
BmuI ACTGGG 1 cut(s) 91
BsaI GGTCTC 1 cut(s) 365
Bsc4I CCNNNNNNNGG 2 cut(s) 36, 370
Bse1I ACTGG 1 cut(s) 97
BseGI GGATG 2 cut(s) 123, 433
BseLI CCNNNNNNNGG 2 cut(s) 36, 370
BseMII CTCAG 1 cut(s) 147
BseNI ACTGG 1 cut(s) 97
BseXI GCAGC 3 cut(s) 248, 262, 339
BsgI GTGCAG 1 cut(s) 247
BshFI GGCC 1 cut(s) 134
BsiHKCI CYCGRG 2 cut(s) 128, 174
BslI CCNNNNNNNGG 2 cut(s) 36, 370
BsmAI GTCTC 2 cut(s) 58, 365
BsmBI CGTCTC 1 cut(s) 58
BsnI GGCC 1 cut(s) 134
Bso31I GGTCTC 1 cut(s) 365
BsoBI CYCGRG 2 cut(s) 128, 174
Bsp143I GATC 4 cut(s) 12, 124, 420, 447
BspACI CCGC 2 cut(s) 37, 61
BspANI GGCC 1 cut(s) 134
BspCNI CTCAG 1 cut(s) 148
BspTI CTTAAG 1 cut(s) 269
BspTNI GGTCTC 1 cut(s) 365
BsrI ACTGG 1 cut(s) 97
BssMI GATC 4 cut(s) 12, 124, 420, 447
Bst6I CTCTTC 1 cut(s) 190
BstAFI CTTAAG 1 cut(s) 269
BstC8I GCNNGC 1 cut(s) 207
BstDEI CTNAG 1 cut(s) 156
BstF5I GGATG 2 cut(s) 123, 433
BstKTI GATC 4 cut(s) 15, 127, 423, 450
BstMAI GTCTC 2 cut(s) 58, 365
BstMBI GATC 4 cut(s) 12, 124, 420, 447
BstMWI GCNNNNNNNGC 3 cut(s) 67, 250, 349
BstV1I GCAGC 3 cut(s) 248, 262, 339
BstX2I RGATCY 1 cut(s) 447
BstYI RGATCY 1 cut(s) 447
BsuRI GGCC 1 cut(s) 134
BtsCI GGATG 2 cut(s) 123, 433
Cac8I GCNNGC 1 cut(s) 207
CviJI RGCY 9 cut(s) 70, 95, 122, 134, 173, 205, 244, 253, 352
CviKI_1 RGCY 9 cut(s) 70, 95, 122, 134, 173, 205, 244, 253, 352
DdeI CTNAG 1 cut(s) 156
DpnI GATC 4 cut(s) 14, 126, 422, 449
DpnII GATC 4 cut(s) 12, 124, 420, 447
Eam1104I CTCTTC 1 cut(s) 190
EarI CTCTTC 1 cut(s) 190
Eco31I GGTCTC 1 cut(s) 365
Eco57I CTGAAG 1 cut(s) 230
Eco88I CYCGRG 2 cut(s) 128, 174
Esp3I CGTCTC 1 cut(s) 58
Fnu4HI GCNGC 4 cut(s) 38, 251, 262, 353
FokI GGATG 2 cut(s) 130, 440
Fsp4HI GCNGC 4 cut(s) 38, 251, 262, 353
FspBI CTAG 1 cut(s) 356
GluI GCNGC 4 cut(s) 38, 251, 262, 353
HaeIII GGCC 1 cut(s) 134
HinfI GANTC 1 cut(s) 152
Hpy188I TCNGA 1 cut(s) 157
Hpy188III TCNNGA 2 cut(s) 128, 212
Hpy99I CGWCG 1 cut(s) 343
HpyAV CCTTC 4 cut(s) 154, 371, 407, 434
HpyCH4V TGCA 2 cut(s) 181, 264
HpyF10VI GCNNNNNNNGC 3 cut(s) 67, 250, 349
HpyF3I CTNAG 1 cut(s) 156
Kzo9I GATC 4 cut(s) 12, 124, 420, 447
LmnI GCTCC 1 cut(s) 349
LpnPI CCDG 2 cut(s) 26, 110
Lsp1109I GCAGC 3 cut(s) 248, 262, 339
MaeI CTAG 1 cut(s) 356
MalI GATC 4 cut(s) 14, 126, 422, 449
MboI GATC 4 cut(s) 12, 124, 420, 447
MboII GAAGA 4 cut(s) 22, 86, 207, 386
MflI RGATCY 1 cut(s) 447
MluCI AATT 2 cut(s) 44, 431
MlyI GAGTC 1 cut(s) 146
MmeI TCCRAC 1 cut(s) 387
MnlI CCTC 7 cut(s) 78, 100, 124, 142, 319, 403, 430
MseI TTAA 3 cut(s) 101, 270, 287
MspCI CTTAAG 1 cut(s) 269
MwoI GCNNNNNNNGC 3 cut(s) 67, 250, 349
NdeII GATC 4 cut(s) 12, 124, 420, 447
PaeR7I CTCGAG 2 cut(s) 128, 174
PkrI GCNGC 4 cut(s) 39, 252, 263, 354
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
PspXI VCTCGAGB 1 cut(s) 174
PsuI RGATCY 1 cut(s) 447
SaqAI TTAA 3 cut(s) 101, 270, 287
SatI GCNGC 4 cut(s) 38, 251, 262, 353
Sau3AI GATC 4 cut(s) 12, 124, 420, 447
SchI GAGTC 1 cut(s) 146
SetI ASST 4 cut(s) 175, 246, 354, 361
Sfr274I CTCGAG 2 cut(s) 128, 174
SlaI CTCGAG 2 cut(s) 128, 174
SmlI CTYRAG 3 cut(s) 128, 174, 269
SmoI CTYRAG 3 cut(s) 128, 174, 269
Sse9I AATT 2 cut(s) 44, 431
SsiI CCGC 2 cut(s) 37, 61
SspMI CTAG 1 cut(s) 356
TaqI TCGA 3 cut(s) 129, 175, 292
TasI AATT 2 cut(s) 44, 431
TauI GCSGC 1 cut(s) 40
Tru1I TTAA 3 cut(s) 101, 270, 287
Tru9I TTAA 3 cut(s) 101, 270, 287
TseI GCWGC 3 cut(s) 250, 261, 352
TspDTI ATGAA 1 cut(s) 444
TspGWI ACGGA 2 cut(s) 70, 353
Vha464I CTTAAG 1 cut(s) 269
XhoI CTCGAG 2 cut(s) 128, 174
XspI CTAG 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.