Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003584

Physical Location & Seq

Genomic Coordinates Reverse (-)

22884114 .. 22889887

Gene Structure 5774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g31720.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3231 bp

ATGAGAATTTGGGCACGGCAGACAGAAATTGAAGAGTTCAAGAGCCTTGCTCAGCCTCGGCTGCTACCGACGTCGGTGATCGGAACAGAGCAATCCAGTTTTGAGATTTCAGTGAAGACATCGGCGGCGGCGATAGGCGTGCCGGTGAAGTCTCTGCTCGACCACCCTAACCCTACTCCGGGCATCGACAAGCAATTCCTGGCGGCGCCGATCAAGTCCGCAACCGACAAATTCGCACTCCTGCCGGAGCTCCTGAAGGTCAGAGGCGTCGTCAGAGAGCACCTGGACTCCTTCAACTACTTCGTCAACACCGGAATCAACCGAATCGTCCGCGCCAATGACCGCATTGTCTCCGAGCTCGATCCCAGAATCTACATCAAGTTCCTTAACGTCGAGATCGGCGAGGCCTCCGTCACTAGAGACGGCGTCACCGATAGTATTGCTCCACATACTTGCAGATTATCCGACATGACGTATTCGGCTCCGGTGAAGGTTACGGTGGAGTATGTGGAAGGGGCGCATGATCTGACGCCGAGAAGGAAAGAAGGTGTCAGGATTTGCACAATGCCGATTATGCTGAGGAGTTGCAAGTGTCATTTGGCAGGGAAGAGCGAATTGGAGCTTGCGAGGCTCGGGGAGTGTCCGCTGGATTCTGGAGGCTATTTTGTGATCAAAGGGAGTGAGAGGGTGCTACTGATTCAGGAGCAGCTTTCGAAGAACAGGATTATTATTGATAAGGATAAGAAGGGGAATGTGACTGCTTCTGTGACTAGTAGTACTGAGAAAATGAAGAGCAAGACTATGATTGAGTTTGATAAGAAGAAGAAGACCATTTCGTTGCTGCTCAATGCGTTTGATAAGAAGGTGCCGATTATGGTGGTTATGAAGGCGATGGGGATGCAGAGTGATCAGGAAGTAGTGCAGATGCTTGGGAGGGATCCGAGATATGGTGCATTGTTGTTGCCGTCTGTTGAGGAATGTGCAAAGGTGGAGATATACAACAAGGAGCAGGCGTTGGTGTATTTGGAAGGAAAGCTGACGAAGAAGCGCGTGAAGGATGATACTCATGGTAGAGTCATCTTGGTTCTTGCTGATGTGCTTCTTTCTAATGTTGCGGTGAGGCGGGGGAATTTTCATCCGAAATGCATGTATGTTGGTGTCATGTTGAGACGCATGATGGATGCAGTTTTGAACAAGGGTGCAGTTGATGACACGGATTATGTTGGCAACAAGAGGATGAAAAAGTCCGGGGTGACTCAGGTGCTAACTAGATTATCATTTATAGGAGCTCTGGGCTCAATGACCAAAACAAAGCCGCAAGTTGAGAAGTCGTTGAAAGTAAGTGGAGCTAGAGCCTTGCAACCTAGTCAATGGGGAATGCTTTGTCCTTGTGACACTCCAGAAGGTCAAGATATTGGACTGGTGAAGAACTTGGCCCTAATGGCTCATGTCACAACTGATGAAGAGGATGGTCCATTGATTTCTCTGTGCTACTCTTTGGGTGTTGAAGACTTCGAACAACTATCAGCAGAGGAGCTTCACTCGCAGCATTCTTTTCTGGTTTTTTTTAATGGAAGTATCCTCGGAGTGCATAGAAAGCCACAACGGTTTGCCAATGGAATGAGAAAGTTTCGTAGAGCTGGAAAAATTGGGCAGTTTGTGAGTGTCTTTGTCAATGAGAAGCAGAGTTGTGTTCAAATTGCTTCTGATGGTGGTCGAGTTTGTCGTCCATTGATTATTGCTGACAAGGGCATCTCGAGGGTGAAAGGACATCACATGGAGGAGTTGAAGGCTGGCTACCGTACTTTCAACGATTTTTTGAATGACGGTTTGATCGAGTATCTTGATGTCAATGAGCAGAACAATGCTTTGATTGCTCTGTATGAAAACCAAGCAACAGCAGAAACAACCCATATTGAAATAGAGCCTTTAGGCATCTTGGGTGTTATTGCTGGACTTATTCCGTATCCTCATCATAATCAGTCACCCAGAAATACTTACCAGTGTGCTATGGGAAAACAAGCAATGGGGAATATTGCCTATAACCAACTGCGTCGGATGGACACGCTTCTCTACCTACTTGTGTATCCTCAAAGGCCATTATTGACTACCAAGACAATTGAGCTGGTGGGGTATGATAAACTTGGAGCTGGGCAGAATGCAACTGTGGCTGTGATGAGTTACAGTGGCTACGACATAGAGGACGCAATAGTGATGAACAAGTCATCTCTGGATCGTGGGTTTGGTTGTTCTATATATATGAAAAGGTTCAGCGATGGCATCAAAACTTATAAAACTCGAGGGACTGAAGTCGTCAAACAAGACATAGTAGCCTGCCCTGCAGATAGAAATGGAAGAGGCATGCGGGTGCTTGATGATGATGGAATTGCTTTACCTGGAGAGATTATTGCACCAGATGACATCCTTCTGAACAAACAGGTCCCAAGTACAAAAACGGCAGGACATAGGCCTGCACCCTTGAAATACAAAGGACCTCAAGGGGAGTCTTACGTGCTGGATAAAGTCTCGATGTATCCTGATACATATAATAATTTGCAGTGCAAATTCTTAGTTCGCCATACTCGTAGACCAGAGGTTGGTGACAAATTCAGTAGCAGACATGGCCAGAAAGGTGTCTGTGGTACCATTGTCCAACAGGAAGATCTCCCATTTTCTGAACGTGGCATTTGCCCTGACCTAATTATGAACCCTCATGGATTTCCAAGTCGGATGACTGTAGGGAAGATGATAGAGCTTCTTGGGAGTAAAGCAGGAGTTTCATGTGGCAGGTTTCACTATGGTAGTGCCTTCGGTGAACTAAGTGGTCATGCAGACAAGGTTGAAACCATTACTGAAACTCTTGTGAATATGGGATTCAGCTATGATGGCAAGGACTTTCTTTACTCAGGACTCACAGGTAGCCCATTACAAGCATATATTTTCATGTTTACTACCAGAGGTGAAATGGAGCGTGACTGTCTGGTTGCTTATGGTGCAAGTATGTTGGCTTATGAGCGCCTAATGCTCGCTAGTGATCCTTATGATATTCATGTCTGCAGAGAGTGTGGTTTGCTCGGCTATTATGACCATAAGCGGAAATCTGCAATATGCACCAAATGTGGAAATGGGGATGTTATGGCTACCATGAAGCTTCCATATGCTTGCAAGCTCTTGATCCAGGAACTCCAGTCCATGAATATTGTTCCTCGCTTGAAATTGACAGATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0001817 GO:0001819 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006383 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009553 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032479 GO:0032481 GO:0032501 GO:0032502 GO:0032648 GO:0032728 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045088 GO:0045089 GO:0046483 GO:0048229 GO:0048518 GO:0048583 GO:0048584 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0051239 GO:0051240 GO:0055029 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080134 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

1077

Amino Acids

119.45

Weight (kDa)

8.79

Isoelectric Point (pI)

40.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb2_1	PF04563	90 - 384	8.5e-41	RNA polymerase beta subunit
RNA_pol_Rpb2_2	PF04561	239 - 413	2.5e-23	RNA polymerase Rpb2, domain 2
RNA_pol_Rpb2_3	PF04565	420 - 484	9.7e-17	RNA polymerase Rpb2, domain 3
RNA_pol_Rpb2_4	PF04566	521 - 581	1.4e-24	RNA polymerase Rpb2, domain 4
RNA_pol_Rpb2_6	PF00562	650 - 982	2.5e-104	RNA polymerase Rpb2, domain 6
RNA_pol_Rpb2_7	PF04560	987 - 1072	6e-24	RNA polymerase Rpb2, domain 7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45140 AT5G45140 AT5G45140
fragaria_vesca	FvH4_5g31720 FvH4_7g03930
malus_domestica	MD14G1029000.v1.1
prunus_persica	Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1
pyrus_communis	pycom14g02710
rosa_chinensis	RchiOBHm_Chr1g0327591 RchiOBHm_Chr7g0227611
rosa_laevigata	RLG00000001632 RLG00000029981
rosa_multiflora	Rmu_co8491793.1_g000001 Rmu_sc0001772.1_g000005 Rmu_ssc0000042.1_g000027
rosa_roxburghii	Rroxscaffold_3G00232000 Rroxscaffold_4G00322550
rosa_rugosa	Rorug01G0068500 Rorug07G0242400
rosa_samantha	Rh1AG085800 Rh1BG068400 Rh1CG083300 Rh1DG090000 Rh7AG395800 Rh7BG377500 Rh7CG414500 Rh7DG391600
rosa_wichuraiana	Rw1G006690 Rw7G032920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2292
AasI	GACNNNNNNGTC	1 cut(s)	347
AatII	GACGTC	1 cut(s)	74
Acc36I	ACCTGC	1 cut(s)	2778
Acc65I	GGTACC	1 cut(s)	2642
AccB1I	GGYRCC	3 cut(s)	205, 865, 2642
AccB7I	CCANNNNNTGG	1 cut(s)	2597
AccI	GTMKAC	1 cut(s)	2587
AccII	CGCG	2 cut(s)	333, 1050
AclWI	GGATC	6 cut(s)	356, 932, 945, 2241, 3029, 3169
AcoI	YGGCCR	1 cut(s)	2623
AcsI	RAATTY	5 cut(s)	6, 230, 1129, 2564, 2606
AcuI	CTGAAG	2 cut(s)	275, 2328
AcyI	GRCGYC	5 cut(s)	71, 206, 267, 426, 530
AfaI	GTAC	4 cut(s)	778, 1804, 2449, 2644
AfiI	CCNNNNNNNGG	4 cut(s)	178, 179, 947, 2597
AhlI	ACTAGT	1 cut(s)	770
AjnI	CCWGG	4 cut(s)	198, 282, 2395, 3177
AjuI	GAANNNNNNNTTGG	2 cut(s)	599, 631
Alw21I	GWGCWC	4 cut(s)	252, 282, 360, 1291
Alw26I	GTCTC	5 cut(s)	156, 355, 414, 1162, 2530
AlwI	GGATC	6 cut(s)	356, 932, 945, 2241, 3029, 3169
Ama87I	CYCGRG	3 cut(s)	632, 1756, 2298
AoxI	GGCC	5 cut(s)	405, 1434, 2096, 2468, 2623
ApeKI	GCWGC	4 cut(s)	61, 706, 841, 1546
ApoI	RAATTY	5 cut(s)	6, 230, 1129, 2564, 2606
Asp700I	GAANNNNTTC	1 cut(s)	2267
Asp718I	GGTACC	1 cut(s)	2642
AspLEI	GCGC	5 cut(s)	208, 335, 520, 1050, 3018
AspS9I	GGNCC	4 cut(s)	1435, 1472, 2440, 2492
AsuC2I	CCSGG	2 cut(s)	180, 1249
AsuII	TTCGAA	2 cut(s)	713, 1515
AvaI	CYCGRG	3 cut(s)	632, 1756, 2298
AvaII	GGWCC	3 cut(s)	1472, 2440, 2492
BaeGI	GKGCMC	1 cut(s)	16
BaeI	ACNNNNGTAYC	4 cut(s)	2069, 2102, 2634, 2667
BalI	TGGCCA	1 cut(s)	2625
BamHI	GGATCC	1 cut(s)	937
BanI	GGYRCC	3 cut(s)	205, 865, 2642
BanII	GRGCYC	4 cut(s)	252, 360, 1291, 1298
BarI	GAAGNNNNNNTAC	2 cut(s)	1781, 1813
BbsI	GAAGAC	3 cut(s)	122, 833, 1515
Bbv12I	GWGCWC	4 cut(s)	252, 282, 360, 1291
BbvCI	CCTCAGC	1 cut(s)	578
BbvI	GCAGC	4 cut(s)	48, 718, 828, 1558
BccI	CCATC	8 cut(s)	886, 1171, 1463, 1703, 2053, 2270, 2375, 2879
BceAI	ACGGC	4 cut(s)	32, 439, 949, 2472
BcgI	CGANNNNNNTGC	6 cut(s)	121, 155, 422, 456, 880, 914
BciT130I	CCWGG	4 cut(s)	200, 284, 2397, 3179
BciVI	GTATCC	4 cut(s)	1589, 1977, 2097, 2544
BclI	TGATCA	2 cut(s)	669, 907
BcnI	CCSGG	2 cut(s)	180, 1249
BcoDI	GTCTC	5 cut(s)	156, 355, 414, 1162, 2530
BcuI	ACTAGT	1 cut(s)	770
BfaI	CTAG	6 cut(s)	417, 771, 1269, 1350, 1365, 3030
BfmI	CTRYAG	3 cut(s)	2340, 2736, 3055
BfoI	RGCGCY	2 cut(s)	209, 3019
BfuAI	ACCTGC	1 cut(s)	2778
BfuI	GTATCC	4 cut(s)	1589, 1977, 2097, 2544
BglI	GCCNNNNNGGC	1 cut(s)	1442
BglII	AGATCT	1 cut(s)	2662
BisI	GCNGC	8 cut(s)	62, 126, 129, 204, 707, 842, 1316, 1547
BlpI	GCTNAGC	1 cut(s)	51
BlsI	GCNGC	8 cut(s)	63, 127, 130, 205, 708, 843, 1317, 1548
BmcAI	AGTACT	1 cut(s)	778
Bme1390I	CCNGG	6 cut(s)	180, 200, 284, 1249, 2397, 3179
Bme18I	GGWCC	3 cut(s)	1472, 2440, 2492
BmeT110I	CYCGRG	3 cut(s)	632, 1756, 2298
BmgT120I	GGNCC	4 cut(s)	1435, 1472, 2440, 2492
BmiI	GGNNCC	6 cut(s)	207, 483, 867, 939, 2442, 2644
BmrFI	CCNGG	6 cut(s)	180, 200, 284, 1249, 2397, 3179
BmsI	GCATC	8 cut(s)	192, 888, 915, 1171, 1761, 1944, 2289, 3214
BoxI	GACNNNNGTC	1 cut(s)	2309
BpiI	GAAGAC	3 cut(s)	122, 833, 1515
BplI	GAGNNNNNCTC	4 cut(s)	34, 66, 1526, 1558
BpmI	CTGGAG	4 cut(s)	675, 1383, 2418, 3170
Bpu10I	CCTNAGC	1 cut(s)	578
Bpu1102I	GCTNAGC	1 cut(s)	51
Bpu14I	TTCGAA	2 cut(s)	713, 1515
BpuEI	CTTGAG	1 cut(s)	2481
BpuMI	CCSGG	2 cut(s)	180, 1249
BsaAI	YACGTR	1 cut(s)	2512
BsaHI	GRCGYC	5 cut(s)	71, 206, 267, 426, 530
BsaJI	CCNNGG	3 cut(s)	56, 1248, 1582
BsaWI	WCCGGW	2 cut(s)	311, 484
BsaXI	ACNNNNNCTCC	4 cut(s)	272, 302, 998, 1028
Bsc4I	CCNNNNNNNGG	4 cut(s)	178, 179, 947, 2597
Bse118I	RCCGGY	1 cut(s)	142
Bse1I	ACTGG	4 cut(s)	96, 1425, 2002, 3187
Bse3DI	GCAATG	1 cut(s)	2031
BseBI	CCWGG	4 cut(s)	200, 284, 2397, 3179
BseDI	CCNNGG	3 cut(s)	56, 1248, 1582
BseLI	CCNNNNNNNGG	4 cut(s)	178, 179, 947, 2597
BseMI	GCAATG	1 cut(s)	2031
BseMII	CTCAG	5 cut(s)	65, 569, 771, 1271, 2919
BseNI	ACTGG	4 cut(s)	96, 1425, 2002, 3187
BseRI	GAGGAG	3 cut(s)	595, 1547, 1796
BseSI	GKGCMC	1 cut(s)	16
BseXI	GCAGC	4 cut(s)	48, 718, 828, 1558
BseYI	CCCAGC	1 cut(s)	2150
BsgI	GTGCAG	3 cut(s)	941, 1221, 2457
Bsh1236I	CGCG	2 cut(s)	333, 1050
BshFI	GGCC	5 cut(s)	407, 1436, 2098, 2470, 2625
BshNI	GGYRCC	3 cut(s)	205, 865, 2642
BsiHKAI	GWGCWC	4 cut(s)	252, 282, 360, 1291
BsiHKCI	CYCGRG	3 cut(s)	632, 1756, 2298
BsiSI	CCGG	6 cut(s)	143, 179, 245, 312, 485, 1248
BslFI	GGGAC	2 cut(s)	2317, 2426
BslI	CCNNNNNNNGG	4 cut(s)	178, 179, 947, 2597
BsmAI	GTCTC	5 cut(s)	156, 355, 414, 1162, 2530
BsmBI	CGTCTC	2 cut(s)	414, 1162
BsmFI	GGGAC	2 cut(s)	2317, 2426
BsmI	GAATGC	3 cut(s)	1383, 1549, 2164
BsnI	GGCC	5 cut(s)	407, 1436, 2098, 2470, 2625
BsoBI	CYCGRG	3 cut(s)	632, 1756, 2298
Bsp119I	TTCGAA	2 cut(s)	713, 1515
Bsp1286I	GDGCHC	6 cut(s)	16, 252, 282, 360, 1291, 1298
Bsp1720I	GCTNAGC	1 cut(s)	51
BspANI	GGCC	5 cut(s)	407, 1436, 2098, 2470, 2625
BspCNI	CTCAG	5 cut(s)	64, 570, 772, 1270, 2918
BspFNI	CGCG	2 cut(s)	333, 1050
BspLI	GGNNCC	6 cut(s)	207, 483, 867, 939, 2442, 2644
BspMAI	CTGCAG	2 cut(s)	2344, 3059
BspMI	ACCTGC	1 cut(s)	2778
BspPI	GGATC	6 cut(s)	356, 932, 945, 2241, 3029, 3169
BspQI	GCTCTTC	2 cut(s)	602, 785
BspT104I	TTCGAA	2 cut(s)	713, 1515
BspT107I	GGYRCC	3 cut(s)	205, 865, 2642
BsrDI	GCAATG	1 cut(s)	2031
BsrFI	RCCGGY	1 cut(s)	142
BsrI	ACTGG	4 cut(s)	96, 1425, 2002, 3187
BssAI	RCCGGY	1 cut(s)	142
BssECI	CCNNGG	3 cut(s)	56, 1248, 1582
BssNI	GRCGYC	5 cut(s)	71, 206, 267, 426, 530
Bst2UI	CCWGG	4 cut(s)	200, 284, 2397, 3179
Bst4CI	ACNGT	8 cut(s)	499, 1608, 1802, 1829, 2167, 2186, 2737, 2978
Bst6I	CTCTTC	5 cut(s)	27, 602, 785, 1458, 2350
BstACI	GRCGYC	5 cut(s)	71, 206, 267, 426, 530
BstBAI	YACGTR	1 cut(s)	2512
BstBI	TTCGAA	2 cut(s)	713, 1515
BstDEI	CTNAG	7 cut(s)	51, 578, 780, 1257, 2569, 2819, 2905
BstFNI	CGCG	2 cut(s)	333, 1050
BstH2I	RGCGCY	2 cut(s)	209, 3019
BstHHI	GCGC	5 cut(s)	208, 335, 520, 1050, 3018
BstMAI	GTCTC	5 cut(s)	156, 355, 414, 1162, 2530
BstNI	CCWGG	4 cut(s)	200, 284, 2397, 3179
BstNSI	RCATGY	2 cut(s)	1150, 2365
BstPAI	GACNNNNGTC	1 cut(s)	2309
BstSCI	CCNGG	6 cut(s)	178, 198, 282, 1247, 2395, 3177
BstSFI	CTRYAG	3 cut(s)	2340, 2736, 3055
BstSLI	GKGCMC	1 cut(s)	16
BstUI	CGCG	2 cut(s)	333, 1050
BstV1I	GCAGC	4 cut(s)	48, 718, 828, 1558
BstV2I	GAAGAC	3 cut(s)	122, 833, 1515
BstX2I	RGATCY	2 cut(s)	937, 2662
BstYI	RGATCY	2 cut(s)	937, 2662
BsuI	GTATCC	4 cut(s)	1589, 1977, 2097, 2544
BsuRI	GGCC	5 cut(s)	407, 1436, 2098, 2470, 2625
BtgZI	GCGATG	2 cut(s)	905, 2289
BtsI	GCAGTG	1 cut(s)	2564
BtsIMutI	CAGTG	4 cut(s)	117, 2009, 2191, 2564
BveI	ACCTGC	1 cut(s)	2778
CfoI	GCGC	5 cut(s)	208, 335, 520, 1050, 3018
Cfr10I	RCCGGY	1 cut(s)	142
Cfr13I	GGNCC	4 cut(s)	1435, 1472, 2440, 2492
CseI	GACGC	6 cut(s)	256, 415, 538, 1179, 2042, 2213
Csp6I	GTAC	4 cut(s)	777, 1803, 2448, 2643
CviQI	GTAC	4 cut(s)	777, 1803, 2448, 2643
DdeI	CTNAG	7 cut(s)	51, 578, 780, 1257, 2569, 2819, 2905
DinI	GGCGCC	1 cut(s)	207
DrdI	GACNNNNNNGTC	1 cut(s)	347
DseDI	GACNNNNNNGTC	1 cut(s)	347
EaeI	YGGCCR	1 cut(s)	2623
Eam1104I	CTCTTC	5 cut(s)	27, 602, 785, 1458, 2350
EarI	CTCTTC	5 cut(s)	27, 602, 785, 1458, 2350
Ecl136II	GAGCTC	3 cut(s)	250, 358, 1289
Eco147I	AGGCCT	2 cut(s)	407, 2470
Eco24I	GRGCYC	4 cut(s)	252, 360, 1291, 1298
Eco47I	GGWCC	3 cut(s)	1472, 2440, 2492
Eco53kI	GAGCTC	3 cut(s)	250, 358, 1289
Eco57I	CTGAAG	2 cut(s)	275, 2328
Eco88I	CYCGRG	3 cut(s)	632, 1756, 2298
EcoICRI	GAGCTC	3 cut(s)	250, 358, 1289
EcoO109I	RGGNCCY	2 cut(s)	2440, 2492
EcoRII	CCWGG	4 cut(s)	198, 282, 2395, 3177
EcoT22I	ATGCAT	2 cut(s)	1148, 3229
EcoT38I	GRGCYC	4 cut(s)	252, 360, 1291, 1298
EgeI	GGCGCC	1 cut(s)	207
EheI	GGCGCC	1 cut(s)	207
Esp3I	CGTCTC	2 cut(s)	414, 1162
FaqI	GGGAC	2 cut(s)	2317, 2426
FauI	CCCGC	2 cut(s)	1116, 2358
FauNDI	CATATG	1 cut(s)	3157
FbaI	TGATCA	2 cut(s)	669, 907
FblI	GTMKAC	1 cut(s)	2587
Fnu4HI	GCNGC	8 cut(s)	62, 126, 129, 204, 707, 842, 1316, 1547
FriOI	GRGCYC	4 cut(s)	252, 360, 1291, 1298
Fsp4HI	GCNGC	8 cut(s)	62, 126, 129, 204, 707, 842, 1316, 1547
FspBI	CTAG	6 cut(s)	417, 771, 1269, 1350, 1365, 3030
GlaI	GCGC	5 cut(s)	207, 334, 519, 1049, 3017
GluI	GCNGC	8 cut(s)	62, 126, 129, 204, 707, 842, 1316, 1547
GsaI	CCCAGC	1 cut(s)	2154
GsuI	CTGGAG	4 cut(s)	675, 1383, 2418, 3170
HaeII	RGCGCY	2 cut(s)	209, 3019
HaeIII	GGCC	5 cut(s)	407, 1436, 2098, 2470, 2625
HapII	CCGG	6 cut(s)	143, 179, 245, 312, 485, 1248
HgaI	GACGC	6 cut(s)	256, 415, 538, 1179, 2042, 2213
HhaI	GCGC	5 cut(s)	208, 335, 520, 1050, 3018
Hin1I	GRCGYC	5 cut(s)	71, 206, 267, 426, 530
Hin6I	GCGC	5 cut(s)	206, 333, 518, 1048, 3016
HinP1I	GCGC	5 cut(s)	206, 333, 518, 1048, 3016
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HindIII	AAGCTT	1 cut(s)	3149
HpaII	CCGG	6 cut(s)	143, 179, 245, 312, 485, 1248
Hpy166II	GTNNAC	4 cut(s)	307, 2588, 2816, 2949
Hpy8I	GTNNAC	4 cut(s)	307, 2588, 2816, 2949
Hpy99I	CGWCG	5 cut(s)	73, 76, 272, 395, 2058
HpyCH4III	ACNGT	8 cut(s)	499, 1608, 1802, 1829, 2167, 2186, 2737, 2978
HpyCH4IV	ACGT	5 cut(s)	71, 390, 473, 2511, 2680
HpyF3I	CTNAG	7 cut(s)	51, 578, 780, 1257, 2569, 2819, 2905
HpySE526I	ACGT	5 cut(s)	71, 390, 473, 2511, 2680
Hsp92I	GRCGYC	5 cut(s)	71, 206, 267, 426, 530
HspAI	GCGC	5 cut(s)	206, 333, 518, 1048, 3016
KasI	GGCGCC	1 cut(s)	205
KpnI	GGTACC	1 cut(s)	2646
Ksp22I	TGATCA	2 cut(s)	669, 907
LguI	GCTCTTC	2 cut(s)	602, 785
Lsp1109I	GCAGC	4 cut(s)	48, 718, 828, 1558
LweI	GCATC	8 cut(s)	192, 888, 915, 1171, 1761, 1944, 2289, 3214
MaeI	CTAG	6 cut(s)	417, 771, 1269, 1350, 1365, 3030
MaeII	ACGT	5 cut(s)	71, 390, 473, 2511, 2680
MfeI	CAATTG	1 cut(s)	2118
MflI	RGATCY	2 cut(s)	937, 2662
MhlI	GDGCHC	6 cut(s)	16, 252, 282, 360, 1291, 1298
MlsI	TGGCCA	1 cut(s)	2625
MluNI	TGGCCA	1 cut(s)	2625
Mly113I	GGCGCC	1 cut(s)	206
MlyI	GAGTC	5 cut(s)	281, 1083, 1249, 2513, 2904
MmeI	TCCRAC	4 cut(s)	489, 2036, 2677, 2708
Mox20I	TGGCCA	1 cut(s)	2625
Mph1103I	ATGCAT	2 cut(s)	1148, 3229
MroXI	GAANNNNTTC	1 cut(s)	2267
MscI	TGGCCA	1 cut(s)	2625
MseI	TTAA	2 cut(s)	387, 1569
MslI	CAYNNNNRTG	1 cut(s)	2366
Msp20I	TGGCCA	1 cut(s)	2625
MspA1I	CMGCKG	1 cut(s)	646
MspI	CCGG	6 cut(s)	143, 179, 245, 312, 485, 1248
MspR9I	CCNGG	6 cut(s)	180, 200, 284, 1249, 2397, 3179
MunI	CAATTG	1 cut(s)	2118
Mva1269I	GAATGC	3 cut(s)	1383, 1549, 2164
MvaI	CCWGG	4 cut(s)	200, 284, 2397, 3179
MvnI	CGCG	2 cut(s)	333, 1050
NarI	GGCGCC	1 cut(s)	206
NciI	CCSGG	2 cut(s)	180, 1249
NdeI	CATATG	1 cut(s)	3157
NlaIV	GGNNCC	6 cut(s)	207, 483, 867, 939, 2442, 2644
NmeAIII	GCCGAG	3 cut(s)	37, 558, 3054
NsiI	ATGCAT	2 cut(s)	1148, 3229
NspI	RCATGY	2 cut(s)	1150, 2365
NspV	TTCGAA	2 cut(s)	713, 1515
PaeI	GCATGC	1 cut(s)	2365
PaeR7I	CTCGAG	2 cut(s)	1756, 2298
PceI	AGGCCT	2 cut(s)	407, 2470
PciSI	GCTCTTC	2 cut(s)	602, 785
PcsI	WCGNNNNNNNCGW	6 cut(s)	128, 399, 429, 1723, 1833, 2581
PctI	GAATGC	3 cut(s)	1383, 1549, 2164
PdmI	GAANNNNTTC	1 cut(s)	2267
PfeI	GAWTC	6 cut(s)	315, 324, 369, 650, 697, 2874
PflFI	GACNNNGTC	1 cut(s)	425
PflMI	CCANNNNNTGG	1 cut(s)	2597
PfoI	TCCNGGA	1 cut(s)	3177
PkrI	GCNGC	8 cut(s)	63, 127, 130, 205, 708, 843, 1317, 1548
PleI	GAGTC	5 cut(s)	281, 1082, 1249, 2512, 2904
PluTI	GGCGCC	1 cut(s)	209
PpsI	GAGTC	5 cut(s)	281, 1082, 1249, 2512, 2904
Ppu21I	YACGTR	1 cut(s)	2512
PpuMI	RGGWCCY	2 cut(s)	2440, 2492
PshAI	GACNNNNGTC	1 cut(s)	2309
PsiI	TTATAA	1 cut(s)	2292
Psp124BI	GAGCTC	3 cut(s)	252, 360, 1291
Psp5II	RGGWCCY	2 cut(s)	2440, 2492
Psp6I	CCWGG	4 cut(s)	198, 282, 2395, 3177
PspFI	CCCAGC	1 cut(s)	2150
PspGI	CCWGG	4 cut(s)	198, 282, 2395, 3177
PspN4I	GGNNCC	6 cut(s)	207, 483, 867, 939, 2442, 2644
PspPI	GGNCC	4 cut(s)	1435, 1472, 2440, 2492
PspPPI	RGGWCCY	2 cut(s)	2440, 2492
PspXI	VCTCGAGB	1 cut(s)	2298
PstI	CTGCAG	2 cut(s)	2344, 3059
PsuI	RGATCY	2 cut(s)	937, 2662
PsyI	GACNNNGTC	1 cut(s)	425
RsaI	GTAC	4 cut(s)	778, 1804, 2449, 2644
RsaNI	GTAC	4 cut(s)	777, 1803, 2448, 2643
RseI	CAYNNNNRTG	1 cut(s)	2366
SacI	GAGCTC	3 cut(s)	252, 360, 1291
SapI	GCTCTTC	2 cut(s)	602, 785
SaqAI	TTAA	2 cut(s)	387, 1569
SatI	GCNGC	8 cut(s)	62, 126, 129, 204, 707, 842, 1316, 1547
Sau96I	GGNCC	4 cut(s)	1435, 1472, 2440, 2492
ScaI	AGTACT	1 cut(s)	778
SchI	GAGTC	5 cut(s)	281, 1083, 1249, 2513, 2904
ScrFI	CCNGG	6 cut(s)	180, 200, 284, 1249, 2397, 3179
SduI	GDGCHC	6 cut(s)	16, 252, 282, 360, 1291, 1298
SfaNI	GCATC	8 cut(s)	192, 888, 915, 1171, 1761, 1944, 2289, 3214
SfcI	CTRYAG	3 cut(s)	2340, 2736, 3055
SfoI	GGCGCC	1 cut(s)	207
Sfr274I	CTCGAG	2 cut(s)	1756, 2298
SfuI	TTCGAA	2 cut(s)	713, 1515
SinI	GGWCC	3 cut(s)	1472, 2440, 2492
SlaI	CTCGAG	2 cut(s)	1756, 2298
SmiMI	CAYNNNNRTG	1 cut(s)	2366
SmlI	CTYRAG	3 cut(s)	1756, 2298, 2496
SmoI	CTYRAG	3 cut(s)	1756, 2298, 2496
SpeI	ACTAGT	1 cut(s)	770
SphI	GCATGC	1 cut(s)	2365
SseBI	AGGCCT	2 cut(s)	407, 2470
SspDI	GGCGCC	1 cut(s)	205
SspI	AATATT	2 cut(s)	2035, 3199
SspMI	CTAG	6 cut(s)	417, 771, 1269, 1350, 1365, 3030
SstI	GAGCTC	3 cut(s)	252, 360, 1291
StuI	AGGCCT	2 cut(s)	407, 2470
StyD4I	CCNGG	6 cut(s)	178, 198, 282, 1247, 2395, 3177
TaaI	ACNGT	8 cut(s)	499, 1608, 1802, 1829, 2167, 2186, 2737, 2978
TaiI	ACGT	5 cut(s)	74, 393, 476, 2514, 2683
TatI	WGTACW	2 cut(s)	776, 2447
TauI	GCSGC	4 cut(s)	128, 131, 206, 1318
TfiI	GAWTC	6 cut(s)	315, 324, 369, 650, 697, 2874
Tru1I	TTAA	2 cut(s)	387, 1569
Tru9I	TTAA	2 cut(s)	387, 1569
TscAI	CASTG	4 cut(s)	117, 2009, 2191, 2564
TseI	GCWGC	4 cut(s)	61, 706, 841, 1546
TspGWI	ACGGA	3 cut(s)	400, 1229, 1953
TspRI	CASTG	4 cut(s)	117, 2009, 2191, 2564
Tth111I	GACNNNGTC	1 cut(s)	425
Van91I	CCANNNNNTGG	1 cut(s)	2597
VpaK11BI	GGWCC	3 cut(s)	1472, 2440, 2492
XapI	RAATTY	5 cut(s)	6, 230, 1129, 2564, 2606
XceI	RCATGY	2 cut(s)	1150, 2365
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2962
XhoI	CTCGAG	2 cut(s)	1756, 2298
XmiI	GTMKAC	1 cut(s)	2587
XmnI	GAANNNNTTC	1 cut(s)	2267
XspI	CTAG	6 cut(s)	417, 771, 1269, 1350, 1365, 3030
ZraI	GACGTC	1 cut(s)	72
ZrmI	AGTACT	1 cut(s)	778
Zsp2I	ATGCAT	2 cut(s)	1148, 3229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.