Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002970

Physical Location & Seq

Genomic Coordinates Reverse (-)

11238958 .. 11247122

Gene Structure 8165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0068500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3084 bp

ATGAGTCCACCTGCTGTGCTGAACATGGAAGATACGAAGCCGGAGGTCTCTGCATCCAACAATTCGAATTCGGGAACTGCAGATTTGGACCCTGTTAAAGCTCGATTTACTGATTTGTGCAAGAATGGATTGTCGTTGGACGAGAACACGCTCACGCAAGCTATTAAGCTGCTGATAGAAACGAAACATGTTCTAATATCAAATTTATCAGCTATCGGAAATGGAACGCCTGAAGAAGCAGAACGGTTCTGGTTTTCGTTTGTTTTGTTCTCGGTGAAAACATTGAGTGAGAAGAGTTCAGATAATTCACAAAAGGGGTCTGATGATAATGGATTCTCTCTCATCCAAATTTTGAGAGCTGCTAAACTGAACATTGTGGATTTCTTTAAGGAGCTTCCACAGTTTATTGTTAAGGCCGGCCCAATTTTAAGTAATCTGTATGGTGTAGATTGGGAGAGCAAACTTGAGGCAAAAGAGTTGCAGGCCAATTTTCTGTACTTGAGCCTTTTAAGCAAGTACTTCAAAAAAGCATACCGGGAATTCTTCTTGACAAGTGATGCAACTGTTGATAAGAAGTCGGCCATTACCAATGGAGCTGGCTATGTGTCAGAGTATCATAGATTTGGATGGCTGCTGTTTTTGGCCCTTCGGGTACATGTATTTGGGCGAGTTAAAGACCTGGTGACATGCACAAACGGCTTGGTTTCCATATTGGCAATTTTAATTATTCACGTCCCTGTTCGCTTCAGAAACTTTAGAATCCATGATTCACCGCGTTTTGTGAGGAAAGGCAACAAAGGTGTGGACCTGCTTGCATCACTTTGCAACACTTATGACACCTCAGAAGAGGAGCTGAGAAAAACAATGGAAAAGGCTAATACATTGATATCAGATCTTTTGAAGAAGAAGCCTTGTTTGGCATCTGAGTGTAAAAATGAAAATCTAAAGAATATTGATACAGATGGTTTGACCTATTTTGAAGGACTTCTGGATGAACCTTCTTTGTCATCCAGTTTAGATATTCTAGAAAAAGATCATGATGATGCAATTCGGAATAAGGGTGAACTGGATGAGAGAGTATTTATAAATGAGGAGGACAGCTTACTTGGTTCAGGGAGCTTGTCAGGAGGGTCCTTGAATTTATCTGGTGTGAAGAGGAAATTTGATTCAGTGGCCTCCCCAACAAAGACAATTACAAGTCCACTCTCTCCCCATCGCTCTCCAGCTTCGCATGTTAATGGTGGTGTTAATTCAAAGATGGCAGCTACACCTGTGAGCACTGCAATGACAACTGCAAAGTGGCTTAGGACCTTTATTTCCCCACTTCCATCAAAACCCTCACCCGAGCTCGAGGGTTTTCTGGCATCATGTGATAGGAACGTTAGTAATGATGTGATACGCAGGGCGCAAATAATACTTGAGGCCATATTTCCAAGTAGTGCTTTGGGGGAGCGATGTGTAACTGGTAGTCTGCAAAGTGCTAACCTCATGGACAATGTGTGGGCAGAACAACGAAGACTGGAAGCACTCAAGCTTTATTATAGAGTTTTGGAAGCAATGTGTAGGGCAGAGGCTCAAGTTCTGCATGCTACTAATTTGACCTCTTTATTAACAAATGAGAGGTTCCATAGATGCATGCTAGCATGCTCTGCTGAGTTAGTCCTGGCAACACATAAGACGGTCACAATGTTGTTTCCTGCCGTACTAGAAAGGACAGGCATTACAGCTTTTGATCTTAGCAAGGTGATAGAGAGCTTCATTAGACATGAAGAATCTCTACCAAGAGAATTGAGACGACATCTAAATTCATTGGAAGAACGACTTTTGGAGAGCATGGTATGGGAGAAGGGTTCCTCAATGTACAATTCTTTGACAGTTGCTAGGCCTGCCTTCTCGGCTGAAATCAACCGTCTCGGGTTATTAGCAGAACCAATGCCATCTTTGGATGCAATAGCTTTGCATATCAACTTCTCTTGTGGAGGGTTGCCTCCAGTAGCTTCTTTACAGAAGCATGAGACTTCCCCAGGTCAGAATGGAGATCTCAGGTCTCCGAAGAGACCCTGCACAGAATATAGGGGTGTCTTACTAGAGCGAAATTCCTTTACTTCTCCAGTGAAGGATCGTCTCCTGGCCTTAAGTAACCTTAAATCAAAGCTGCCACCGCCACCTCTACAATCTGCTTTTGCAAGTCCAACACGACCAAATCCAGGAGGTGGAGGGGAAACATGTGCAGAAACTGGAGTTAGTATTTTCTTTAATAAGATCATCAAGCTGGCTGCTGTAAGAATTAATGGTATGGTCGAAAGGTTGCAATTGTCTCAGCAAATCAGGGAGAATGTTTATCGCCTCTTCCAACAAATACTTGTTCAGCGGACATCTCTCTTTTTTAACCGCCATATTGACCAAATTATCCTTTGTTGTTTTTACGGGGTTGCCAAGATTTCTCAACTAAGTCTTACATTTAGGGAAATCATACACAACTACAGGAAGCAACCACAATGCAAACCACAAGTTTTTCGAAGTGTCTTTGTTGACTGGTCATCAGCTAGACGCAATGGGCGGCCTGGACAGGAACACGTAGATATCATTAGATTTTACAATGAAGTATTCATTCCTTCTGTCAAGACCCTGCTTGTTGAGCTTGGGCCAGCTGTTACAACTACAAGAGCCAATGTAGTTCCTGAAGCTAACAACAACAATGATGCTCAATGTCCAGGATCACCTAAAGTATCCACCTTTCCAAGTCTCCCTGATATGTCTCCAAAGAAAGTATCTGCAGCACACAATGTATATGTATCTCCATTGCGATCATCAAAGATGGATGCCTTAATCTCACATAGCTCAAAGAGCTATTATGCTTGTGTTGGGGAGAGTACTCATGCGTATCAGAGCCCTTCAAAAGATCTGACAGCCATTAACAACCGCTTGAATGGCACACGAAAACGCACACTCGACTTTGATAATGTGGATGTAGGGGTTGGTTTGGTTAGTGATTCTATGGTGGCCAATAGCCTGTACCTTCAAAATGGGAGTTGTGCATCCTCATCGGGTGGACCATTGAAAACCGAGCAACCTGACTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

1027

Amino Acids

113.65

Weight (kDa)

8.69

Isoelectric Point (pI)

48.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3452	PF11934	106 - 244	5.3e-34	Domain of unknown function (DUF3452)
RB_A	PF01858	423 - 624	2.5e-64	Retinoblastoma-associated protein A domain
RB_B	PF01857	748 - 875	2.2e-43	Retinoblastoma-associated protein B domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04990 AT1G04990 AT1G04990 AT1G04990 AT1G04990 AT1G04990 AT2G32930 AT2G32930 AT2G32930
fragaria_vesca	FvH4_3g13621 FvH4_6g42010 FvH4_6g42010
malus_domestica	MD03G1135600.v1.1 MD03G1279200.v1.1 MD03G1279800.v1.1 MD05G1053000.v1.1 MD06G1100700.v1.1 MD09G1115400.v1.1 MD10G1110500.v1.1 MD17G1107000.v1.1
prunus_persica	Prupe.3G209200_v2.0.a1 Prupe.3G209200_v2.0.a1
pyrus_communis	pycom09g03970 pycom09g03980 pycom17g09960
rosa_chinensis	RchiOBHm_Chr2g0157941
rosa_laevigata	RLG00000021036
rosa_multiflora	Rmu_sc0011758.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091850
rosa_rugosa	Rorug01G0068500 Rorug02G0304500.1 Rorug02G0464400
rosa_samantha	Rh2AG529800 Rh2BG544500 Rh2CG514200 Rh2DG552800 Rh5BG160500
rosa_wichuraiana	Rw2G043860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1085
AarI	CACCTGC	1 cut(s)	19
Acc36I	ACCTGC	2 cut(s)	19, 816
AccB7I	CCANNNNNTGG	1 cut(s)	2213
AccII	CGCG	1 cut(s)	775
AciI	CCGC	6 cut(s)	773, 2162, 2371, 2392, 2560, 2923
AclI	AACGTT	1 cut(s)	1380
AclWI	GGATC	2 cut(s)	2127, 2725
AcoI	YGGCCR	2 cut(s)	579, 3003
AcsI	RAATTY	8 cut(s)	67, 202, 348, 539, 1138, 1160, 1804, 2095
AcuI	CTGAAG	3 cut(s)	252, 730, 2703
AfaI	GTAC	7 cut(s)	497, 518, 654, 1704, 1862, 2875, 3017
AfiI	CCNNNNNNNGG	2 cut(s)	2207, 2213
AflII	CTTAAG	1 cut(s)	2134
AflIII	ACRYGT	4 cut(s)	187, 655, 2225, 2575
AgsI	TTSAA	9 cut(s)	523, 901, 980, 1138, 1254, 2898, 2929, 3023, 3061
AjiI	CACGTC	1 cut(s)	733
AjnI	CCWGG	7 cut(s)	678, 1662, 2023, 2127, 2206, 2563, 2713
AjuI	GAANNNNNNNTTGG	2 cut(s)	899, 931
Alw21I	GWGCWC	2 cut(s)	1280, 1350
AlwI	GGATC	2 cut(s)	2127, 2725
AlwNI	CAGNNNCTG	1 cut(s)	2237
Ama87I	CYCGRG	3 cut(s)	1343, 1349, 1913
ApeKI	GCWGC	7 cut(s)	169, 359, 631, 1262, 2155, 2276, 2777
ApoI	RAATTY	8 cut(s)	67, 202, 348, 539, 1138, 1160, 1804, 2095
AseI	ATTAAT	1 cut(s)	2289
Asp700I	GAANNNNTTC	1 cut(s)	984
AspLEI	GCGC	1 cut(s)	1408
AspS9I	GGNCC	8 cut(s)	88, 419, 643, 805, 1131, 1308, 2645, 3053
AsuC2I	CCSGG	1 cut(s)	536
AsuHPI	GGTGA	7 cut(s)	286, 694, 762, 1073, 1332, 1756, 2712
AsuII	TTCGAA	2 cut(s)	65, 2518
AsuNHI	GCTAGC	1 cut(s)	1639
AvaI	CYCGRG	3 cut(s)	1343, 1349, 1913
AvaII	GGWCC	5 cut(s)	88, 805, 1131, 1308, 3053
BalI	TGGCCA	1 cut(s)	3005
BanII	GRGCYC	2 cut(s)	1350, 2894
BarI	GAAGNNNNNNTAC	2 cut(s)	1761, 1793
BbsI	GAAGAC	1 cut(s)	1522
Bbv12I	GWGCWC	2 cut(s)	1280, 1350
BbvI	GCAGC	7 cut(s)	156, 346, 618, 1274, 2142, 2263, 2789
BccI	CCATC	7 cut(s)	621, 956, 1221, 1252, 1336, 1945, 2812
BceAI	ACGGC	2 cut(s)	712, 1685
BcgI	CGANNNNNNTGC	2 cut(s)	3027, 3061
BciT130I	CCWGG	7 cut(s)	680, 1664, 2025, 2129, 2208, 2565, 2715
BciVI	GTATCC	1 cut(s)	2740
BcnI	CCSGG	1 cut(s)	536
BfaI	CTAG	6 cut(s)	1025, 1640, 1706, 1881, 2087, 2547
BfmI	CTRYAG	3 cut(s)	78, 2482, 2775
BfrI	CTTAAG	1 cut(s)	2134
BfuAI	ACCTGC	2 cut(s)	19, 816
BfuI	GTATCC	1 cut(s)	2740
BglI	GCCNNNNNGGC	1 cut(s)	1895
BglII	AGATCT	3 cut(s)	892, 2038, 2902
BisI	GCNGC	8 cut(s)	170, 360, 632, 1263, 2156, 2277, 2561, 2778
BlsI	GCNGC	8 cut(s)	171, 361, 633, 1264, 2157, 2278, 2562, 2779
BmcAI	AGTACT	2 cut(s)	518, 2875
Bme1390I	CCNGG	8 cut(s)	536, 680, 1664, 2025, 2129, 2208, 2565, 2715
Bme18I	GGWCC	5 cut(s)	88, 805, 1131, 1308, 3053
BmeT110I	CYCGRG	3 cut(s)	1343, 1349, 1913
BmgBI	CACGTC	1 cut(s)	733
BmgT120I	GGNCC	8 cut(s)	88, 419, 643, 805, 1131, 1308, 2645, 3053
BmiI	GGNNCC	4 cut(s)	90, 1132, 1625, 1852
BmrFI	CCNGG	8 cut(s)	536, 680, 1664, 2025, 2129, 2208, 2565, 2715
BmtI	GCTAGC	1 cut(s)	1643
BpiI	GAAGAC	1 cut(s)	1522
BpmI	CTGGAG	4 cut(s)	1206, 1974, 2094, 2259
Bpu10I	CCTNAGC	1 cut(s)	1304
Bpu14I	TTCGAA	2 cut(s)	65, 2518
BpuEI	CTTGAG	5 cut(s)	485, 520, 1439, 1514, 1560
BpuMI	CCSGG	1 cut(s)	536
BsaAI	YACGTR	1 cut(s)	2578
BsaI	GGTCTC	3 cut(s)	52, 2050, 2052
BsaJI	CCNNGG	1 cut(s)	2023
Bsc4I	CCNNNNNNNGG	2 cut(s)	2207, 2213
Bse118I	RCCGGY	1 cut(s)	416
Bse1I	ACTGG	8 cut(s)	1011, 1071, 1468, 1524, 1991, 2111, 2242, 2540
Bse3DI	GCAATG	4 cut(s)	1290, 1563, 2560, 2801
BseBI	CCWGG	7 cut(s)	680, 1664, 2025, 2129, 2208, 2565, 2715
BseDI	CCNNGG	1 cut(s)	2023
BseLI	CCNNNNNNNGG	2 cut(s)	2207, 2213
BseMI	GCAATG	4 cut(s)	1290, 1563, 2560, 2801
BseMII	CTCAG	6 cut(s)	845, 855, 915, 1644, 2056, 2333
BseNI	ACTGG	8 cut(s)	1011, 1071, 1468, 1524, 1991, 2111, 2242, 2540
BseRI	GAGGAG	2 cut(s)	863, 1106
BseXI	GCAGC	7 cut(s)	156, 346, 618, 1274, 2142, 2263, 2789
BsgI	GTGCAG	2 cut(s)	2047, 2250
Bsh1236I	CGCG	1 cut(s)	775
BsiHKAI	GWGCWC	2 cut(s)	1280, 1350
BsiHKCI	CYCGRG	3 cut(s)	1343, 1349, 1913
BsiSI	CCGG	3 cut(s)	41, 417, 535
BslFI	GGGAC	1 cut(s)	719
BslI	CCNNNNNNNGG	2 cut(s)	2207, 2213
BsmBI	CGTCTC	3 cut(s)	1786, 1916, 2129
BsmFI	GGGAC	1 cut(s)	719
Bso31I	GGTCTC	3 cut(s)	52, 2050, 2052
BsoBI	CYCGRG	3 cut(s)	1343, 1349, 1913
Bsp119I	TTCGAA	2 cut(s)	65, 2518
Bsp1286I	GDGCHC	3 cut(s)	1280, 1350, 2894
Bsp1407I	TGTACA	1 cut(s)	1860
Bsp143I	GATC	9 cut(s)	892, 1033, 1732, 2038, 2119, 2262, 2717, 2807, 2902
BspACI	CCGC	6 cut(s)	773, 2162, 2371, 2392, 2560, 2923
BspCNI	CTCAG	6 cut(s)	846, 854, 916, 1645, 2055, 2332
BspFNI	CGCG	1 cut(s)	775
BspHI	TCATGA	1 cut(s)	1036
BspLI	GGNNCC	4 cut(s)	90, 1132, 1625, 1852
BspMAI	CTGCAG	2 cut(s)	82, 2779
BspMI	ACCTGC	2 cut(s)	19, 816
BspOI	GCTAGC	1 cut(s)	1643
BspPI	GGATC	2 cut(s)	2127, 2725
BspT104I	TTCGAA	2 cut(s)	65, 2518
BspTI	CTTAAG	1 cut(s)	2134
BspTNI	GGTCTC	3 cut(s)	52, 2050, 2052
BsrDI	GCAATG	4 cut(s)	1290, 1563, 2560, 2801
BsrFI	RCCGGY	1 cut(s)	416
BsrGI	TGTACA	1 cut(s)	1860
BsrI	ACTGG	8 cut(s)	1011, 1071, 1468, 1524, 1991, 2111, 2242, 2540
BssAI	RCCGGY	1 cut(s)	416
BssECI	CCNNGG	1 cut(s)	2023
BssMI	GATC	9 cut(s)	892, 1033, 1732, 2038, 2119, 2262, 2717, 2807, 2902
Bst2UI	CCWGG	7 cut(s)	680, 1664, 2025, 2129, 2208, 2565, 2715
Bst4CI	ACNGT	6 cut(s)	246, 402, 565, 1681, 1876, 1910
Bst6I	CTCTTC	5 cut(s)	287, 840, 1148, 2048, 2354
BstAFI	CTTAAG	1 cut(s)	2134
BstAPI	GCANNNNNTGC	1 cut(s)	1649
BstAUI	TGTACA	1 cut(s)	1860
BstBAI	YACGTR	1 cut(s)	2578
BstBI	TTCGAA	2 cut(s)	65, 2518
BstDEI	CTNAG	9 cut(s)	841, 854, 924, 1304, 1653, 1736, 2042, 2319, 2450
BstFNI	CGCG	1 cut(s)	775
BstHHI	GCGC	1 cut(s)	1408
BstKTI	GATC	9 cut(s)	895, 1036, 1735, 2041, 2122, 2265, 2720, 2810, 2905
BstMBI	GATC	9 cut(s)	892, 1033, 1732, 2038, 2119, 2262, 2717, 2807, 2902
BstMWI	GCNNNNNNNGC	9 cut(s)	510, 696, 1649, 1886, 1895, 2161, 2638, 2847, 2931
BstNI	CCWGG	7 cut(s)	680, 1664, 2025, 2129, 2208, 2565, 2715
BstNSI	RCATGY	8 cut(s)	191, 659, 690, 1235, 1589, 1639, 1647, 2229
BstSCI	CCNGG	8 cut(s)	534, 678, 1662, 2023, 2127, 2206, 2563, 2713
BstSFI	CTRYAG	3 cut(s)	78, 2482, 2775
BstUI	CGCG	1 cut(s)	775
BstV1I	GCAGC	7 cut(s)	156, 346, 618, 1274, 2142, 2263, 2789
BstV2I	GAAGAC	1 cut(s)	1522
BstX2I	RGATCY	3 cut(s)	892, 2038, 2902
BstYI	RGATCY	3 cut(s)	892, 2038, 2902
BsuI	GTATCC	1 cut(s)	2740
BtgZI	GCGATG	2 cut(s)	1199, 1468
BtrI	CACGTC	1 cut(s)	733
BtsI	GCAGTG	1 cut(s)	1278
BtsIMutI	CAGTG	3 cut(s)	1176, 1278, 2118
BveI	ACCTGC	2 cut(s)	19, 816
CaiI	CAGNNNCTG	1 cut(s)	2237
CciI	TCATGA	1 cut(s)	1036
CfoI	GCGC	1 cut(s)	1408
Cfr10I	RCCGGY	1 cut(s)	416
Cfr13I	GGNCC	8 cut(s)	88, 419, 643, 805, 1131, 1308, 2645, 3053
CseI	GACGC	1 cut(s)	2559
CsiI	ACCWGGT	1 cut(s)	678
Csp6I	GTAC	7 cut(s)	496, 517, 653, 1703, 1861, 2874, 3016
CviQI	GTAC	7 cut(s)	496, 517, 653, 1703, 1861, 2874, 3016
DdeI	CTNAG	9 cut(s)	841, 854, 924, 1304, 1653, 1736, 2042, 2319, 2450
DpnI	GATC	9 cut(s)	894, 1035, 1734, 2040, 2121, 2264, 2719, 2809, 2904
DpnII	GATC	9 cut(s)	892, 1033, 1732, 2038, 2119, 2262, 2717, 2807, 2902
EaeI	YGGCCR	2 cut(s)	579, 3003
Eam1104I	CTCTTC	5 cut(s)	287, 840, 1148, 2048, 2354
EarI	CTCTTC	5 cut(s)	287, 840, 1148, 2048, 2354
Ecl136II	GAGCTC	1 cut(s)	1348
Eco147I	AGGCCT	1 cut(s)	1885
Eco24I	GRGCYC	2 cut(s)	1350, 2894
Eco31I	GGTCTC	3 cut(s)	52, 2050, 2052
Eco32I	GATATC	2 cut(s)	888, 2584
Eco47I	GGWCC	5 cut(s)	88, 805, 1131, 1308, 3053
Eco53kI	GAGCTC	1 cut(s)	1348
Eco57I	CTGAAG	3 cut(s)	252, 730, 2703
Eco88I	CYCGRG	3 cut(s)	1343, 1349, 1913
EcoICRI	GAGCTC	1 cut(s)	1348
EcoO109I	RGGNCCY	2 cut(s)	1131, 1308
EcoRI	GAATTC	2 cut(s)	67, 539
EcoRII	CCWGG	7 cut(s)	678, 1662, 2023, 2127, 2206, 2563, 2713
EcoRV	GATATC	2 cut(s)	888, 2584
EcoT22I	ATGCAT	1 cut(s)	1637
EcoT38I	GRGCYC	2 cut(s)	1350, 2894
Esp3I	CGTCTC	3 cut(s)	1786, 1916, 2129
FalI	AAGNNNNNCTT	4 cut(s)	1426, 1458, 1806, 1838
FaqI	GGGAC	1 cut(s)	719
Fnu4HI	GCNGC	8 cut(s)	170, 360, 632, 1263, 2156, 2277, 2561, 2778
FriOI	GRGCYC	2 cut(s)	1350, 2894
FseI	GGCCGGCC	1 cut(s)	420
Fsp4HI	GCNGC	8 cut(s)	170, 360, 632, 1263, 2156, 2277, 2561, 2778
FspBI	CTAG	6 cut(s)	1025, 1640, 1706, 1881, 2087, 2547
GlaI	GCGC	1 cut(s)	1407
GluI	GCNGC	8 cut(s)	170, 360, 632, 1263, 2156, 2277, 2561, 2778
GsuI	CTGGAG	4 cut(s)	1206, 1974, 2094, 2259
HapII	CCGG	3 cut(s)	41, 417, 535
HgaI	GACGC	1 cut(s)	2559
HhaI	GCGC	1 cut(s)	1408
Hin6I	GCGC	1 cut(s)	1406
HinP1I	GCGC	1 cut(s)	1406
HincII	GTYRAC	1 cut(s)	2533
HindII	GTYRAC	1 cut(s)	2533
HindIII	AAGCTT	1 cut(s)	1532
HinfI	GANTC	7 cut(s)	4, 333, 759, 767, 1166, 1772, 2993
HpaII	CCGG	3 cut(s)	41, 417, 535
HphI	GGTGA	7 cut(s)	286, 694, 762, 1073, 1332, 1756, 2712
Hpy166II	GTNNAC	6 cut(s)	8, 805, 1064, 1202, 2533, 3053
Hpy188III	TCNNGA	8 cut(s)	72, 547, 989, 1025, 1037, 1125, 2623, 2681
Hpy8I	GTNNAC	6 cut(s)	8, 805, 1064, 1202, 2533, 3053
HpyAV	CCTTC	9 cut(s)	656, 974, 1008, 1840, 1900, 2110, 2625, 2904, 3029
HpyCH4III	ACNGT	6 cut(s)	246, 402, 565, 1681, 1876, 1910
HpyCH4IV	ACGT	3 cut(s)	732, 1380, 2577
HpyF10VI	GCNNNNNNNGC	9 cut(s)	510, 696, 1649, 1886, 1895, 2161, 2638, 2847, 2931
HpyF3I	CTNAG	9 cut(s)	841, 854, 924, 1304, 1653, 1736, 2042, 2319, 2450
HpySE526I	ACGT	3 cut(s)	732, 1380, 2577
HspAI	GCGC	1 cut(s)	1406
KroI	GCCGGC	1 cut(s)	416
KroNI	GCCGGC	1 cut(s)	418
Kzo9I	GATC	9 cut(s)	892, 1033, 1732, 2038, 2119, 2262, 2717, 2807, 2902
LmnI	GCTCC	5 cut(s)	391, 593, 850, 1116, 1450
Lsp1109I	GCAGC	7 cut(s)	156, 346, 618, 1274, 2142, 2263, 2789
MabI	ACCWGGT	1 cut(s)	678
MaeI	CTAG	6 cut(s)	1025, 1640, 1706, 1881, 2087, 2547
MaeII	ACGT	3 cut(s)	732, 1380, 2577
MaeIII	GTNAC	5 cut(s)	682, 1459, 1681, 2138, 2653
MalI	GATC	9 cut(s)	894, 1035, 1734, 2040, 2121, 2264, 2719, 2809, 2904
MboI	GATC	9 cut(s)	892, 1033, 1732, 2038, 2119, 2262, 2717, 2807, 2902
MfeI	CAATTG	1 cut(s)	2312
MflI	RGATCY	3 cut(s)	892, 2038, 2902
MhlI	GDGCHC	3 cut(s)	1280, 1350, 2894
MlsI	TGGCCA	1 cut(s)	3005
MluNI	TGGCCA	1 cut(s)	3005
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	4 cut(s)	81, 117, 2216, 2377
Mox20I	TGGCCA	1 cut(s)	3005
Mph1103I	ATGCAT	1 cut(s)	1637
MroNI	GCCGGC	1 cut(s)	416
MroXI	GAANNNNTTC	1 cut(s)	984
MscI	TGGCCA	1 cut(s)	3005
MslI	CAYNNNNRTG	4 cut(s)	925, 1041, 1236, 1283
Msp20I	TGGCCA	1 cut(s)	3005
MspA1I	CMGCKG	2 cut(s)	2371, 2651
MspCI	CTTAAG	1 cut(s)	2134
MspI	CCGG	3 cut(s)	41, 417, 535
MspR9I	CCNGG	8 cut(s)	536, 680, 1664, 2025, 2129, 2208, 2565, 2715
MunI	CAATTG	1 cut(s)	2312
MvaI	CCWGG	7 cut(s)	680, 1664, 2025, 2129, 2208, 2565, 2715
MvnI	CGCG	1 cut(s)	775
MwoI	GCNNNNNNNGC	9 cut(s)	510, 696, 1649, 1886, 1895, 2161, 2638, 2847, 2931
NaeI	GCCGGC	1 cut(s)	418
NciI	CCSGG	1 cut(s)	536
NdeII	GATC	9 cut(s)	892, 1033, 1732, 2038, 2119, 2262, 2717, 2807, 2902
NgoMIV	GCCGGC	1 cut(s)	416
NheI	GCTAGC	1 cut(s)	1639
NlaIV	GGNNCC	4 cut(s)	90, 1132, 1625, 1852
NmeAIII	GCCGAG	1 cut(s)	1874
NmuCI	GTSAC	2 cut(s)	682, 1681
NsiI	ATGCAT	1 cut(s)	1637
NspI	RCATGY	8 cut(s)	191, 659, 690, 1235, 1589, 1639, 1647, 2229
NspV	TTCGAA	2 cut(s)	65, 2518
PaeI	GCATGC	3 cut(s)	1589, 1639, 1647
PaeR7I	CTCGAG	1 cut(s)	1349
PagI	TCATGA	1 cut(s)	1036
PaqCI	CACCTGC	1 cut(s)	19
PceI	AGGCCT	1 cut(s)	1885
PciI	ACATGT	3 cut(s)	187, 655, 2225
PdiI	GCCGGC	1 cut(s)	418
PdmI	GAANNNNTTC	1 cut(s)	984
PfeI	GAWTC	6 cut(s)	333, 759, 767, 1166, 1772, 2993
PflMI	CCANNNNNTGG	1 cut(s)	2213
PfoI	TCCNGGA	2 cut(s)	2206, 2713
PkrI	GCNGC	8 cut(s)	171, 361, 633, 1264, 2157, 2278, 2562, 2779
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
Ppu21I	YACGTR	1 cut(s)	2578
PpuMI	RGGWCCY	2 cut(s)	1131, 1308
PscI	ACATGT	3 cut(s)	187, 655, 2225
PshBI	ATTAAT	1 cut(s)	2289
PsiI	TTATAA	1 cut(s)	1085
Psp124BI	GAGCTC	1 cut(s)	1350
Psp1406I	AACGTT	1 cut(s)	1380
Psp5II	RGGWCCY	2 cut(s)	1131, 1308
Psp6I	CCWGG	7 cut(s)	678, 1662, 2023, 2127, 2206, 2563, 2713
PspGI	CCWGG	7 cut(s)	678, 1662, 2023, 2127, 2206, 2563, 2713
PspN4I	GGNNCC	4 cut(s)	90, 1132, 1625, 1852
PspPI	GGNCC	8 cut(s)	88, 419, 643, 805, 1131, 1308, 2645, 3053
PspPPI	RGGWCCY	2 cut(s)	1131, 1308
PspXI	VCTCGAGB	1 cut(s)	1349
PstI	CTGCAG	2 cut(s)	82, 2779
PstNI	CAGNNNCTG	1 cut(s)	2237
PsuI	RGATCY	3 cut(s)	892, 2038, 2902
PvuII	CAGCTG	1 cut(s)	2651
RigI	GGCCGGCC	1 cut(s)	420
RsaI	GTAC	7 cut(s)	497, 518, 654, 1704, 1862, 2875, 3017
RsaNI	GTAC	7 cut(s)	496, 517, 653, 1703, 1861, 2874, 3016
RseI	CAYNNNNRTG	4 cut(s)	925, 1041, 1236, 1283
SacI	GAGCTC	1 cut(s)	1350
SatI	GCNGC	8 cut(s)	170, 360, 632, 1263, 2156, 2277, 2561, 2778
Sau3AI	GATC	9 cut(s)	892, 1033, 1732, 2038, 2119, 2262, 2717, 2807, 2902
Sau96I	GGNCC	8 cut(s)	88, 419, 643, 805, 1131, 1308, 2645, 3053
ScaI	AGTACT	2 cut(s)	518, 2875
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	8 cut(s)	536, 680, 1664, 2025, 2129, 2208, 2565, 2715
SduI	GDGCHC	3 cut(s)	1280, 1350, 2894
SexAI	ACCWGGT	1 cut(s)	678
SfcI	CTRYAG	3 cut(s)	78, 2482, 2775
Sfr274I	CTCGAG	1 cut(s)	1349
SfuI	TTCGAA	2 cut(s)	65, 2518
SinI	GGWCC	5 cut(s)	88, 805, 1131, 1308, 3053
SlaI	CTCGAG	1 cut(s)	1349
SmiMI	CAYNNNNRTG	4 cut(s)	925, 1041, 1236, 1283
SmlI	CTYRAG	7 cut(s)	464, 499, 1349, 1418, 1529, 1575, 2134
SmoI	CTYRAG	7 cut(s)	464, 499, 1349, 1418, 1529, 1575, 2134
SphI	GCATGC	3 cut(s)	1589, 1639, 1647
SseBI	AGGCCT	1 cut(s)	1885
SsiI	CCGC	6 cut(s)	773, 2162, 2371, 2392, 2560, 2923
SspI	AATATT	1 cut(s)	952
SspMI	CTAG	6 cut(s)	1025, 1640, 1706, 1881, 2087, 2547
SstI	GAGCTC	1 cut(s)	1350
StuI	AGGCCT	1 cut(s)	1885
StyD4I	CCNGG	8 cut(s)	534, 678, 1662, 2023, 2127, 2206, 2563, 2713
TaaI	ACNGT	6 cut(s)	246, 402, 565, 1681, 1876, 1910
TaiI	ACGT	3 cut(s)	735, 1383, 2580
TaqI	TCGA	6 cut(s)	65, 103, 1350, 2301, 2518, 2952
TatI	WGTACW	4 cut(s)	495, 516, 1860, 2873
TauI	GCSGC	1 cut(s)	2563
TfiI	GAWTC	6 cut(s)	333, 759, 767, 1166, 1772, 2993
TscAI	CASTG	3 cut(s)	1176, 1285, 2118
TseFI	GTSAC	2 cut(s)	682, 1681
TseI	GCWGC	7 cut(s)	169, 359, 631, 1262, 2155, 2276, 2777
Tsp45I	GTSAC	2 cut(s)	682, 1681
TspDTI	ATGAA	7 cut(s)	951, 1008, 1747, 1782, 1797, 2599, 2616
TspRI	CASTG	3 cut(s)	1176, 1285, 2118
Van91I	CCANNNNNTGG	1 cut(s)	2213
Vha464I	CTTAAG	1 cut(s)	2134
VpaK11BI	GGWCC	5 cut(s)	88, 805, 1131, 1308, 3053
VspI	ATTAAT	1 cut(s)	2289
XapI	RAATTY	8 cut(s)	67, 202, 348, 539, 1138, 1160, 1804, 2095
XbaI	TCTAGA	1 cut(s)	1024
XceI	RCATGY	8 cut(s)	191, 659, 690, 1235, 1589, 1639, 1647, 2229
XhoI	CTCGAG	1 cut(s)	1349
XmnI	GAANNNNTTC	1 cut(s)	984
XspI	CTAG	6 cut(s)	1025, 1640, 1706, 1881, 2087, 2547
ZrmI	AGTACT	2 cut(s)	518, 2875
Zsp2I	ATGCAT	1 cut(s)	1637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.