FvH4_6g42010

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002970
Physical Location & Seq
Reverse (-)
32875625 .. 32881022
5398 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g42010.t1

Sequence Viewer

Length: 1314 bp
ATGCCAGACACTCGGCAGGCTCAGAAGAATGCCGCTCCCAATCAATCCGATGGCAACGTTGAAGAGGCGTTTTGGCAGTTGACAATCAATGAGAATCAAGACGGGGGCGGTGTAGCTCAATCTAACCTATACCCTGATCGTCCGGGGGAGCCGGATTGCATATATTATTTGAGGACTGGGTTGTGTGGTTATGGCAGTAATTGTCGTTTCAATCACCCTAAATATGCTTCACAGGCTGCTCAGTACAGTGGAGAACTCCCTGAAAGAGTTGGACAACCTGACTGTGGGTATTATCTGAAGACAGGGACTTGCAAATATGGATCAACCTGTAAATTTCATCATCCAAGGGACAGGCGTGGAGCTGGACCAGTGTTATTCAACGTTTTAGGACTGCCCATGCATCAGGAAGAAAAATCATGCCCGTATTACATGCGAACTGGATCATGCAAGTTTGGACCTGCGTGCAAGTTTCATCATCCCCAGCCTCCATCACTGACTACTGCCTTACCTGCTTTTGGATCTACAGGCTCATCAGTTGTGCCTTCTTCAGGTGTACCTTACACAGGTGGACTTTCTGCATGGTCGTTTCCAAGAGCACCATATGTAGCAGGCCCACGAATAGCAACTCCTCAACCTTACATGCCTGCAGTTGTTCTTTCTCCACCTCAAGGTGTTCTACCTGCCCATGGCTGGAATACATATGTGGGAAACTTGAGCCCTGTGTCTTCTACTAGCATTCTTGGATCCAATCTTACGTACAACTCTAGGGGTCAGGGGGAATCGGCTTCCAATGGGCAGGTTCACTTGCCATCAAGTCCTAACCTTCCGCAGAGACCTGATCAACCTGAGTGCCGGTACTATATGAACACTGGAACATGCAAATATGGAGCAGAATGCAAATACCATCACCCAAAAGAAAGGATTGCAGAATCCGCTACAAACCCACTTGGGCTTCCTTCAAGACCTGGTCAACCTGTATGTTCAAACTACATCATGTACGGAATCTGCAAGTACGGACCAACTTGCAGATTTGATCACCCCTTTATGGAACAGTCCGGTAACTATAGTTTCGGTATGCCTATGCTGGTTGACCCGTCTCCGCTAAGTTATCCAAGAAGCTGGATAGCTCCCCAAGGATTTGAGAGTTCCCCCTCTTCTATATCATCAAAATTTCCTGATCAGGTCCAAAAACCAGAGAGTGAAAAATATCAGAACTCAGAAACAAAGGTTCCAGAGGAATCCCCTGAACAAGCTGCTGGCACTTCACCTCCGTCACCATCTTCCTCCGAAACTGTACAAGACCAATCTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

438

Amino Acids

47.45

Weight (kDa)

7.11

Isoelectric Point (pI)

66.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH PF00642 48 - 74 2.2e-09 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 92 - 116 1e-09 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 138 - 161 4.5e-10 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 280 - 305 4.6e-10 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 322 - 347 4.9e-07 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 4 cut(s) 466, 517, 688, 787
AccBSI CCGCTC 1 cut(s) 35
AciI CCGC 5 cut(s) 33, 108, 827, 933, 1100
AclI AACGTT 2 cut(s) 57, 381
AclWI GGATC 5 cut(s) 328, 448, 526, 738, 751
AcsI RAATTY 2 cut(s) 332, 1169
AcuI CTGAAG 2 cut(s) 317, 531
AfaI GTAC 7 cut(s) 245, 555, 758, 857, 998, 1013, 1296
AfiI CCNNNNNNNGG 8 cut(s) 284, 515, 548, 563, 668, 686, 690, 1045
AgsI TTSAA 5 cut(s) 62, 211, 379, 960, 984
AjnI CCWGG 1 cut(s) 964
AluBI AGCT 5 cut(s) 116, 362, 1119, 1127, 1253
AluI AGCT 5 cut(s) 116, 362, 1119, 1127, 1253
Alw21I GWGCWC 1 cut(s) 598
Alw26I GTCTC 2 cut(s) 826, 1101
AlwI GGATC 5 cut(s) 328, 448, 526, 738, 751
AoxI GGCC 1 cut(s) 610
ApeKI GCWGC 2 cut(s) 236, 1253
ApoI RAATTY 2 cut(s) 332, 1169
AspS9I GGNCC 5 cut(s) 365, 455, 611, 1016, 1183
AsuC2I CCSGG 1 cut(s) 144
AsuHPI GGTGA 5 cut(s) 206, 899, 1028, 1257, 1266
AvaII GGWCC 4 cut(s) 365, 455, 1016, 1183
BamHI GGATCC 1 cut(s) 743
BanII GRGCYC 1 cut(s) 719
BbsI GAAGAC 2 cut(s) 305, 717
Bbv12I GWGCWC 1 cut(s) 598
BbvI GCAGC 2 cut(s) 223, 1240
BccI CCATC 5 cut(s) 44, 496, 817, 912, 1285
BciT130I CCWGG 1 cut(s) 966
BclI TGATCA 3 cut(s) 838, 1033, 1177
BcnI CCSGG 1 cut(s) 144
BcoDI GTCTC 2 cut(s) 826, 1101
BfaI CTAG 2 cut(s) 732, 765
BfmI CTRYAG 3 cut(s) 522, 645, 1063
BfuAI ACCTGC 4 cut(s) 466, 517, 688, 787
BisI GCNGC 3 cut(s) 33, 237, 1254
BlsI GCNGC 3 cut(s) 34, 238, 1255
Bme1390I CCNGG 2 cut(s) 144, 966
Bme18I GGWCC 4 cut(s) 365, 455, 1016, 1183
BmgT120I GGNCC 5 cut(s) 365, 455, 611, 1016, 1183
BmiI GGNNCC 3 cut(s) 150, 745, 1230
BmrFI CCNGG 2 cut(s) 144, 966
BmrI ACTGGG 1 cut(s) 186
BmsI GCATC 1 cut(s) 409
BmuI ACTGGG 1 cut(s) 186
BpiI GAAGAC 2 cut(s) 305, 717
BpuEI CTTGAG 2 cut(s) 651, 733
BpuMI CCSGG 1 cut(s) 144
BsaAI YACGTR 1 cut(s) 756
BsaI GGTCTC 1 cut(s) 826
BsaJI CCNNGG 4 cut(s) 143, 344, 685, 1132
BsaWI WCCGGW 1 cut(s) 1055
BsaXI ACNNNNNCTCC 2 cut(s) 1252, 1282
Bsc4I CCNNNNNNNGG 8 cut(s) 284, 515, 548, 563, 668, 686, 690, 1045
Bse118I RCCGGY 1 cut(s) 852
Bse1I ACTGG 4 cut(s) 181, 368, 442, 874
BseBI CCWGG 1 cut(s) 966
BseDI CCNNGG 4 cut(s) 143, 344, 685, 1132
BseGI GGATG 2 cut(s) 340, 475
BseLI CCNNNNNNNGG 8 cut(s) 284, 515, 548, 563, 668, 686, 690, 1045
BseMII CTCAG 4 cut(s) 35, 254, 837, 1230
BseNI ACTGG 4 cut(s) 181, 368, 442, 874
BseRI GAGGAG 1 cut(s) 618
BseXI GCAGC 2 cut(s) 223, 1240
BseYI CCCAGC 1 cut(s) 480
BshFI GGCC 1 cut(s) 612
BsiHKAI GWGCWC 1 cut(s) 598
BsiSI CCGG 4 cut(s) 143, 152, 853, 1056
BslFI GGGAC 2 cut(s) 319, 362
BslI CCNNNNNNNGG 8 cut(s) 284, 515, 548, 563, 668, 686, 690, 1045
BsmAI GTCTC 2 cut(s) 826, 1101
BsmBI CGTCTC 1 cut(s) 1101
BsmFI GGGAC 2 cut(s) 319, 362
BsmI GAATGC 3 cut(s) 34, 735, 899
BsnI GGCC 1 cut(s) 612
Bso31I GGTCTC 1 cut(s) 826
Bsp1286I GDGCHC 2 cut(s) 598, 719
Bsp1407I TGTACA 1 cut(s) 1294
Bsp143I GATC 8 cut(s) 136, 320, 440, 518, 743, 838, 1033, 1177
Bsp19I CCATGG 1 cut(s) 685
BspACI CCGC 5 cut(s) 33, 108, 827, 933, 1100
BspANI GGCC 1 cut(s) 612
BspCNI CTCAG 4 cut(s) 34, 253, 838, 1229
BspLI GGNNCC 3 cut(s) 150, 745, 1230
BspMAI CTGCAG 1 cut(s) 649
BspMI ACCTGC 4 cut(s) 466, 517, 688, 787
BspPI GGATC 5 cut(s) 328, 448, 526, 738, 751
BspTNI GGTCTC 1 cut(s) 826
BsrBI CCGCTC 1 cut(s) 35
BsrFI RCCGGY 1 cut(s) 852
BsrGI TGTACA 1 cut(s) 1294
BsrI ACTGG 4 cut(s) 181, 368, 442, 874
BssAI RCCGGY 1 cut(s) 852
BssECI CCNNGG 4 cut(s) 143, 344, 685, 1132
BssMI GATC 8 cut(s) 136, 320, 440, 518, 743, 838, 1033, 1177
BssT1I CCWWGG 3 cut(s) 344, 685, 1132
Bst2UI CCWGG 1 cut(s) 966
Bst4CI ACNGT 4 cut(s) 248, 284, 1053, 1294
Bst6I CTCTTC 2 cut(s) 57, 1159
BstAUI TGTACA 1 cut(s) 1294
BstBAI YACGTR 1 cut(s) 756
BstC8I GCNNGC 5 cut(s) 18, 463, 610, 645, 1258
BstDEI CTNAG 5 cut(s) 21, 240, 846, 1103, 1216
BstDSI CCRYGG 1 cut(s) 685
BstENI CCTNNNNNAGG 2 cut(s) 546, 561
BstF5I GGATG 2 cut(s) 340, 475
BstKTI GATC 8 cut(s) 139, 323, 443, 521, 746, 841, 1036, 1180
BstMAI GTCTC 2 cut(s) 826, 1101
BstMBI GATC 8 cut(s) 136, 320, 440, 518, 743, 838, 1033, 1177
BstMWI GCNNNNNNNGC 3 cut(s) 233, 509, 932
BstNI CCWGG 1 cut(s) 966
BstNSI RCATGY 3 cut(s) 433, 643, 879
BstSCI CCNGG 2 cut(s) 142, 964
BstSFI CTRYAG 3 cut(s) 522, 645, 1063
BstSNI TACGTA 1 cut(s) 756
BstV1I GCAGC 2 cut(s) 223, 1240
BstV2I GAAGAC 2 cut(s) 305, 717
BstX2I RGATCY 2 cut(s) 518, 743
BstXI CCANNNNNNTGG 1 cut(s) 1119
BstYI RGATCY 2 cut(s) 518, 743
BsuRI GGCC 1 cut(s) 612
BtgI CCRYGG 1 cut(s) 685
BtsCI GGATG 2 cut(s) 340, 475
BtsIMutI CAGTG 4 cut(s) 253, 375, 491, 867
BveI ACCTGC 4 cut(s) 466, 517, 688, 787
Cac8I GCNNGC 5 cut(s) 18, 463, 610, 645, 1258
Cfr10I RCCGGY 1 cut(s) 852
Cfr13I GGNCC 5 cut(s) 365, 455, 611, 1016, 1183
CsiI ACCWGGT 1 cut(s) 964
Csp6I GTAC 7 cut(s) 244, 554, 757, 856, 997, 1012, 1295
CviAII CATG 9 cut(s) 397, 417, 430, 444, 579, 640, 686, 876, 994
CviQI GTAC 7 cut(s) 244, 554, 757, 856, 997, 1012, 1295
DdeI CTNAG 5 cut(s) 21, 240, 846, 1103, 1216
DpnI GATC 8 cut(s) 138, 322, 442, 520, 745, 840, 1035, 1179
DpnII GATC 8 cut(s) 136, 320, 440, 518, 743, 838, 1033, 1177
Eam1104I CTCTTC 2 cut(s) 57, 1159
EarI CTCTTC 2 cut(s) 57, 1159
Eco105I TACGTA 1 cut(s) 756
Eco130I CCWWGG 3 cut(s) 344, 685, 1132
Eco24I GRGCYC 1 cut(s) 719
Eco31I GGTCTC 1 cut(s) 826
Eco47I GGWCC 4 cut(s) 365, 455, 1016, 1183
Eco57I CTGAAG 2 cut(s) 317, 531
EcoNI CCTNNNNNAGG 2 cut(s) 546, 561
EcoRII CCWGG 1 cut(s) 964
EcoT14I CCWWGG 3 cut(s) 344, 685, 1132
EcoT22I ATGCAT 1 cut(s) 402
EcoT38I GRGCYC 1 cut(s) 719
ErhI CCWWGG 3 cut(s) 344, 685, 1132
Esp3I CGTCTC 1 cut(s) 1101
FaeI CATG 9 cut(s) 400, 420, 433, 447, 582, 643, 689, 879, 997
FaqI GGGAC 2 cut(s) 319, 362
FatI CATG 9 cut(s) 396, 416, 429, 443, 578, 639, 685, 875, 993
FauNDI CATATG 2 cut(s) 601, 700
FbaI TGATCA 3 cut(s) 838, 1033, 1177
Fnu4HI GCNGC 3 cut(s) 33, 237, 1254
FokI GGATG 2 cut(s) 327, 462
FriOI GRGCYC 1 cut(s) 719
Fsp4HI GCNGC 3 cut(s) 33, 237, 1254
FspBI CTAG 2 cut(s) 732, 765
GluI GCNGC 3 cut(s) 33, 237, 1254
GsaI CCCAGC 1 cut(s) 484
HaeIII GGCC 1 cut(s) 612
HapII CCGG 4 cut(s) 143, 152, 853, 1056
Hin1II CATG 9 cut(s) 400, 420, 433, 447, 582, 643, 689, 879, 997
HincII GTYRAC 3 cut(s) 81, 971, 1090
HindII GTYRAC 3 cut(s) 81, 971, 1090
HinfI GANTC 5 cut(s) 94, 779, 929, 1002, 1238
HpaII CCGG 4 cut(s) 143, 152, 853, 1056
HphI GGTGA 5 cut(s) 206, 899, 1028, 1257, 1266
Hpy166II GTNNAC 6 cut(s) 81, 554, 569, 802, 971, 1090
Hpy188I TCNGA 6 cut(s) 24, 49, 297, 1212, 1219, 1288
Hpy188III TCNNGA 5 cut(s) 98, 404, 960, 1175, 1232
Hpy8I GTNNAC 6 cut(s) 81, 554, 569, 802, 971, 1090
HpyAV CCTTC 3 cut(s) 552, 833, 966
HpyCH4III ACNGT 4 cut(s) 248, 284, 1053, 1294
HpyCH4IV ACGT 3 cut(s) 57, 381, 755
HpyF10VI GCNNNNNNNGC 3 cut(s) 233, 509, 932
HpyF3I CTNAG 5 cut(s) 21, 240, 846, 1103, 1216
HpySE526I ACGT 3 cut(s) 57, 381, 755
Hsp92II CATG 9 cut(s) 400, 420, 433, 447, 582, 643, 689, 879, 997
Ksp22I TGATCA 3 cut(s) 838, 1033, 1177
Kzo9I GATC 8 cut(s) 136, 320, 440, 518, 743, 838, 1033, 1177
LmnI GCTCC 5 cut(s) 40, 148, 359, 887, 1132
Lsp1109I GCAGC 2 cut(s) 223, 1240
LweI GCATC 1 cut(s) 409
MabI ACCWGGT 1 cut(s) 964
MaeI CTAG 2 cut(s) 732, 765
MaeII ACGT 3 cut(s) 57, 381, 755
MaeIII GTNAC 2 cut(s) 1058, 1272
MalI GATC 8 cut(s) 138, 322, 442, 520, 745, 840, 1035, 1179
MbiI CCGCTC 1 cut(s) 35
MboI GATC 8 cut(s) 136, 320, 440, 518, 743, 838, 1033, 1177
MboII GAAGA 8 cut(s) 37, 74, 310, 419, 537, 717, 1146, 1272
MflI RGATCY 2 cut(s) 518, 743
MhlI GDGCHC 2 cut(s) 598, 719
MluCI AATT 3 cut(s) 199, 332, 1169
MmeI TCCRAC 1 cut(s) 250
MnlI CCTC 9 cut(s) 58, 165, 495, 639, 675, 1162, 1228, 1278, 1294
Mph1103I ATGCAT 1 cut(s) 402
MspI CCGG 4 cut(s) 143, 152, 853, 1056
MspR9I CCNGG 2 cut(s) 144, 966
Mva1269I GAATGC 3 cut(s) 34, 735, 899
MvaI CCWGG 1 cut(s) 966
MwoI GCNNNNNNNGC 3 cut(s) 233, 509, 932
NciI CCSGG 1 cut(s) 144
NcoI CCATGG 1 cut(s) 685
NdeI CATATG 2 cut(s) 601, 700
NdeII GATC 8 cut(s) 136, 320, 440, 518, 743, 838, 1033, 1177
NlaIII CATG 9 cut(s) 400, 420, 433, 447, 582, 643, 689, 879, 997
NlaIV GGNNCC 3 cut(s) 150, 745, 1230
NmuCI GTSAC 1 cut(s) 1272
NsiI ATGCAT 1 cut(s) 402
NspI RCATGY 3 cut(s) 433, 643, 879
PctI GAATGC 3 cut(s) 34, 735, 899
PfeI GAWTC 5 cut(s) 94, 779, 929, 1002, 1238
PflFI GACNNNGTC 1 cut(s) 966
PkrI GCNGC 3 cut(s) 34, 238, 1255
Ppu21I YACGTR 1 cut(s) 756
Psp1406I AACGTT 2 cut(s) 57, 381
Psp6I CCWGG 1 cut(s) 964
PspFI CCCAGC 1 cut(s) 480
PspGI CCWGG 1 cut(s) 964
PspN4I GGNNCC 3 cut(s) 150, 745, 1230
PspPI GGNCC 5 cut(s) 365, 455, 611, 1016, 1183
PstI CTGCAG 1 cut(s) 649
PsuI RGATCY 2 cut(s) 518, 743
PsyI GACNNNGTC 1 cut(s) 966
RsaI GTAC 7 cut(s) 245, 555, 758, 857, 998, 1013, 1296
RsaNI GTAC 7 cut(s) 244, 554, 757, 856, 997, 1012, 1295
SatI GCNGC 3 cut(s) 33, 237, 1254
Sau3AI GATC 8 cut(s) 136, 320, 440, 518, 743, 838, 1033, 1177
Sau96I GGNCC 5 cut(s) 365, 455, 611, 1016, 1183
ScrFI CCNGG 2 cut(s) 144, 966
SduI GDGCHC 2 cut(s) 598, 719
SexAI ACCWGGT 1 cut(s) 964
SfaNI GCATC 1 cut(s) 409
SfcI CTRYAG 3 cut(s) 522, 645, 1063
SinI GGWCC 4 cut(s) 365, 455, 1016, 1183
SmlI CTYRAG 2 cut(s) 666, 712
SmoI CTYRAG 2 cut(s) 666, 712
SnaBI TACGTA 1 cut(s) 756
Sse9I AATT 3 cut(s) 199, 332, 1169
SsiI CCGC 5 cut(s) 33, 108, 827, 933, 1100
SspMI CTAG 2 cut(s) 732, 765
StyD4I CCNGG 2 cut(s) 142, 964
StyI CCWWGG 3 cut(s) 344, 685, 1132
TaaI ACNGT 4 cut(s) 248, 284, 1053, 1294
TaiI ACGT 3 cut(s) 60, 384, 758
TasI AATT 3 cut(s) 199, 332, 1169
TatI WGTACW 2 cut(s) 243, 1294
TauI GCSGC 1 cut(s) 35
TfiI GAWTC 5 cut(s) 94, 779, 929, 1002, 1238
TscAI CASTG 4 cut(s) 253, 375, 498, 874
TseFI GTSAC 1 cut(s) 1272
TseI GCWGC 2 cut(s) 236, 1253
Tsp45I GTSAC 1 cut(s) 1272
TspDTI ATGAA 3 cut(s) 326, 461, 878
TspGWI ACGGA 3 cut(s) 1014, 1029, 1260
TspRI CASTG 4 cut(s) 253, 375, 498, 874
Tth111I GACNNNGTC 1 cut(s) 966
VpaK11BI GGWCC 4 cut(s) 365, 455, 1016, 1183
XagI CCTNNNNNAGG 2 cut(s) 546, 561
XapI RAATTY 2 cut(s) 332, 1169
XceI RCATGY 3 cut(s) 433, 643, 879
XspI CTAG 2 cut(s) 732, 765
Zsp2I ATGCAT 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.