Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0002970

Physical Location & Seq

Genomic Coordinates Reverse (-)

36129333 .. 36131306

Gene Structure 1974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1279800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGTGGCAATTGGGGCTGACGAGCAGCGAGTCATATCCGGAGAGACCTGGCGTGCCCAACTGTGTCTACTACATGCGAACCGGGTTCTGTGGATACGGTGGTCGGTGCCGGTACAACCATCCTCGTGATCGTGCTGCGGTCATGGCAACTGTAAGAGCTACAGGGGATTACCCAGAGATAGTAGGGGAACCTGTATGTGAGTATTATTTAAAGACTGGGACCTGTAAATTTGGTGCGTCCTGCAACCTTTGGAGCTGGATCCTTAAACCGAGCTCACCTAAATATTTATGGATACCCATTACGACCGGTTTGCTGATTTCTCTCTGTTTCCCTCTCATCCACATATGGTGGTGTGTGACTTTTGTGAAATTTGTGAGCAAGTGGCTCACAGTTGTTTTTTTTTTAAATTATATTTTTTTTATAACAGGGCTGGATCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

147

Amino Acids

16.79

Weight (kDa)

8.8

Isoelectric Point (pI)

36.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	17 - 42	8.9e-09	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH	PF00642	63 - 82	5.7e-07	Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04990 AT1G04990 AT1G04990 AT1G04990 AT1G04990 AT1G04990 AT2G32930 AT2G32930 AT2G32930
fragaria_vesca	FvH4_3g13621 FvH4_6g42010 FvH4_6g42010
malus_domestica	MD03G1135600.v1.1 MD03G1279200.v1.1 MD03G1279800.v1.1 MD05G1053000.v1.1 MD06G1100700.v1.1 MD09G1115400.v1.1 MD10G1110500.v1.1 MD17G1107000.v1.1
prunus_persica	Prupe.3G209200_v2.0.a1 Prupe.3G209200_v2.0.a1
pyrus_communis	pycom09g03970 pycom09g03980 pycom17g09960
rosa_chinensis	RchiOBHm_Chr2g0157941
rosa_laevigata	RLG00000021036
rosa_multiflora	Rmu_sc0011758.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091850
rosa_rugosa	Rorug01G0068500 Rorug02G0304500.1 Rorug02G0464400
rosa_samantha	Rh2AG529800 Rh2BG544500 Rh2CG514200 Rh2DG552800 Rh5BG160500
rosa_wichuraiana	Rw2G043860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	422
AccB1I	GGYRCC	1 cut(s)	105
AccI	GTMKAC	1 cut(s)	66
AccIII	TCCGGA	1 cut(s)	37
AciI	CCGC	1 cut(s)	137
AclWI	GGATC	3 cut(s)	253, 266, 428
AcsI	RAATTY	2 cut(s)	227, 368
AfaI	GTAC	1 cut(s)	113
AgeI	ACCGGT	1 cut(s)	305
AjnI	CCWGG	1 cut(s)	46
AluBI	AGCT	3 cut(s)	158, 255, 273
AluI	AGCT	3 cut(s)	158, 255, 273
Alw21I	GWGCWC	1 cut(s)	275
Alw26I	GTCTC	1 cut(s)	37
AlwI	GGATC	3 cut(s)	253, 266, 428
Aor13HI	TCCGGA	1 cut(s)	37
ApeKI	GCWGC	2 cut(s)	24, 134
ApoI	RAATTY	2 cut(s)	227, 368
AsiGI	ACCGGT	1 cut(s)	305
AspS9I	GGNCC	1 cut(s)	219
AsuC2I	CCSGG	1 cut(s)	82
AsuHPI	GGTGA	1 cut(s)	267
AvaII	GGWCC	1 cut(s)	219
BaeGI	GKGCMC	1 cut(s)	57
BaeI	ACNNNNGTAYC	2 cut(s)	85, 118
BamHI	GGATCC	2 cut(s)	258, 433
BanI	GGYRCC	1 cut(s)	105
BanII	GRGCYC	1 cut(s)	275
BauI	CACGAG	1 cut(s)	123
Bbv12I	GWGCWC	1 cut(s)	275
BbvI	GCAGC	2 cut(s)	36, 121
BccI	CCATC	1 cut(s)	126
BcgI	CGANNNNNNTGC	2 cut(s)	292, 326
BciT130I	CCWGG	1 cut(s)	48
BciVI	GTATCC	2 cut(s)	86, 285
BcnI	CCSGG	1 cut(s)	82
BcoDI	GTCTC	1 cut(s)	37
BfmI	CTRYAG	1 cut(s)	159
BfuI	GTATCC	2 cut(s)	86, 285
BisI	GCNGC	2 cut(s)	25, 135
BlsI	GCNGC	2 cut(s)	26, 136
Bme1390I	CCNGG	2 cut(s)	48, 82
Bme18I	GGWCC	1 cut(s)	219
BmgT120I	GGNCC	1 cut(s)	219
BmiI	GGNNCC	5 cut(s)	107, 189, 220, 260, 435
BmrFI	CCNGG	2 cut(s)	48, 82
BmrI	ACTGGG	1 cut(s)	225
BmuI	ACTGGG	1 cut(s)	225
BpuMI	CCSGG	1 cut(s)	82
BsaI	GGTCTC	1 cut(s)	37
BsaWI	WCCGGW	2 cut(s)	37, 305
Bse118I	RCCGGY	2 cut(s)	108, 305
Bse1I	ACTGG	1 cut(s)	220
BseAI	TCCGGA	1 cut(s)	37
BseBI	CCWGG	1 cut(s)	48
BseGI	GGATG	2 cut(s)	118, 336
BseNI	ACTGG	1 cut(s)	220
BseSI	GKGCMC	1 cut(s)	57
BseXI	GCAGC	2 cut(s)	36, 121
Bsh1285I	CGRYCG	1 cut(s)	306
BshNI	GGYRCC	1 cut(s)	105
BshTI	ACCGGT	1 cut(s)	305
BsiEI	CGRYCG	1 cut(s)	306
BsiHKAI	GWGCWC	1 cut(s)	275
BsiSI	CCGG	4 cut(s)	38, 81, 109, 306
BslFI	GGGAC	1 cut(s)	232
BsmAI	GTCTC	1 cut(s)	37
BsmFI	GGGAC	1 cut(s)	232
Bso31I	GGTCTC	1 cut(s)	37
Bsp1286I	GDGCHC	2 cut(s)	57, 275
Bsp13I	TCCGGA	1 cut(s)	37
Bsp143I	GATC	3 cut(s)	127, 258, 433
BspACI	CCGC	1 cut(s)	137
BspEI	TCCGGA	1 cut(s)	37
BspLI	GGNNCC	5 cut(s)	107, 189, 220, 260, 435
BspPI	GGATC	3 cut(s)	253, 266, 428
BspT107I	GGYRCC	1 cut(s)	105
BspTNI	GGTCTC	1 cut(s)	37
BsrFI	RCCGGY	2 cut(s)	108, 305
BsrI	ACTGG	1 cut(s)	220
BssAI	RCCGGY	2 cut(s)	108, 305
BssMI	GATC	3 cut(s)	127, 258, 433
BssSI	CACGAG	1 cut(s)	123
Bst2BI	CACGAG	1 cut(s)	123
Bst2UI	CCWGG	1 cut(s)	48
Bst4CI	ACNGT	4 cut(s)	62, 98, 151, 391
BstC8I	GCNNGC	1 cut(s)	53
BstF5I	GGATG	2 cut(s)	118, 336
BstKTI	GATC	3 cut(s)	130, 261, 436
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	3 cut(s)	127, 258, 433
BstMCI	CGRYCG	1 cut(s)	306
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 143
BstNI	CCWGG	1 cut(s)	48
BstNSI	RCATGY	1 cut(s)	76
BstSCI	CCNGG	2 cut(s)	46, 80
BstSFI	CTRYAG	1 cut(s)	159
BstSLI	GKGCMC	1 cut(s)	57
BstV1I	GCAGC	2 cut(s)	36, 121
BstX2I	RGATCY	2 cut(s)	258, 433
BstYI	RGATCY	2 cut(s)	258, 433
BsuI	GTATCC	2 cut(s)	86, 285
BtsCI	GGATG	2 cut(s)	118, 336
Cac8I	GCNNGC	1 cut(s)	53
Cfr10I	RCCGGY	2 cut(s)	108, 305
Cfr13I	GGNCC	1 cut(s)	219
CseI	GACGC	1 cut(s)	225
Csp6I	GTAC	1 cut(s)	112
CspAI	ACCGGT	1 cut(s)	305
CviAII	CATG	2 cut(s)	73, 142
CviJI	RGCY	6 cut(s)	16, 158, 255, 273, 385, 430
CviKI_1	RGCY	6 cut(s)	16, 158, 255, 273, 385, 430
CviQI	GTAC	1 cut(s)	112
DpnI	GATC	3 cut(s)	129, 260, 435
DpnII	GATC	3 cut(s)	127, 258, 433
DraI	TTTAAA	2 cut(s)	210, 405
Ecl136II	GAGCTC	1 cut(s)	273
Eco24I	GRGCYC	1 cut(s)	275
Eco31I	GGTCTC	1 cut(s)	37
Eco47I	GGWCC	1 cut(s)	219
Eco53kI	GAGCTC	1 cut(s)	273
EcoICRI	GAGCTC	1 cut(s)	273
EcoO109I	RGGNCCY	1 cut(s)	219
EcoRII	CCWGG	1 cut(s)	46
EcoT38I	GRGCYC	1 cut(s)	275
FaeI	CATG	2 cut(s)	76, 145
FaiI	YATR	9 cut(s)	34, 74, 143, 196, 289, 344, 346, 411, 422
FaqI	GGGAC	1 cut(s)	232
FatI	CATG	2 cut(s)	72, 141
FauNDI	CATATG	1 cut(s)	344
FblI	GTMKAC	1 cut(s)	66
Fnu4HI	GCNGC	2 cut(s)	25, 135
FokI	GGATG	2 cut(s)	105, 323
FriOI	GRGCYC	1 cut(s)	275
Fsp4HI	GCNGC	2 cut(s)	25, 135
GluI	GCNGC	2 cut(s)	25, 135
HapII	CCGG	4 cut(s)	38, 81, 109, 306
HgaI	GACGC	1 cut(s)	225
Hin1II	CATG	2 cut(s)	76, 145
HinfI	GANTC	1 cut(s)	29
HpaII	CCGG	4 cut(s)	38, 81, 109, 306
HphI	GGTGA	1 cut(s)	267
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188III	TCNNGA	2 cut(s)	38, 125
Hpy8I	GTNNAC	1 cut(s)	67
HpyCH4III	ACNGT	4 cut(s)	62, 98, 151, 391
HpyCH4V	TGCA	1 cut(s)	243
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 143
Hsp92II	CATG	2 cut(s)	76, 145
Kpn2I	TCCGGA	1 cut(s)	37
Kzo9I	GATC	3 cut(s)	127, 258, 433
LmnI	GCTCC	1 cut(s)	252
Lsp1109I	GCAGC	2 cut(s)	36, 121
MaeIII	GTNAC	1 cut(s)	355
MalI	GATC	3 cut(s)	129, 260, 435
MboI	GATC	3 cut(s)	127, 258, 433
MfeI	CAATTG	1 cut(s)	8
MflI	RGATCY	2 cut(s)	258, 433
MhlI	GDGCHC	2 cut(s)	57, 275
MluCI	AATT	4 cut(s)	8, 227, 368, 406
MlyI	GAGTC	1 cut(s)	38
MnlI	CCTC	2 cut(s)	132, 342
MroI	TCCGGA	1 cut(s)	37
MseI	TTAA	4 cut(s)	209, 264, 404, 439
MslI	CAYNNNNRTG	1 cut(s)	123
MspI	CCGG	4 cut(s)	38, 81, 109, 306
MspR9I	CCNGG	2 cut(s)	48, 82
MunI	CAATTG	1 cut(s)	8
MvaI	CCWGG	1 cut(s)	48
MwoI	GCNNNNNNNGC	2 cut(s)	13, 143
NciI	CCSGG	1 cut(s)	82
NdeI	CATATG	1 cut(s)	344
NdeII	GATC	3 cut(s)	127, 258, 433
NlaIII	CATG	2 cut(s)	76, 145
NlaIV	GGNNCC	5 cut(s)	107, 189, 220, 260, 435
NmuCI	GTSAC	1 cut(s)	355
NspI	RCATGY	1 cut(s)	76
PinAI	ACCGGT	1 cut(s)	305
PkrI	GCNGC	2 cut(s)	26, 136
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
PpuMI	RGGWCCY	1 cut(s)	219
PsiI	TTATAA	1 cut(s)	422
Psp124BI	GAGCTC	1 cut(s)	275
Psp5II	RGGWCCY	1 cut(s)	219
Psp6I	CCWGG	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	46
PspN4I	GGNNCC	5 cut(s)	107, 189, 220, 260, 435
PspPI	GGNCC	1 cut(s)	219
PspPPI	RGGWCCY	1 cut(s)	219
PsuI	RGATCY	2 cut(s)	258, 433
RsaI	GTAC	1 cut(s)	113
RsaNI	GTAC	1 cut(s)	112
RseI	CAYNNNNRTG	1 cut(s)	123
SacI	GAGCTC	1 cut(s)	275
SaqAI	TTAA	4 cut(s)	209, 264, 404, 439
SatI	GCNGC	2 cut(s)	25, 135
Sau3AI	GATC	3 cut(s)	127, 258, 433
Sau96I	GGNCC	1 cut(s)	219
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	2 cut(s)	48, 82
SduI	GDGCHC	2 cut(s)	57, 275
SetI	ASST	8 cut(s)	49, 160, 193, 224, 249, 257, 275, 280
SfcI	CTRYAG	1 cut(s)	159
SinI	GGWCC	1 cut(s)	219
SmiMI	CAYNNNNRTG	1 cut(s)	123
Sse9I	AATT	4 cut(s)	8, 227, 368, 406
SsiI	CCGC	1 cut(s)	137
SspI	AATATT	1 cut(s)	284
SstI	GAGCTC	1 cut(s)	275
StyD4I	CCNGG	2 cut(s)	46, 80
TaaI	ACNGT	4 cut(s)	62, 98, 151, 391
TasI	AATT	4 cut(s)	8, 227, 368, 406
Tru1I	TTAA	4 cut(s)	209, 264, 404, 439
Tru9I	TTAA	4 cut(s)	209, 264, 404, 439
TseFI	GTSAC	1 cut(s)	355
TseI	GCWGC	2 cut(s)	24, 134
Tsp45I	GTSAC	1 cut(s)	355
VpaK11BI	GGWCC	1 cut(s)	219
XapI	RAATTY	2 cut(s)	227, 368
XceI	RCATGY	1 cut(s)	76
XmiI	GTMKAC	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.