Rh2BG544500

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0002970
Physical Location & Seq
Reverse (-)
75274871 .. 75279709
4839 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG544500.1

Sequence Viewer

Length: 1086 bp
ATGGAGAATGAACAAGCTTGGGTTGGCACATTTGTGACTGCTTATCCCAAACATTTGTGGCAGTATTATCTGAAGACAGGGACTTGCAAATATGGATCAACCTGTAAATTCCATCATCCAAGGGACAGGCGTGGAGCTGGACCAGTTTTGTTCAACATATTAGGACTGCCCATGCATCAGGAAGAAAAATCATGTCCATATTACATGCGAACTGGATCATGCAAGTTTGGACCTGCATGCAAGTTTCATCATCCCCAGCCTCCGTCATTTGGAACTGCCGTACCTGCTTTTGGATCTACAGGCTCAACAGTTGTGCCTTCTTCAGGTGTACCTTACTCAGGTGGACTTTCTGCGTGGTCATTTCCAAGAGCACCATATGTAGCAGGCCCACGTTTAGCAACTCCTCAACCTTACATGCCTGCAGTTGTTCTTTCTCCGCCTCAAGGCGTTCTACCTGCCCATGGCTGGAATACCTATGTGGGAAACTTGAGCCCTGTGTCTTCGACTAGCATTCTTGGATCTAATCTTGCGTACAACTCCAGAAGTCAGGGGGAATCAGCTTCCAATGGGCAGGTTCACTTGTCATCAAGTCCAAATCTCCCCCAGAGGCCTGACCAGCCTGAGTGCCGGTACTTTATGAACACTGGAACATGCAAATATGGAGCAGAATGCAAATACCATCACCCAAAAGAAAGGATTGCAGAATCCGCTACAAACCCACTTGGGCTTCCCTCAAGACCTGGGCAACCTTTATGTACAAACTACATCATGTATGGAATCTGCAAGTATGGACCAACTTGCAGATTTGATCACCCCTTTATGGAACATTCCGGTAACTATAGTTTTGGTATGCCTATGCTGCTTGATTCGTCTCCACTAAATTATACCAGAAACTGGATAGCTCCCCAAGGATTTGAGACTTCCCCCTCTATATCATCAAAATTTCCTGATGTGGTCCAAAAACCAGAGAGCGAAAAATATCAGAACTCAGAAACAAAGGTTCCAGAAGAATCCCCTGAACGAGCTACTGGCACTTTACCTCCGTCACCATCTTCCTCCGAAACTGTACAAGACCAATCTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

361

Amino Acids

39.5

Weight (kDa)

8.55

Isoelectric Point (pI)

67.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH PF00642 21 - 41 3.9e-08 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 63 - 86 3.6e-10 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 205 - 230 3e-10 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 247 - 272 2e-07 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 4 cut(s) 241, 292, 463, 562
AccB7I CCANNNNNTGG 1 cut(s) 894
AciI CCGC 2 cut(s) 437, 708
AclWI GGATC 4 cut(s) 103, 223, 301, 526
AcsI RAATTY 2 cut(s) 107, 941
AcuI CTGAAG 2 cut(s) 92, 306
AfaI GTAC 6 cut(s) 282, 330, 533, 632, 757, 1068
AfiI CCNNNNNNNGG 9 cut(s) 269, 290, 323, 338, 443, 461, 465, 820, 894
AgsI TTSAA 1 cut(s) 154
AjnI CCWGG 1 cut(s) 739
AleI CACNNNNGTG 1 cut(s) 32
AluBI AGCT 5 cut(s) 17, 137, 560, 902, 1025
AluI AGCT 5 cut(s) 17, 137, 560, 902, 1025
Alw21I GWGCWC 1 cut(s) 373
Alw26I GTCTC 2 cut(s) 876, 911
AlwI GGATC 4 cut(s) 103, 223, 301, 526
AlwNI CAGNNNCTG 1 cut(s) 894
AoxI GGCC 2 cut(s) 385, 608
ApeKI GCWGC 1 cut(s) 859
ApoI RAATTY 2 cut(s) 107, 941
AspS9I GGNCC 5 cut(s) 140, 230, 386, 791, 955
AsuHPI GGTGA 3 cut(s) 674, 803, 1038
AvaII GGWCC 4 cut(s) 140, 230, 791, 955
BaeI ACNNNNGTAYC 2 cut(s) 264, 297
BanII GRGCYC 1 cut(s) 494
BbsI GAAGAC 2 cut(s) 80, 492
Bbv12I GWGCWC 1 cut(s) 373
BbvI GCAGC 1 cut(s) 846
BccI CCATC 3 cut(s) 120, 687, 1057
BceAI ACGGC 1 cut(s) 263
BciT130I CCWGG 1 cut(s) 741
BclI TGATCA 1 cut(s) 808
BcoDI GTCTC 2 cut(s) 876, 911
BfaI CTAG 1 cut(s) 507
BfmI CTRYAG 3 cut(s) 297, 420, 838
BfuAI ACCTGC 4 cut(s) 241, 292, 463, 562
BisI GCNGC 1 cut(s) 860
BlsI GCNGC 1 cut(s) 861
Bme1390I CCNGG 1 cut(s) 741
Bme18I GGWCC 4 cut(s) 140, 230, 791, 955
BmgT120I GGNCC 5 cut(s) 140, 230, 386, 791, 955
BmiI GGNNCC 1 cut(s) 1002
BmrFI CCNGG 1 cut(s) 741
BmsI GCATC 1 cut(s) 184
BpiI GAAGAC 2 cut(s) 80, 492
BpmI CTGGAG 1 cut(s) 523
BpuEI CTTGAG 3 cut(s) 426, 508, 718
BsaJI CCNNGG 4 cut(s) 119, 460, 740, 907
BsaWI WCCGGW 1 cut(s) 830
BsaXI ACNNNNNCTCC 2 cut(s) 1024, 1054
Bsc4I CCNNNNNNNGG 9 cut(s) 269, 290, 323, 338, 443, 461, 465, 820, 894
Bse118I RCCGGY 1 cut(s) 627
Bse1I ACTGG 5 cut(s) 143, 217, 649, 899, 1033
BseBI CCWGG 1 cut(s) 741
BseDI CCNNGG 4 cut(s) 119, 460, 740, 907
BseGI GGATG 2 cut(s) 115, 250
BseLI CCNNNNNNNGG 9 cut(s) 269, 290, 323, 338, 443, 461, 465, 820, 894
BseMII CTCAG 3 cut(s) 351, 612, 1002
BseNI ACTGG 5 cut(s) 143, 217, 649, 899, 1033
BseRI GAGGAG 1 cut(s) 393
BseXI GCAGC 1 cut(s) 846
BseYI CCCAGC 1 cut(s) 255
BshFI GGCC 2 cut(s) 387, 610
BsiHKAI GWGCWC 1 cut(s) 373
BsiSI CCGG 2 cut(s) 628, 831
BslFI GGGAC 2 cut(s) 94, 137
BslI CCNNNNNNNGG 9 cut(s) 269, 290, 323, 338, 443, 461, 465, 820, 894
BsmAI GTCTC 2 cut(s) 876, 911
BsmBI CGTCTC 1 cut(s) 876
BsmFI GGGAC 2 cut(s) 94, 137
BsmI GAATGC 2 cut(s) 510, 674
BsnI GGCC 2 cut(s) 387, 610
Bsp1286I GDGCHC 2 cut(s) 373, 494
Bsp1407I TGTACA 2 cut(s) 755, 1066
Bsp143I GATC 5 cut(s) 95, 215, 293, 518, 808
Bsp19I CCATGG 1 cut(s) 460
BspACI CCGC 2 cut(s) 437, 708
BspANI GGCC 2 cut(s) 387, 610
BspCNI CTCAG 3 cut(s) 350, 613, 1001
BspLI GGNNCC 1 cut(s) 1002
BspMAI CTGCAG 1 cut(s) 424
BspMI ACCTGC 4 cut(s) 241, 292, 463, 562
BspPI GGATC 4 cut(s) 103, 223, 301, 526
BsrFI RCCGGY 1 cut(s) 627
BsrGI TGTACA 2 cut(s) 755, 1066
BsrI ACTGG 5 cut(s) 143, 217, 649, 899, 1033
BssAI RCCGGY 1 cut(s) 627
BssECI CCNNGG 4 cut(s) 119, 460, 740, 907
BssMI GATC 5 cut(s) 95, 215, 293, 518, 808
BssT1I CCWWGG 3 cut(s) 119, 460, 907
Bst2UI CCWGG 1 cut(s) 741
Bst4CI ACNGT 2 cut(s) 310, 1066
BstAUI TGTACA 2 cut(s) 755, 1066
BstC8I GCNNGC 3 cut(s) 238, 385, 420
BstDEI CTNAG 3 cut(s) 337, 621, 988
BstDSI CCRYGG 1 cut(s) 460
BstENI CCTNNNNNAGG 2 cut(s) 321, 336
BstF5I GGATG 2 cut(s) 115, 250
BstKTI GATC 5 cut(s) 98, 218, 296, 521, 811
BstMAI GTCTC 2 cut(s) 876, 911
BstMBI GATC 5 cut(s) 95, 215, 293, 518, 808
BstMWI GCNNNNNNNGC 4 cut(s) 284, 616, 707, 859
BstNI CCWGG 1 cut(s) 741
BstNSI RCATGY 4 cut(s) 208, 240, 418, 654
BstSCI CCNGG 1 cut(s) 739
BstSFI CTRYAG 3 cut(s) 297, 420, 838
BstV1I GCAGC 1 cut(s) 846
BstV2I GAAGAC 2 cut(s) 80, 492
BstX2I RGATCY 2 cut(s) 293, 518
BstYI RGATCY 2 cut(s) 293, 518
BsuRI GGCC 2 cut(s) 387, 610
BtgI CCRYGG 1 cut(s) 460
BtsCI GGATG 2 cut(s) 115, 250
BtsIMutI CAGTG 1 cut(s) 642
BveI ACCTGC 4 cut(s) 241, 292, 463, 562
Cac8I GCNNGC 3 cut(s) 238, 385, 420
CaiI CAGNNNCTG 1 cut(s) 894
Cfr10I RCCGGY 1 cut(s) 627
Cfr13I GGNCC 5 cut(s) 140, 230, 386, 791, 955
Csp6I GTAC 6 cut(s) 281, 329, 532, 631, 756, 1067
CviAII CATG 9 cut(s) 172, 192, 205, 219, 237, 415, 461, 651, 769
CviQI GTAC 6 cut(s) 281, 329, 532, 631, 756, 1067
DdeI CTNAG 3 cut(s) 337, 621, 988
DpnI GATC 5 cut(s) 97, 217, 295, 520, 810
DpnII GATC 5 cut(s) 95, 215, 293, 518, 808
EciI GGCGGA 1 cut(s) 426
Eco130I CCWWGG 3 cut(s) 119, 460, 907
Eco147I AGGCCT 1 cut(s) 610
Eco24I GRGCYC 1 cut(s) 494
Eco47I GGWCC 4 cut(s) 140, 230, 791, 955
Eco57I CTGAAG 2 cut(s) 92, 306
EcoNI CCTNNNNNAGG 2 cut(s) 321, 336
EcoRII CCWGG 1 cut(s) 739
EcoT14I CCWWGG 3 cut(s) 119, 460, 907
EcoT22I ATGCAT 1 cut(s) 177
EcoT38I GRGCYC 1 cut(s) 494
ErhI CCWWGG 3 cut(s) 119, 460, 907
Esp3I CGTCTC 1 cut(s) 876
FaeI CATG 9 cut(s) 175, 195, 208, 222, 240, 418, 464, 654, 772
FaqI GGGAC 2 cut(s) 94, 137
FatI CATG 9 cut(s) 171, 191, 204, 218, 236, 414, 460, 650, 768
FauNDI CATATG 1 cut(s) 376
FbaI TGATCA 1 cut(s) 808
Fnu4HI GCNGC 1 cut(s) 860
FokI GGATG 2 cut(s) 102, 237
FriOI GRGCYC 1 cut(s) 494
Fsp4HI GCNGC 1 cut(s) 860
FspBI CTAG 1 cut(s) 507
GluI GCNGC 1 cut(s) 860
GsaI CCCAGC 1 cut(s) 259
GsuI CTGGAG 1 cut(s) 523
HaeIII GGCC 2 cut(s) 387, 610
HapII CCGG 2 cut(s) 628, 831
Hin1II CATG 9 cut(s) 175, 195, 208, 222, 240, 418, 464, 654, 772
HindIII AAGCTT 1 cut(s) 15
HinfI GANTC 5 cut(s) 554, 704, 777, 866, 1010
HpaII CCGG 2 cut(s) 628, 831
HphI GGTGA 3 cut(s) 674, 803, 1038
Hpy166II GTNNAC 3 cut(s) 329, 344, 577
Hpy188I TCNGA 4 cut(s) 72, 984, 991, 1060
Hpy188III TCNNGA 5 cut(s) 179, 540, 735, 947, 1004
Hpy8I GTNNAC 3 cut(s) 329, 344, 577
HpyAV CCTTC 1 cut(s) 327
HpyCH4III ACNGT 2 cut(s) 310, 1066
HpyCH4IV ACGT 1 cut(s) 391
HpyF10VI GCNNNNNNNGC 4 cut(s) 284, 616, 707, 859
HpyF3I CTNAG 3 cut(s) 337, 621, 988
HpySE526I ACGT 1 cut(s) 391
Hsp92II CATG 9 cut(s) 175, 195, 208, 222, 240, 418, 464, 654, 772
Ksp22I TGATCA 1 cut(s) 808
Kzo9I GATC 5 cut(s) 95, 215, 293, 518, 808
LmnI GCTCC 3 cut(s) 134, 662, 907
Lsp1109I GCAGC 1 cut(s) 846
LweI GCATC 1 cut(s) 184
MaeI CTAG 1 cut(s) 507
MaeII ACGT 1 cut(s) 391
MaeIII GTNAC 3 cut(s) 34, 833, 1044
MalI GATC 5 cut(s) 97, 217, 295, 520, 810
MboI GATC 5 cut(s) 95, 215, 293, 518, 808
MboII GAAGA 6 cut(s) 85, 194, 312, 492, 1019, 1044
MflI RGATCY 2 cut(s) 293, 518
MhlI GDGCHC 2 cut(s) 373, 494
MluCI AATT 3 cut(s) 107, 880, 941
MnlI CCTC 8 cut(s) 270, 414, 450, 600, 742, 937, 1050, 1066
Mph1103I ATGCAT 1 cut(s) 177
MslI CAYNNNNRTG 1 cut(s) 32
MspI CCGG 2 cut(s) 628, 831
MspR9I CCNGG 1 cut(s) 741
Mva1269I GAATGC 2 cut(s) 510, 674
MvaI CCWGG 1 cut(s) 741
MwoI GCNNNNNNNGC 4 cut(s) 284, 616, 707, 859
NcoI CCATGG 1 cut(s) 460
NdeI CATATG 1 cut(s) 376
NdeII GATC 5 cut(s) 95, 215, 293, 518, 808
NlaIII CATG 9 cut(s) 175, 195, 208, 222, 240, 418, 464, 654, 772
NlaIV GGNNCC 1 cut(s) 1002
NmuCI GTSAC 2 cut(s) 34, 1044
NsiI ATGCAT 1 cut(s) 177
NspI RCATGY 4 cut(s) 208, 240, 418, 654
OliI CACNNNNGTG 1 cut(s) 32
PaeI GCATGC 1 cut(s) 240
PceI AGGCCT 1 cut(s) 610
PctI GAATGC 2 cut(s) 510, 674
PfeI GAWTC 5 cut(s) 554, 704, 777, 866, 1010
PflMI CCANNNNNTGG 1 cut(s) 894
PkrI GCNGC 1 cut(s) 861
Psp6I CCWGG 1 cut(s) 739
PspFI CCCAGC 1 cut(s) 255
PspGI CCWGG 1 cut(s) 739
PspN4I GGNNCC 1 cut(s) 1002
PspPI GGNCC 5 cut(s) 140, 230, 386, 791, 955
PstI CTGCAG 1 cut(s) 424
PstNI CAGNNNCTG 1 cut(s) 894
PsuI RGATCY 2 cut(s) 293, 518
RsaI GTAC 6 cut(s) 282, 330, 533, 632, 757, 1068
RsaNI GTAC 6 cut(s) 281, 329, 532, 631, 756, 1067
RseI CAYNNNNRTG 1 cut(s) 32
SatI GCNGC 1 cut(s) 860
Sau3AI GATC 5 cut(s) 95, 215, 293, 518, 808
Sau96I GGNCC 5 cut(s) 140, 230, 386, 791, 955
ScrFI CCNGG 1 cut(s) 741
SduI GDGCHC 2 cut(s) 373, 494
SfaNI GCATC 1 cut(s) 184
SfcI CTRYAG 3 cut(s) 297, 420, 838
SinI GGWCC 4 cut(s) 140, 230, 791, 955
SmiMI CAYNNNNRTG 1 cut(s) 32
SmlI CTYRAG 3 cut(s) 441, 487, 733
SmoI CTYRAG 3 cut(s) 441, 487, 733
SphI GCATGC 1 cut(s) 240
Sse9I AATT 3 cut(s) 107, 880, 941
SseBI AGGCCT 1 cut(s) 610
SsiI CCGC 2 cut(s) 437, 708
SspMI CTAG 1 cut(s) 507
StuI AGGCCT 1 cut(s) 610
StyD4I CCNGG 1 cut(s) 739
StyI CCWWGG 3 cut(s) 119, 460, 907
TaaI ACNGT 2 cut(s) 310, 1066
TaiI ACGT 1 cut(s) 394
TaqI TCGA 1 cut(s) 503
TasI AATT 3 cut(s) 107, 880, 941
TatI WGTACW 2 cut(s) 755, 1066
TfiI GAWTC 5 cut(s) 554, 704, 777, 866, 1010
TscAI CASTG 1 cut(s) 649
TseFI GTSAC 2 cut(s) 34, 1044
TseI GCWGC 1 cut(s) 859
Tsp45I GTSAC 2 cut(s) 34, 1044
TspDTI ATGAA 3 cut(s) 24, 236, 653
TspGWI ACGGA 2 cut(s) 252, 1032
TspRI CASTG 1 cut(s) 649
Van91I CCANNNNNTGG 1 cut(s) 894
VpaK11BI GGWCC 4 cut(s) 140, 230, 791, 955
XagI CCTNNNNNAGG 2 cut(s) 321, 336
XapI RAATTY 2 cut(s) 107, 941
XceI RCATGY 4 cut(s) 208, 240, 418, 654
XspI CTAG 1 cut(s) 507
Zsp2I ATGCAT 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.