MD09G1115400.v1.1

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0002970
Physical Location & Seq
Forward (+)
8866907 .. 8871646
4740 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1115400.v1.1.491

Sequence Viewer

Length: 1389 bp
ATGACTTTGGTTGGTGAAGCTGAGAAGAAAAGCAGAGGAAAGCAACACAAAGGGCGGGTGCACGCAAACTCTGTGCTACCACCGATGCCGGACGCTCGGCAGGCTCAGAAGAATGCTATTCCGAATCAATCCGATGGCAACGTGGAAGAGGCATTTTGGAGGTTGACAATCAATGACAATCAAGAACGGGGCGGTGTGGCTCAGGCAAACTTGTACCCTGATCGACCTGGTGAACCTGACTGCATATATTATCTGAGGACTGGTTTGTGTAGTTATGGAAGTAATTGTCGTTTTAATCACCCTAAATATGCTTCGCAGGGTAATCAGTACAATGGAGAACTCCCTGAAAGAGTTGGACAACCTGACTGTGGGTATTTTCTGAAGACAGGAACTTGCAAATATGGATCAACATGTAAATTCCATCATCCAAGAGACAGGCGTGGAGCTGGACCAGTCTTATTCAACGTTTTGGGACTCCCTATGCATCAGGAAGAAAAATCATGTCCTTATTACATGCGAACTGGATCGTGCAAGTTTGGACCTGCCTGCAAGTTTCATCATCCTCAGCCTCAGTCACTTGGCACTGTCTTACCTGCTTTTGGATCTGCGGGTTCAACAGTTGTGCCTTCTTCTGGTGTTCCTTATGTAGGTGGACTTTCTACATGGTCAATTCCAAGAGTGCCATATATATCAGGCCCGCGTTTACAAACTCCACAGTCTTACATGCCTGTTGTTCTTCCTCCCCAAGGCATTGTACCGGCCCATGGATGGAACACATATGTGGGAAACCTGAGCCCTGTATCTTCCACTGGTATTCTTGGATCCAACCTCACATACAACTCTAGTACTCGTGGGGAGTCAGCTTCCAACGGGCAGGTTCACTTGTCAAGTCCATGTCTACCCCAGAGGCCTGATCAACCTGAATGCCGGTACTTTATGAACACTGGGACTTGCAAATATGGAATAGATTGCAAGTACCACCACCCAAAAGAAAGGATTGCAGAATCTGCTACAACCCCACTCGGGCTTCCCTCGAGACCTGGGCAACCTGTATGCTCATTCTACCTTATGTATGGAATCTGCAAGTACGGACCAACTTGCAGATTTGATCATCCCTACATGGAACAATCTGCTAGCTATAATTTCGGAATGCAGGCATTGCCCATGCTTGATTCATCTCTCATAAGTTATCCAAGAAGCTGGTCAGTGGCTAATGGACTAGAGACATCCCCCTCCATACCACCAAAATTCCCCAATGGAGTCAAAAAACCGGCGAGCAACAAATATGAAAACTCTGATACAAAGATTTCAGAAGATTCCCCGGAACAAGCGGGTTCTATGTCACCTTCTCCAACATCCTCAGAACCTGTACAAGACCAGTCTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

463

Amino Acids

50.43

Weight (kDa)

8.74

Isoelectric Point (pI)

55.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH PF00642 76 - 102 5.6e-10 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 120 - 144 9.8e-10 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 166 - 189 4.8e-10 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 305 - 330 1.6e-09 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 347 - 372 1e-08 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 550, 601, 865
AccI GTMKAC 1 cut(s) 898
AccII CGCG 1 cut(s) 700
AciI CCGC 5 cut(s) 55, 192, 608, 698, 1331
AclI AACGTT 1 cut(s) 465
AclWI GGATC 5 cut(s) 412, 532, 610, 816, 829
AcsI RAATTY 2 cut(s) 416, 1247
AcuI CTGAAG 1 cut(s) 401
AfaI GTAC 8 cut(s) 215, 329, 756, 847, 932, 977, 1088, 1371
AfiI CCNNNNNNNGG 8 cut(s) 368, 599, 632, 647, 746, 764, 768, 1023
AflIII ACRYGT 1 cut(s) 410
AgsI TTSAA 2 cut(s) 463, 615
AjnI CCWGG 2 cut(s) 226, 1039
AleI CACNNNNGTG 1 cut(s) 779
AluBI AGCT 5 cut(s) 20, 446, 863, 1137, 1200
AluI AGCT 5 cut(s) 20, 446, 863, 1137, 1200
Alw21I GWGCWC 1 cut(s) 63
Alw26I GTCTC 3 cut(s) 426, 1030, 1217
Alw44I GTGCAC 1 cut(s) 59
AlwI GGATC 5 cut(s) 412, 532, 610, 816, 829
AlwNI CAGNNNCTG 2 cut(s) 1007, 1367
Ama87I CYCGRG 2 cut(s) 1022, 1033
AoxI GGCC 3 cut(s) 694, 759, 908
ApaLI GTGCAC 1 cut(s) 59
ApoI RAATTY 2 cut(s) 416, 1247
AspS9I GGNCC 5 cut(s) 449, 539, 695, 760, 1091
AsuC2I CCSGG 1 cut(s) 1322
AsuHPI GGTGA 4 cut(s) 26, 242, 290, 1335
AsuNHI GCTAGC 1 cut(s) 1133
AvaI CYCGRG 2 cut(s) 1022, 1033
AvaII GGWCC 3 cut(s) 449, 539, 1091
BaeGI GKGCMC 1 cut(s) 63
BamHI GGATCC 1 cut(s) 821
BanII GRGCYC 1 cut(s) 797
BauI CACGAG 1 cut(s) 849
BbsI GAAGAC 1 cut(s) 389
Bbv12I GWGCWC 1 cut(s) 63
BbvCI CCTCAGC 1 cut(s) 564
BccI CCATC 3 cut(s) 128, 429, 762
BciT130I CCWGG 2 cut(s) 228, 1041
BclI TGATCA 2 cut(s) 913, 1108
BcnI CCSGG 1 cut(s) 1322
BcoDI GTCTC 3 cut(s) 426, 1030, 1217
BfaI CTAG 3 cut(s) 843, 1134, 1220
BfuAI ACCTGC 3 cut(s) 550, 601, 865
BmcAI AGTACT 1 cut(s) 847
Bme1390I CCNGG 3 cut(s) 228, 1041, 1322
Bme18I GGWCC 3 cut(s) 449, 539, 1091
BmeT110I CYCGRG 2 cut(s) 1022, 1033
BmgT120I GGNCC 5 cut(s) 449, 539, 695, 760, 1091
BmiI GGNNCC 1 cut(s) 823
BmrFI CCNGG 3 cut(s) 228, 1041, 1322
BmrI ACTGGG 1 cut(s) 954
BmsI GCATC 2 cut(s) 75, 493
BmtI GCTAGC 1 cut(s) 1137
BmuI ACTGGG 1 cut(s) 954
BpiI GAAGAC 1 cut(s) 389
Bpu10I CCTNAGC 3 cut(s) 201, 564, 791
BpuMI CCSGG 1 cut(s) 1322
BsaI GGTCTC 1 cut(s) 1030
BsaJI CCNNGG 4 cut(s) 745, 763, 1040, 1320
Bsc4I CCNNNNNNNGG 8 cut(s) 368, 599, 632, 647, 746, 764, 768, 1023
Bse118I RCCGGY 3 cut(s) 757, 927, 1270
Bse1I ACTGG 6 cut(s) 265, 452, 526, 814, 949, 1378
Bse3DI GCAATG 1 cut(s) 1157
BseBI CCWGG 2 cut(s) 228, 1041
BseDI CCNNGG 4 cut(s) 745, 763, 1040, 1320
BseGI GGATG 6 cut(s) 424, 559, 773, 1111, 1226, 1355
BseLI CCNNNNNNNGG 8 cut(s) 368, 599, 632, 647, 746, 764, 768, 1023
BseMI GCAATG 1 cut(s) 1157
BseMII CTCAG 8 cut(s) 12, 119, 215, 245, 578, 584, 782, 1374
BseNI ACTGG 6 cut(s) 265, 452, 526, 814, 949, 1378
BseSI GKGCMC 1 cut(s) 63
Bsh1236I CGCG 1 cut(s) 700
BshFI GGCC 3 cut(s) 696, 761, 910
BsiHKAI GWGCWC 1 cut(s) 63
BsiHKCI CYCGRG 2 cut(s) 1022, 1033
BsiSI CCGG 5 cut(s) 89, 758, 928, 1271, 1322
BslFI GGGAC 2 cut(s) 486, 961
BslI CCNNNNNNNGG 8 cut(s) 368, 599, 632, 647, 746, 764, 768, 1023
BsmAI GTCTC 3 cut(s) 426, 1030, 1217
BsmFI GGGAC 2 cut(s) 486, 961
BsmI GAATGC 3 cut(s) 118, 929, 1155
BsnI GGCC 3 cut(s) 696, 761, 910
Bso31I GGTCTC 1 cut(s) 1030
BsoBI CYCGRG 2 cut(s) 1022, 1033
Bsp1286I GDGCHC 2 cut(s) 63, 797
Bsp1407I TGTACA 1 cut(s) 1369
Bsp143I GATC 7 cut(s) 220, 404, 524, 602, 821, 913, 1108
Bsp19I CCATGG 1 cut(s) 763
BspACI CCGC 5 cut(s) 55, 192, 608, 698, 1331
BspANI GGCC 3 cut(s) 696, 761, 910
BspCNI CTCAG 8 cut(s) 13, 118, 214, 246, 577, 583, 783, 1373
BspFNI CGCG 1 cut(s) 700
BspLI GGNNCC 1 cut(s) 823
BspMI ACCTGC 3 cut(s) 550, 601, 865
BspOI GCTAGC 1 cut(s) 1137
BspPI GGATC 5 cut(s) 412, 532, 610, 816, 829
BspTNI GGTCTC 1 cut(s) 1030
BsrDI GCAATG 1 cut(s) 1157
BsrFI RCCGGY 3 cut(s) 757, 927, 1270
BsrGI TGTACA 1 cut(s) 1369
BsrI ACTGG 6 cut(s) 265, 452, 526, 814, 949, 1378
BssAI RCCGGY 3 cut(s) 757, 927, 1270
BssECI CCNNGG 4 cut(s) 745, 763, 1040, 1320
BssMI GATC 7 cut(s) 220, 404, 524, 602, 821, 913, 1108
BssSI CACGAG 1 cut(s) 849
BssT1I CCWWGG 2 cut(s) 745, 763
Bst2BI CACGAG 1 cut(s) 849
Bst2UI CCWGG 2 cut(s) 228, 1041
Bst4CI ACNGT 4 cut(s) 368, 586, 619, 717
Bst6I CTCTTC 1 cut(s) 141
BstAPI GCANNNNNTGC 2 cut(s) 1007, 1159
BstAUI TGTACA 1 cut(s) 1369
BstC8I GCNNGC 7 cut(s) 63, 102, 547, 698, 1135, 1155, 1276
BstDEI CTNAG 8 cut(s) 21, 105, 201, 254, 564, 570, 791, 1360
BstDSI CCRYGG 1 cut(s) 763
BstENI CCTNNNNNAGG 2 cut(s) 645, 744
BstF5I GGATG 6 cut(s) 424, 559, 773, 1111, 1226, 1355
BstFNI CGCG 1 cut(s) 700
BstKTI GATC 7 cut(s) 223, 407, 527, 605, 824, 916, 1111
BstMAI GTCTC 3 cut(s) 426, 1030, 1217
BstMBI GATC 7 cut(s) 220, 404, 524, 602, 821, 913, 1108
BstMWI GCNNNNNNNGC 3 cut(s) 101, 1007, 1159
BstNI CCWGG 2 cut(s) 228, 1041
BstNSI RCATGY 3 cut(s) 414, 517, 727
BstSCI CCNGG 3 cut(s) 226, 1039, 1320
BstSLI GKGCMC 1 cut(s) 63
BstUI CGCG 1 cut(s) 700
BstV2I GAAGAC 1 cut(s) 389
BstX2I RGATCY 2 cut(s) 602, 821
BstXI CCANNNNNNTGG 1 cut(s) 1200
BstYI RGATCY 2 cut(s) 602, 821
BsuRI GGCC 3 cut(s) 696, 761, 910
BtgI CCRYGG 1 cut(s) 763
BtsCI GGATG 6 cut(s) 424, 559, 773, 1111, 1226, 1355
BtsIMutI CAGTG 4 cut(s) 582, 807, 942, 1212
BveI ACCTGC 3 cut(s) 550, 601, 865
Cac8I GCNNGC 7 cut(s) 63, 102, 547, 698, 1135, 1155, 1276
CaiI CAGNNNCTG 2 cut(s) 1007, 1367
Cfr10I RCCGGY 3 cut(s) 757, 927, 1270
Cfr13I GGNCC 5 cut(s) 449, 539, 695, 760, 1091
CseI GACGC 1 cut(s) 101
CsiI ACCWGGT 1 cut(s) 226
Csp6I GTAC 8 cut(s) 214, 328, 755, 846, 931, 976, 1087, 1370
CviAII CATG 9 cut(s) 411, 501, 514, 663, 724, 764, 894, 1120, 1165
CviQI GTAC 8 cut(s) 214, 328, 755, 846, 931, 976, 1087, 1370
DdeI CTNAG 8 cut(s) 21, 105, 201, 254, 564, 570, 791, 1360
DpnI GATC 7 cut(s) 222, 406, 526, 604, 823, 915, 1110
DpnII GATC 7 cut(s) 220, 404, 524, 602, 821, 913, 1108
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
Eco130I CCWWGG 2 cut(s) 745, 763
Eco147I AGGCCT 1 cut(s) 910
Eco24I GRGCYC 1 cut(s) 797
Eco31I GGTCTC 1 cut(s) 1030
Eco47I GGWCC 3 cut(s) 449, 539, 1091
Eco57I CTGAAG 1 cut(s) 401
Eco88I CYCGRG 2 cut(s) 1022, 1033
EcoNI CCTNNNNNAGG 2 cut(s) 645, 744
EcoRII CCWGG 2 cut(s) 226, 1039
EcoT14I CCWWGG 2 cut(s) 745, 763
EcoT22I ATGCAT 1 cut(s) 486
EcoT38I GRGCYC 1 cut(s) 797
ErhI CCWWGG 2 cut(s) 745, 763
FaeI CATG 9 cut(s) 414, 504, 517, 666, 727, 767, 897, 1123, 1168
FaqI GGGAC 2 cut(s) 486, 961
FatI CATG 9 cut(s) 410, 500, 513, 662, 723, 763, 893, 1119, 1164
FauI CCCGC 4 cut(s) 48, 601, 705, 1324
FauNDI CATATG 1 cut(s) 778
FbaI TGATCA 2 cut(s) 913, 1108
FblI GTMKAC 1 cut(s) 898
FokI GGATG 6 cut(s) 411, 546, 780, 1098, 1213, 1342
FriOI GRGCYC 1 cut(s) 797
FspBI CTAG 3 cut(s) 843, 1134, 1220
HaeIII GGCC 3 cut(s) 696, 761, 910
HapII CCGG 5 cut(s) 89, 758, 928, 1271, 1322
HgaI GACGC 1 cut(s) 101
Hin1II CATG 9 cut(s) 414, 504, 517, 666, 727, 767, 897, 1123, 1168
HincII GTYRAC 1 cut(s) 165
HindII GTYRAC 1 cut(s) 165
HinfI GANTC 8 cut(s) 124, 474, 857, 1004, 1077, 1172, 1260, 1316
HpaII CCGG 5 cut(s) 89, 758, 928, 1271, 1322
HphI GGTGA 4 cut(s) 26, 242, 290, 1335
Hpy166II GTNNAC 7 cut(s) 61, 165, 233, 653, 704, 880, 899
Hpy188I TCNGA 9 cut(s) 108, 123, 133, 255, 381, 1148, 1297, 1312, 1363
Hpy188III TCNNGA 3 cut(s) 182, 488, 1035
Hpy8I GTNNAC 7 cut(s) 61, 165, 233, 653, 704, 880, 899
HpyAV CCTTC 2 cut(s) 636, 1356
HpyCH4III ACNGT 4 cut(s) 368, 586, 619, 717
HpyCH4IV ACGT 2 cut(s) 141, 465
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 1007, 1159
HpyF3I CTNAG 8 cut(s) 21, 105, 201, 254, 564, 570, 791, 1360
HpySE526I ACGT 2 cut(s) 141, 465
Hsp92II CATG 9 cut(s) 414, 504, 517, 666, 727, 767, 897, 1123, 1168
Ksp22I TGATCA 2 cut(s) 913, 1108
Kzo9I GATC 7 cut(s) 220, 404, 524, 602, 821, 913, 1108
LmnI GCTCC 1 cut(s) 443
LweI GCATC 2 cut(s) 75, 493
MabI ACCWGGT 1 cut(s) 226
MaeI CTAG 3 cut(s) 843, 1134, 1220
MaeII ACGT 2 cut(s) 141, 465
MaeIII GTNAC 2 cut(s) 573, 1341
MalI GATC 7 cut(s) 222, 406, 526, 604, 823, 915, 1110
MboI GATC 7 cut(s) 220, 404, 524, 602, 821, 913, 1108
MboII GAAGA 9 cut(s) 37, 121, 158, 394, 503, 621, 728, 795, 1325
MflI RGATCY 2 cut(s) 602, 821
MhlI GDGCHC 2 cut(s) 63, 797
MluCI AATT 5 cut(s) 283, 416, 669, 1141, 1247
MlyI GAGTC 3 cut(s) 468, 866, 1269
MmeI TCCRAC 4 cut(s) 334, 849, 891, 1376
Mph1103I ATGCAT 1 cut(s) 486
MseI TTAA 2 cut(s) 294, 1387
MslI CAYNNNNRTG 1 cut(s) 779
MspI CCGG 5 cut(s) 89, 758, 928, 1271, 1322
MspR9I CCNGG 3 cut(s) 228, 1041, 1322
Mva1269I GAATGC 3 cut(s) 118, 929, 1155
MvaI CCWGG 2 cut(s) 228, 1041
MvnI CGCG 1 cut(s) 700
MwoI GCNNNNNNNGC 3 cut(s) 101, 1007, 1159
NciI CCSGG 1 cut(s) 1322
NcoI CCATGG 1 cut(s) 763
NdeI CATATG 1 cut(s) 778
NdeII GATC 7 cut(s) 220, 404, 524, 602, 821, 913, 1108
NheI GCTAGC 1 cut(s) 1133
NlaIII CATG 9 cut(s) 414, 504, 517, 666, 727, 767, 897, 1123, 1168
NlaIV GGNNCC 1 cut(s) 823
NmeAIII GCCGAG 1 cut(s) 76
NmuCI GTSAC 2 cut(s) 573, 1341
NsiI ATGCAT 1 cut(s) 486
NspI RCATGY 3 cut(s) 414, 517, 727
OliI CACNNNNGTG 1 cut(s) 779
PaeR7I CTCGAG 1 cut(s) 1033
PceI AGGCCT 1 cut(s) 910
PciI ACATGT 1 cut(s) 410
PctI GAATGC 3 cut(s) 118, 929, 1155
PfeI GAWTC 5 cut(s) 124, 1004, 1077, 1172, 1316
PleI GAGTC 3 cut(s) 468, 865, 1268
PpsI GAGTC 3 cut(s) 468, 865, 1268
PscI ACATGT 1 cut(s) 410
Psp1406I AACGTT 1 cut(s) 465
Psp6I CCWGG 2 cut(s) 226, 1039
PspGI CCWGG 2 cut(s) 226, 1039
PspN4I GGNNCC 1 cut(s) 823
PspPI GGNCC 5 cut(s) 449, 539, 695, 760, 1091
PstNI CAGNNNCTG 2 cut(s) 1007, 1367
PsuI RGATCY 2 cut(s) 602, 821
RsaI GTAC 8 cut(s) 215, 329, 756, 847, 932, 977, 1088, 1371
RsaNI GTAC 8 cut(s) 214, 328, 755, 846, 931, 976, 1087, 1370
RseI CAYNNNNRTG 1 cut(s) 779
SaqAI TTAA 2 cut(s) 294, 1387
Sau3AI GATC 7 cut(s) 220, 404, 524, 602, 821, 913, 1108
Sau96I GGNCC 5 cut(s) 449, 539, 695, 760, 1091
ScaI AGTACT 1 cut(s) 847
SchI GAGTC 3 cut(s) 468, 866, 1269
ScrFI CCNGG 3 cut(s) 228, 1041, 1322
SduI GDGCHC 2 cut(s) 63, 797
SexAI ACCWGGT 1 cut(s) 226
SfaNI GCATC 2 cut(s) 75, 493
Sfr274I CTCGAG 1 cut(s) 1033
SinI GGWCC 3 cut(s) 449, 539, 1091
SlaI CTCGAG 1 cut(s) 1033
SmiMI CAYNNNNRTG 1 cut(s) 779
SmlI CTYRAG 1 cut(s) 1033
SmoI CTYRAG 1 cut(s) 1033
Sse9I AATT 5 cut(s) 283, 416, 669, 1141, 1247
SseBI AGGCCT 1 cut(s) 910
SsiI CCGC 5 cut(s) 55, 192, 608, 698, 1331
SspMI CTAG 3 cut(s) 843, 1134, 1220
StuI AGGCCT 1 cut(s) 910
StyD4I CCNGG 3 cut(s) 226, 1039, 1320
StyI CCWWGG 2 cut(s) 745, 763
TaaI ACNGT 4 cut(s) 368, 586, 619, 717
TaiI ACGT 2 cut(s) 144, 468
TaqI TCGA 2 cut(s) 223, 1034
TasI AATT 5 cut(s) 283, 416, 669, 1141, 1247
TatI WGTACW 3 cut(s) 327, 845, 1369
TfiI GAWTC 5 cut(s) 124, 1004, 1077, 1172, 1316
Tru1I TTAA 2 cut(s) 294, 1387
Tru9I TTAA 2 cut(s) 294, 1387
TscAI CASTG 4 cut(s) 589, 814, 949, 1212
TseFI GTSAC 2 cut(s) 573, 1341
Tsp45I GTSAC 2 cut(s) 573, 1341
TspDTI ATGAA 4 cut(s) 545, 953, 1164, 1302
TspGWI ACGGA 1 cut(s) 1104
TspRI CASTG 4 cut(s) 589, 814, 949, 1212
VneI GTGCAC 1 cut(s) 59
VpaK11BI GGWCC 3 cut(s) 449, 539, 1091
XagI CCTNNNNNAGG 2 cut(s) 645, 744
XapI RAATTY 2 cut(s) 416, 1247
XceI RCATGY 3 cut(s) 414, 517, 727
XhoI CTCGAG 1 cut(s) 1033
XmiI GTMKAC 1 cut(s) 898
XspI CTAG 3 cut(s) 843, 1134, 1220
ZrmI AGTACT 1 cut(s) 847
Zsp2I ATGCAT 1 cut(s) 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.