Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002970

Physical Location & Seq

Genomic Coordinates Reverse (-)

8188830 .. 8191604

Gene Structure 2775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g13621.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGTTTATGATCCTTCCAGCAGGCTTTCATCTTGGGTGGGTCTGGATTGCTGTCGATGGAAAGGGATTTCATGCAGCAACCGTACAGGTCACGTTGCAAAGATGGACCTCCCAAACCCGAATTACGATCAAGAGAATGGCTTCAAACGCTCCTCTGAAGGTTCCACTTGCTGCTCCAAGTGAGTCCCTTCCTGAAAGACCTGGAGCGCCAGATTGTCCATACTTTCTGAAAACTCAAAGATGCAAGTTTGGTCTTAAATGCAAGTTTAATCATCCAAAGGACAAACTGGCTACTGCGGGTGCTTCGGAAAATGGTGATGTTAATGCCCTACCTGAGAGGCCTTCTGAACCCCCATGTGCATTCTACTTGAAAACTGGGCAATGCAAGTATGGTGCAACCTGCAAATTTAATCACCCAAAAGACATCCAGATACCATCAACCACTCAAGAGAATAAATCTGCCGAAACTGAGACAGCTCTTAAGACGGAGAGCAGTGAAGTTGCTGTGAAGCCTCTTGTTTCATTCACTCCAGCACTATTATATAATTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001709 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0032502 GO:0034248 GO:0034249 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045165 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048869 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:1903311 GO:1903313 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

184

Amino Acids

20.07

Weight (kDa)

9.15

Isoelectric Point (pI)

39.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	68 - 93	1.1e-08	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_DUS3L	PF25585	70 - 91	8.7e-06	DUS3L CCCH zinc finger domain
zf-CCCH	PF00642	115 - 140	5.2e-11	Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04990 AT1G04990 AT1G04990 AT1G04990 AT1G04990 AT1G04990 AT2G32930 AT2G32930 AT2G32930
fragaria_vesca	FvH4_3g13621 FvH4_6g42010 FvH4_6g42010
malus_domestica	MD03G1135600.v1.1 MD03G1279200.v1.1 MD03G1279800.v1.1 MD05G1053000.v1.1 MD06G1100700.v1.1 MD09G1115400.v1.1 MD10G1110500.v1.1 MD17G1107000.v1.1
prunus_persica	Prupe.3G209200_v2.0.a1 Prupe.3G209200_v2.0.a1
pyrus_communis	pycom09g03970 pycom09g03980 pycom17g09960
rosa_chinensis	RchiOBHm_Chr2g0157941
rosa_laevigata	RLG00000021036
rosa_multiflora	Rmu_sc0011758.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091850
rosa_rugosa	Rorug01G0068500 Rorug02G0304500.1 Rorug02G0464400
rosa_samantha	Rh2AG529800 Rh2BG544500 Rh2CG514200 Rh2DG552800 Rh5BG160500
rosa_wichuraiana	Rw2G043860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	407
AciI	CCGC	1 cut(s)	296
AclWI	GGATC	1 cut(s)	4
AcsI	RAATTY	1 cut(s)	404
AcuI	CTGAAG	1 cut(s)	176
AfaI	GTAC	1 cut(s)	84
AflII	CTTAAG	1 cut(s)	479
AgsI	TTSAA	2 cut(s)	144, 370
AjnI	CCWGG	1 cut(s)	199
AluBI	AGCT	1 cut(s)	476
AluI	AGCT	1 cut(s)	476
Alw26I	GTCTC	1 cut(s)	464
AlwI	GGATC	1 cut(s)	4
AoxI	GGCC	1 cut(s)	338
ApeKI	GCWGC	2 cut(s)	74, 170
ApoI	RAATTY	1 cut(s)	404
Asp700I	GAANNNNTTC	1 cut(s)	139
AspLEI	GCGC	1 cut(s)	208
AspS9I	GGNCC	1 cut(s)	105
AsuHPI	GGTGA	2 cut(s)	326, 404
AvaII	GGWCC	1 cut(s)	105
BbvI	GCAGC	2 cut(s)	86, 157
BccI	CCATC	3 cut(s)	50, 96, 442
BciT130I	CCWGG	1 cut(s)	201
BcoDI	GTCTC	1 cut(s)	464
BfoI	RGCGCY	1 cut(s)	209
BfrI	CTTAAG	1 cut(s)	479
BfuAI	ACCTGC	1 cut(s)	407
BisI	GCNGC	2 cut(s)	75, 171
BlsI	GCNGC	2 cut(s)	76, 172
Bme1390I	CCNGG	1 cut(s)	201
Bme18I	GGWCC	1 cut(s)	105
BmgT120I	GGNCC	1 cut(s)	105
BmiI	GGNNCC	1 cut(s)	162
BmrFI	CCNGG	1 cut(s)	201
BmrI	ACTGGG	1 cut(s)	384
BmsI	GCATC	1 cut(s)	230
BmuI	ACTGGG	1 cut(s)	384
BpmI	CTGGAG	2 cut(s)	222, 513
BpuEI	CTTGAG	1 cut(s)	429
Bse1I	ACTGG	2 cut(s)	291, 379
Bse3DI	GCAATG	1 cut(s)	386
BseBI	CCWGG	1 cut(s)	201
BseGI	GGATG	2 cut(s)	271, 423
BseMI	GCAATG	1 cut(s)	386
BseMII	CTCAG	2 cut(s)	324, 459
BseNI	ACTGG	2 cut(s)	291, 379
BseRI	GAGGAG	1 cut(s)	141
BseXI	GCAGC	2 cut(s)	86, 157
BshFI	GGCC	1 cut(s)	340
BslFI	GGGAC	1 cut(s)	169
BsmAI	GTCTC	1 cut(s)	464
BsmFI	GGGAC	1 cut(s)	169
BsmI	GAATGC	1 cut(s)	359
BsnI	GGCC	1 cut(s)	340
Bsp143I	GATC	2 cut(s)	9, 126
BspACI	CCGC	1 cut(s)	296
BspANI	GGCC	1 cut(s)	340
BspCNI	CTCAG	2 cut(s)	325, 460
BspLI	GGNNCC	1 cut(s)	162
BspMI	ACCTGC	1 cut(s)	407
BspPI	GGATC	1 cut(s)	4
BspTI	CTTAAG	1 cut(s)	479
BsrDI	GCAATG	1 cut(s)	386
BsrI	ACTGG	2 cut(s)	291, 379
BssMI	GATC	2 cut(s)	9, 126
Bst2UI	CCWGG	1 cut(s)	201
Bst4CI	ACNGT	1 cut(s)	82
BstAFI	CTTAAG	1 cut(s)	479
BstC8I	GCNNGC	1 cut(s)	22
BstDEI	CTNAG	2 cut(s)	333, 468
BstF5I	GGATG	2 cut(s)	271, 423
BstH2I	RGCGCY	1 cut(s)	209
BstHHI	GCGC	1 cut(s)	208
BstKTI	GATC	2 cut(s)	12, 129
BstMAI	GTCTC	1 cut(s)	464
BstMBI	GATC	2 cut(s)	9, 126
BstMWI	GCNNNNNNNGC	1 cut(s)	146
BstNI	CCWGG	1 cut(s)	201
BstSCI	CCNGG	1 cut(s)	199
BstV1I	GCAGC	2 cut(s)	86, 157
BsuRI	GGCC	1 cut(s)	340
BtsCI	GGATG	2 cut(s)	271, 423
BtsI	GCAGTG	1 cut(s)	499
BtsIMutI	CAGTG	1 cut(s)	499
BveI	ACCTGC	1 cut(s)	407
Cac8I	GCNNGC	1 cut(s)	22
CfoI	GCGC	1 cut(s)	208
Cfr13I	GGNCC	1 cut(s)	105
Csp6I	GTAC	1 cut(s)	83
CviAII	CATG	2 cut(s)	71, 354
CviJI	RGCY	6 cut(s)	24, 140, 290, 340, 476, 511
CviKI_1	RGCY	6 cut(s)	24, 140, 290, 340, 476, 511
CviQI	GTAC	1 cut(s)	83
DdeI	CTNAG	2 cut(s)	333, 468
DpnI	GATC	2 cut(s)	11, 128
DpnII	GATC	2 cut(s)	9, 126
Eco147I	AGGCCT	1 cut(s)	340
Eco47I	GGWCC	1 cut(s)	105
Eco57I	CTGAAG	1 cut(s)	176
EcoRII	CCWGG	1 cut(s)	199
FaeI	CATG	2 cut(s)	74, 357
FaiI	YATR	7 cut(s)	8, 72, 220, 355, 390, 541, 543
FaqI	GGGAC	1 cut(s)	169
FatI	CATG	2 cut(s)	70, 353
FauI	CCCGC	1 cut(s)	289
Fnu4HI	GCNGC	2 cut(s)	75, 171
FokI	GGATG	2 cut(s)	258, 410
Fsp4HI	GCNGC	2 cut(s)	75, 171
GlaI	GCGC	1 cut(s)	207
GluI	GCNGC	2 cut(s)	75, 171
GsuI	CTGGAG	2 cut(s)	222, 513
HaeII	RGCGCY	1 cut(s)	209
HaeIII	GGCC	1 cut(s)	340
HhaI	GCGC	1 cut(s)	208
Hin1II	CATG	2 cut(s)	74, 357
Hin6I	GCGC	1 cut(s)	206
HinP1I	GCGC	1 cut(s)	206
HinfI	GANTC	1 cut(s)	182
HphI	GGTGA	2 cut(s)	326, 404
Hpy188I	TCNGA	4 cut(s)	156, 228, 307, 346
Hpy188III	TCNNGA	5 cut(s)	43, 130, 191, 427, 446
HpyAV	CCTTC	4 cut(s)	23, 151, 197, 351
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4IV	ACGT	1 cut(s)	92
HpyCH4V	TGCA	8 cut(s)	74, 97, 243, 261, 359, 384, 395, 402
HpyF10VI	GCNNNNNNNGC	1 cut(s)	146
HpyF3I	CTNAG	2 cut(s)	333, 468
HpySE526I	ACGT	1 cut(s)	92
Hsp92II	CATG	2 cut(s)	74, 357
HspAI	GCGC	1 cut(s)	206
Kzo9I	GATC	2 cut(s)	9, 126
LmnI	GCTCC	3 cut(s)	154, 178, 203
Lsp1109I	GCAGC	2 cut(s)	86, 157
LweI	GCATC	1 cut(s)	230
MaeII	ACGT	1 cut(s)	92
MaeIII	GTNAC	1 cut(s)	88
MalI	GATC	2 cut(s)	11, 128
MboI	GATC	2 cut(s)	9, 126
MluCI	AATT	3 cut(s)	120, 404, 544
MlyI	GAGTC	1 cut(s)	191
MnlI	CCTC	4 cut(s)	118, 162, 330, 522
MroXI	GAANNNNTTC	1 cut(s)	139
MseI	TTAA	5 cut(s)	255, 267, 321, 408, 480
MspCI	CTTAAG	1 cut(s)	479
MspR9I	CCNGG	1 cut(s)	201
Mva1269I	GAATGC	1 cut(s)	359
MvaI	CCWGG	1 cut(s)	201
MwoI	GCNNNNNNNGC	1 cut(s)	146
NdeII	GATC	2 cut(s)	9, 126
NlaIII	CATG	2 cut(s)	74, 357
NlaIV	GGNNCC	1 cut(s)	162
NmuCI	GTSAC	1 cut(s)	88
PceI	AGGCCT	1 cut(s)	340
PctI	GAATGC	1 cut(s)	359
PdmI	GAANNNNTTC	1 cut(s)	139
PkrI	GCNGC	2 cut(s)	76, 172
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
Psp6I	CCWGG	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	199
PspN4I	GGNNCC	1 cut(s)	162
PspPI	GGNCC	1 cut(s)	105
RsaI	GTAC	1 cut(s)	84
RsaNI	GTAC	1 cut(s)	83
SaqAI	TTAA	5 cut(s)	255, 267, 321, 408, 480
SatI	GCNGC	2 cut(s)	75, 171
Sau3AI	GATC	2 cut(s)	9, 126
Sau96I	GGNCC	1 cut(s)	105
SchI	GAGTC	1 cut(s)	191
ScrFI	CCNGG	1 cut(s)	201
SetI	ASST	8 cut(s)	90, 95, 110, 162, 202, 334, 401, 478
SfaNI	GCATC	1 cut(s)	230
SinI	GGWCC	1 cut(s)	105
SmlI	CTYRAG	2 cut(s)	444, 479
SmoI	CTYRAG	2 cut(s)	444, 479
Sse9I	AATT	3 cut(s)	120, 404, 544
SseBI	AGGCCT	1 cut(s)	340
SsiI	CCGC	1 cut(s)	296
StuI	AGGCCT	1 cut(s)	340
StyD4I	CCNGG	1 cut(s)	199
TaaI	ACNGT	1 cut(s)	82
TaiI	ACGT	1 cut(s)	95
TaqI	TCGA	1 cut(s)	54
TasI	AATT	3 cut(s)	120, 404, 544
Tru1I	TTAA	5 cut(s)	255, 267, 321, 408, 480
Tru9I	TTAA	5 cut(s)	255, 267, 321, 408, 480
TscAI	CASTG	1 cut(s)	499
TseFI	GTSAC	1 cut(s)	88
TseI	GCWGC	2 cut(s)	74, 170
Tsp45I	GTSAC	1 cut(s)	88
TspDTI	ATGAA	3 cut(s)	17, 59, 510
TspGWI	ACGGA	1 cut(s)	500
TspRI	CASTG	1 cut(s)	499
Vha464I	CTTAAG	1 cut(s)	479
VpaK11BI	GGWCC	1 cut(s)	105
XapI	RAATTY	1 cut(s)	404
XmnI	GAANNNNTTC	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.