MD06G1100700.v1.1

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0002970
Physical Location & Seq
Forward (+)
23719788 .. 23719946
159 bp
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UTR
Exon/CDS
Intron
MD06G1100700.v1.1.491

Sequence Viewer

Length: 159 bp
ATGTGGCAATTGGGGCTAACAAGCAGCGAATCGTGCCCGGAGAGACCCGGCGTGCCCAACTGTGTCTACTACATGCGAACCGGGTTCTGTGGATACGGTGGTCGGTGCCAGTACAACCATCCTCGTGATCGTGGTGCGGTAAGTCCTTGTTCGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

53

Amino Acids

5.79

Weight (kDa)

8.37

Isoelectric Point (pI)

42.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH PF00642 17 - 42 1.3e-09 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 105
AccI GTMKAC 1 cut(s) 66
AciI CCGC 1 cut(s) 137
AfaI GTAC 1 cut(s) 113
Alw26I GTCTC 1 cut(s) 37
ApeKI GCWGC 1 cut(s) 24
AsuC2I CCSGG 3 cut(s) 38, 48, 82
BaeGI GKGCMC 2 cut(s) 38, 57
BaeI ACNNNNGTAYC 2 cut(s) 85, 118
BanI GGYRCC 1 cut(s) 105
BauI CACGAG 1 cut(s) 123
BbvI GCAGC 1 cut(s) 36
BccI CCATC 1 cut(s) 126
BciVI GTATCC 1 cut(s) 86
BcnI CCSGG 3 cut(s) 38, 48, 82
BcoDI GTCTC 1 cut(s) 37
BfuI GTATCC 1 cut(s) 86
BisI GCNGC 1 cut(s) 25
BlsI GCNGC 1 cut(s) 26
Bme1390I CCNGG 3 cut(s) 38, 48, 82
BmiI GGNNCC 1 cut(s) 107
BmrFI CCNGG 3 cut(s) 38, 48, 82
BpuMI CCSGG 3 cut(s) 38, 48, 82
BsaI GGTCTC 1 cut(s) 37
Bse1I ACTGG 1 cut(s) 109
BseGI GGATG 1 cut(s) 118
BseNI ACTGG 1 cut(s) 109
BseSI GKGCMC 2 cut(s) 38, 57
BseXI GCAGC 1 cut(s) 36
BshNI GGYRCC 1 cut(s) 105
BsiSI CCGG 3 cut(s) 38, 48, 81
BsmAI GTCTC 1 cut(s) 37
Bso31I GGTCTC 1 cut(s) 37
Bsp1286I GDGCHC 2 cut(s) 38, 57
Bsp143I GATC 1 cut(s) 127
BspACI CCGC 1 cut(s) 137
BspLI GGNNCC 1 cut(s) 107
BspT107I GGYRCC 1 cut(s) 105
BspTNI GGTCTC 1 cut(s) 37
BsrI ACTGG 1 cut(s) 109
BssMI GATC 1 cut(s) 127
BssSI CACGAG 1 cut(s) 123
Bst2BI CACGAG 1 cut(s) 123
Bst4CI ACNGT 2 cut(s) 62, 98
BstC8I GCNNGC 1 cut(s) 53
BstF5I GGATG 1 cut(s) 118
BstKTI GATC 1 cut(s) 130
BstMAI GTCTC 1 cut(s) 37
BstMBI GATC 1 cut(s) 127
BstMWI GCNNNNNNNGC 2 cut(s) 13, 33
BstNSI RCATGY 1 cut(s) 76
BstSCI CCNGG 3 cut(s) 36, 46, 80
BstSLI GKGCMC 2 cut(s) 38, 57
BstV1I GCAGC 1 cut(s) 36
BsuI GTATCC 1 cut(s) 86
BtsCI GGATG 1 cut(s) 118
Cac8I GCNNGC 1 cut(s) 53
Csp6I GTAC 1 cut(s) 112
CviAII CATG 1 cut(s) 73
CviJI RGCY 1 cut(s) 16
CviKI_1 RGCY 1 cut(s) 16
CviQI GTAC 1 cut(s) 112
DpnI GATC 1 cut(s) 129
DpnII GATC 1 cut(s) 127
Eco31I GGTCTC 1 cut(s) 37
FaeI CATG 1 cut(s) 76
FaiI YATR 1 cut(s) 74
FatI CATG 1 cut(s) 72
FblI GTMKAC 1 cut(s) 66
Fnu4HI GCNGC 1 cut(s) 25
FokI GGATG 1 cut(s) 105
Fsp4HI GCNGC 1 cut(s) 25
GluI GCNGC 1 cut(s) 25
HapII CCGG 3 cut(s) 38, 48, 81
Hin1II CATG 1 cut(s) 76
HinfI GANTC 1 cut(s) 29
HpaII CCGG 3 cut(s) 38, 48, 81
Hpy166II GTNNAC 1 cut(s) 67
Hpy188III TCNNGA 1 cut(s) 125
Hpy8I GTNNAC 1 cut(s) 67
HpyCH4III ACNGT 2 cut(s) 62, 98
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 33
Hsp92II CATG 1 cut(s) 76
Kzo9I GATC 1 cut(s) 127
LpnPI CCDG 4 cut(s) 51, 61, 94, 122
Lsp1109I GCAGC 1 cut(s) 36
MalI GATC 1 cut(s) 129
MboI GATC 1 cut(s) 127
MfeI CAATTG 1 cut(s) 8
MhlI GDGCHC 2 cut(s) 38, 57
MluCI AATT 1 cut(s) 8
MnlI CCTC 1 cut(s) 132
MslI CAYNNNNRTG 1 cut(s) 123
MspI CCGG 3 cut(s) 38, 48, 81
MspR9I CCNGG 3 cut(s) 38, 48, 82
MunI CAATTG 1 cut(s) 8
MwoI GCNNNNNNNGC 2 cut(s) 13, 33
NciI CCSGG 3 cut(s) 38, 48, 82
NdeII GATC 1 cut(s) 127
NlaIII CATG 1 cut(s) 76
NlaIV GGNNCC 1 cut(s) 107
NspI RCATGY 1 cut(s) 76
PfeI GAWTC 1 cut(s) 29
PkrI GCNGC 1 cut(s) 26
PspN4I GGNNCC 1 cut(s) 107
RsaI GTAC 1 cut(s) 113
RsaNI GTAC 1 cut(s) 112
RseI CAYNNNNRTG 1 cut(s) 123
SatI GCNGC 1 cut(s) 25
Sau3AI GATC 1 cut(s) 127
ScrFI CCNGG 3 cut(s) 38, 48, 82
SduI GDGCHC 2 cut(s) 38, 57
SmiMI CAYNNNNRTG 1 cut(s) 123
Sse9I AATT 1 cut(s) 8
SsiI CCGC 1 cut(s) 137
StyD4I CCNGG 3 cut(s) 36, 46, 80
TaaI ACNGT 2 cut(s) 62, 98
TasI AATT 1 cut(s) 8
TatI WGTACW 1 cut(s) 111
TfiI GAWTC 1 cut(s) 29
TseI GCWGC 1 cut(s) 24
XceI RCATGY 1 cut(s) 76
XmiI GTMKAC 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.