pycom09g03980

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0002970
Physical Location & Seq
Forward (+)
2968942 .. 2970698
1757 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g03980.3

Sequence Viewer

Length: 909 bp
ATGCATCAGGAAGAAAAATCATGTCCTTATTACATGCGAACTGGATCGTGCAAGTTTGGACCTGCCTGCAAGTTTCATCATCCTCAGCCTCAGTCACTTGGCACTGTCTTACCTGCTTTTGGATCTGCGGGTTCAACAGTTGTGCCTTCTTCTGGTGTTCCGTATGTAGGTGGACTTTCTACATGGTCAATTCCAAGAGTGCCATATATATCGGGCCCACGTTTACAAACTCCGCAGTCGTACATGCCCGTTGTTCTTCCTCCCCAAGGCATTGTACCTGCCCATGGATGGAACACATATGTGGGAAACCTGAGCCCTGTATCTTCCACTGGTATTCTTGGATCCAACCTCACATACAACTCTAGTACTTGGGGGGAGTCAGCTTCCAACGGGCAGGTTCACTTGTCAAGTCCAAGTCTCCCCCAGAGGCCTGATCAACCTGAATGCCGGTACTTTATGAGCACTGGGACTTGCAAATATGGAATAGATTGCAAGTACCACCACCCAAAAGAAAGGATTGCAGAATCTGCTACAACCCCACTCGGGCTTCCCTCGAGACCTGGGCAACCCGTATGCTCATACTACCTTATGTATGGAATCTGCAAGTACGGACCAACTTGCCGGTTTGATCATCCCTTCATGGAACAATCTGCTAGCTATAATTTCGGAATGCAGGCATTGCCCATGCTCGATTCATCTCTCATAAGTTATCCAAGAGGCTGGTCAGTGGCTCATGGACTAGAGACATCCCCCTCCATCCCATCAAAACTCACCGATGGAGCCAAAAAACCGGCGAGCAACAGATATGAAAACTCTGATACAAAGATTTCAGAAGATTCCCCGGAACAAGTGGGTTCCATGTCACCTTCTCCAACATCCTCGGAACCTGTACAAGACCAGTCTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

303

Amino Acids

32.63

Weight (kDa)

7.58

Isoelectric Point (pI)

68.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 4 cut(s) 70, 121, 286, 385
AciI CCGC 2 cut(s) 128, 233
AclWI GGATC 4 cut(s) 52, 130, 336, 349
AfaI GTAC 7 cut(s) 242, 276, 367, 452, 497, 608, 891
AfiI CCNNNNNNNGG 7 cut(s) 119, 152, 167, 266, 284, 288, 543
AgsI TTSAA 1 cut(s) 135
AjnI CCWGG 1 cut(s) 559
AleI CACNNNNGTG 1 cut(s) 299
AluBI AGCT 2 cut(s) 383, 657
AluI AGCT 2 cut(s) 383, 657
Alw21I GWGCWC 1 cut(s) 464
Alw26I GTCTC 3 cut(s) 422, 550, 737
AlwI GGATC 4 cut(s) 52, 130, 336, 349
AlwNI CAGNNNCTG 1 cut(s) 527
Ama87I CYCGRG 2 cut(s) 542, 553
AoxI GGCC 2 cut(s) 214, 428
ApaI GGGCCC 1 cut(s) 218
AspS9I GGNCC 4 cut(s) 59, 214, 215, 611
AsuC2I CCSGG 1 cut(s) 842
AsuHPI GGTGA 2 cut(s) 763, 855
AsuNHI GCTAGC 1 cut(s) 653
AvaI CYCGRG 2 cut(s) 542, 553
AvaII GGWCC 2 cut(s) 59, 611
BaeGI GKGCMC 1 cut(s) 218
BamHI GGATCC 1 cut(s) 341
BanII GRGCYC 2 cut(s) 218, 317
Bbv12I GWGCWC 1 cut(s) 464
BbvCI CCTCAGC 1 cut(s) 84
BccI CCATC 4 cut(s) 282, 764, 769, 770
BciT130I CCWGG 1 cut(s) 561
BclI TGATCA 2 cut(s) 433, 628
BcnI CCSGG 1 cut(s) 842
BcoDI GTCTC 3 cut(s) 422, 550, 737
BfaI CTAG 3 cut(s) 363, 654, 740
BfuAI ACCTGC 4 cut(s) 70, 121, 286, 385
BmcAI AGTACT 1 cut(s) 367
Bme1390I CCNGG 2 cut(s) 561, 842
Bme18I GGWCC 2 cut(s) 59, 611
BmeT110I CYCGRG 2 cut(s) 542, 553
BmgT120I GGNCC 4 cut(s) 59, 214, 215, 611
BmiI GGNNCC 5 cut(s) 216, 343, 781, 856, 885
BmrFI CCNGG 2 cut(s) 561, 842
BmrI ACTGGG 1 cut(s) 474
BmsI GCATC 1 cut(s) 13
BmtI GCTAGC 1 cut(s) 657
BmuI ACTGGG 1 cut(s) 474
Bpu10I CCTNAGC 2 cut(s) 84, 311
BpuMI CCSGG 1 cut(s) 842
BsaI GGTCTC 1 cut(s) 550
BsaJI CCNNGG 5 cut(s) 265, 283, 560, 840, 879
Bsc4I CCNNNNNNNGG 7 cut(s) 119, 152, 167, 266, 284, 288, 543
Bse118I RCCGGY 3 cut(s) 447, 621, 790
Bse1I ACTGG 4 cut(s) 46, 334, 469, 898
Bse3DI GCAATG 1 cut(s) 677
BseBI CCWGG 1 cut(s) 561
BseDI CCNNGG 5 cut(s) 265, 283, 560, 840, 879
BseGI GGATG 6 cut(s) 79, 293, 631, 746, 756, 875
BseLI CCNNNNNNNGG 7 cut(s) 119, 152, 167, 266, 284, 288, 543
BseMI GCAATG 1 cut(s) 677
BseMII CTCAG 3 cut(s) 98, 104, 302
BseNI ACTGG 4 cut(s) 46, 334, 469, 898
BseSI GKGCMC 1 cut(s) 218
BshFI GGCC 2 cut(s) 216, 430
BsiHKAI GWGCWC 1 cut(s) 464
BsiHKCI CYCGRG 2 cut(s) 542, 553
BsiSI CCGG 4 cut(s) 448, 622, 791, 842
BslFI GGGAC 1 cut(s) 481
BslI CCNNNNNNNGG 7 cut(s) 119, 152, 167, 266, 284, 288, 543
BsmAI GTCTC 3 cut(s) 422, 550, 737
BsmFI GGGAC 1 cut(s) 481
BsmI GAATGC 2 cut(s) 449, 675
BsnI GGCC 2 cut(s) 216, 430
Bso31I GGTCTC 1 cut(s) 550
BsoBI CYCGRG 2 cut(s) 542, 553
Bsp120I GGGCCC 1 cut(s) 214
Bsp1286I GDGCHC 3 cut(s) 218, 317, 464
Bsp1407I TGTACA 1 cut(s) 889
Bsp143I GATC 5 cut(s) 44, 122, 341, 433, 628
Bsp19I CCATGG 1 cut(s) 283
BspACI CCGC 2 cut(s) 128, 233
BspANI GGCC 2 cut(s) 216, 430
BspCNI CTCAG 3 cut(s) 97, 103, 303
BspLI GGNNCC 5 cut(s) 216, 343, 781, 856, 885
BspMI ACCTGC 4 cut(s) 70, 121, 286, 385
BspOI GCTAGC 1 cut(s) 657
BspPI GGATC 4 cut(s) 52, 130, 336, 349
BspTNI GGTCTC 1 cut(s) 550
BsrDI GCAATG 1 cut(s) 677
BsrFI RCCGGY 3 cut(s) 447, 621, 790
BsrGI TGTACA 1 cut(s) 889
BsrI ACTGG 4 cut(s) 46, 334, 469, 898
BssAI RCCGGY 3 cut(s) 447, 621, 790
BssECI CCNNGG 5 cut(s) 265, 283, 560, 840, 879
BssMI GATC 5 cut(s) 44, 122, 341, 433, 628
BssT1I CCWWGG 2 cut(s) 265, 283
Bst2UI CCWGG 1 cut(s) 561
Bst4CI ACNGT 2 cut(s) 106, 139
BstAPI GCANNNNNTGC 2 cut(s) 527, 679
BstAUI TGTACA 1 cut(s) 889
BstC8I GCNNGC 4 cut(s) 67, 655, 675, 796
BstDEI CTNAG 3 cut(s) 84, 90, 311
BstDSI CCRYGG 1 cut(s) 283
BstENI CCTNNNNNAGG 1 cut(s) 264
BstF5I GGATG 6 cut(s) 79, 293, 631, 746, 756, 875
BstKTI GATC 5 cut(s) 47, 125, 344, 436, 631
BstMAI GTCTC 3 cut(s) 422, 550, 737
BstMBI GATC 5 cut(s) 44, 122, 341, 433, 628
BstMWI GCNNNNNNNGC 2 cut(s) 527, 679
BstNI CCWGG 1 cut(s) 561
BstNSI RCATGY 2 cut(s) 37, 247
BstSCI CCNGG 2 cut(s) 559, 840
BstSLI GKGCMC 1 cut(s) 218
BstX2I RGATCY 2 cut(s) 122, 341
BstXI CCANNNNNNTGG 1 cut(s) 720
BstYI RGATCY 2 cut(s) 122, 341
BsuRI GGCC 2 cut(s) 216, 430
BtgI CCRYGG 1 cut(s) 283
BtsCI GGATG 6 cut(s) 79, 293, 631, 746, 756, 875
BtsIMutI CAGTG 4 cut(s) 102, 327, 462, 732
BveI ACCTGC 4 cut(s) 70, 121, 286, 385
Cac8I GCNNGC 4 cut(s) 67, 655, 675, 796
CaiI CAGNNNCTG 1 cut(s) 527
Cfr10I RCCGGY 3 cut(s) 447, 621, 790
Cfr13I GGNCC 4 cut(s) 59, 214, 215, 611
Csp6I GTAC 7 cut(s) 241, 275, 366, 451, 496, 607, 890
CviAII CATG 9 cut(s) 21, 34, 183, 244, 284, 640, 685, 734, 859
CviQI GTAC 7 cut(s) 241, 275, 366, 451, 496, 607, 890
DdeI CTNAG 3 cut(s) 84, 90, 311
DpnI GATC 5 cut(s) 46, 124, 343, 435, 630
DpnII GATC 5 cut(s) 44, 122, 341, 433, 628
Eco130I CCWWGG 2 cut(s) 265, 283
Eco147I AGGCCT 1 cut(s) 430
Eco24I GRGCYC 2 cut(s) 218, 317
Eco31I GGTCTC 1 cut(s) 550
Eco47I GGWCC 2 cut(s) 59, 611
Eco88I CYCGRG 2 cut(s) 542, 553
EcoNI CCTNNNNNAGG 1 cut(s) 264
EcoRII CCWGG 1 cut(s) 559
EcoT14I CCWWGG 2 cut(s) 265, 283
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 218, 317
ErhI CCWWGG 2 cut(s) 265, 283
FaeI CATG 9 cut(s) 24, 37, 186, 247, 287, 643, 688, 737, 862
FaqI GGGAC 1 cut(s) 481
FatI CATG 9 cut(s) 20, 33, 182, 243, 283, 639, 684, 733, 858
FauI CCCGC 1 cut(s) 121
FauNDI CATATG 1 cut(s) 298
FbaI TGATCA 2 cut(s) 433, 628
FokI GGATG 6 cut(s) 66, 300, 618, 733, 743, 862
FriOI GRGCYC 2 cut(s) 218, 317
FspBI CTAG 3 cut(s) 363, 654, 740
HaeIII GGCC 2 cut(s) 216, 430
HapII CCGG 4 cut(s) 448, 622, 791, 842
Hin1II CATG 9 cut(s) 24, 37, 186, 247, 287, 643, 688, 737, 862
HinfI GANTC 5 cut(s) 377, 524, 597, 692, 836
HpaII CCGG 4 cut(s) 448, 622, 791, 842
HphI GGTGA 2 cut(s) 763, 855
Hpy166II GTNNAC 3 cut(s) 173, 224, 400
Hpy188I TCNGA 4 cut(s) 668, 817, 832, 883
Hpy188III TCNNGA 2 cut(s) 8, 555
Hpy8I GTNNAC 3 cut(s) 173, 224, 400
HpyAV CCTTC 3 cut(s) 156, 646, 876
HpyCH4III ACNGT 2 cut(s) 106, 139
HpyCH4IV ACGT 1 cut(s) 220
HpyCH4V TGCA 8 cut(s) 4, 51, 69, 474, 492, 521, 603, 673
HpyF10VI GCNNNNNNNGC 2 cut(s) 527, 679
HpyF3I CTNAG 3 cut(s) 84, 90, 311
HpySE526I ACGT 1 cut(s) 220
Hsp92II CATG 9 cut(s) 24, 37, 186, 247, 287, 643, 688, 737, 862
Ksp22I TGATCA 2 cut(s) 433, 628
Kzo9I GATC 5 cut(s) 44, 122, 341, 433, 628
LmnI GCTCC 1 cut(s) 779
LweI GCATC 1 cut(s) 13
MaeI CTAG 3 cut(s) 363, 654, 740
MaeII ACGT 1 cut(s) 220
MaeIII GTNAC 2 cut(s) 93, 861
MalI GATC 5 cut(s) 46, 124, 343, 435, 630
MboI GATC 5 cut(s) 44, 122, 341, 433, 628
MboII GAAGA 5 cut(s) 23, 141, 248, 315, 845
MflI RGATCY 2 cut(s) 122, 341
MhlI GDGCHC 3 cut(s) 218, 317, 464
MluCI AATT 2 cut(s) 189, 661
MlyI GAGTC 1 cut(s) 386
MmeI TCCRAC 3 cut(s) 369, 411, 896
MnlI CCTC 9 cut(s) 93, 99, 270, 359, 420, 562, 710, 763, 889
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 907
MslI CAYNNNNRTG 1 cut(s) 299
MspI CCGG 4 cut(s) 448, 622, 791, 842
MspR9I CCNGG 2 cut(s) 561, 842
Mva1269I GAATGC 2 cut(s) 449, 675
MvaI CCWGG 1 cut(s) 561
MwoI GCNNNNNNNGC 2 cut(s) 527, 679
NciI CCSGG 1 cut(s) 842
NcoI CCATGG 1 cut(s) 283
NdeI CATATG 1 cut(s) 298
NdeII GATC 5 cut(s) 44, 122, 341, 433, 628
NheI GCTAGC 1 cut(s) 653
NlaIII CATG 9 cut(s) 24, 37, 186, 247, 287, 643, 688, 737, 862
NlaIV GGNNCC 5 cut(s) 216, 343, 781, 856, 885
NmuCI GTSAC 2 cut(s) 93, 861
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 37, 247
OliI CACNNNNGTG 1 cut(s) 299
PaeR7I CTCGAG 1 cut(s) 553
PceI AGGCCT 1 cut(s) 430
PctI GAATGC 2 cut(s) 449, 675
PfeI GAWTC 4 cut(s) 524, 597, 692, 836
PleI GAGTC 1 cut(s) 385
PpsI GAGTC 1 cut(s) 385
Psp6I CCWGG 1 cut(s) 559
PspGI CCWGG 1 cut(s) 559
PspN4I GGNNCC 5 cut(s) 216, 343, 781, 856, 885
PspOMI GGGCCC 1 cut(s) 214
PspPI GGNCC 4 cut(s) 59, 214, 215, 611
PstNI CAGNNNCTG 1 cut(s) 527
PsuI RGATCY 2 cut(s) 122, 341
RsaI GTAC 7 cut(s) 242, 276, 367, 452, 497, 608, 891
RsaNI GTAC 7 cut(s) 241, 275, 366, 451, 496, 607, 890
RseI CAYNNNNRTG 1 cut(s) 299
SaqAI TTAA 1 cut(s) 907
Sau3AI GATC 5 cut(s) 44, 122, 341, 433, 628
Sau96I GGNCC 4 cut(s) 59, 214, 215, 611
ScaI AGTACT 1 cut(s) 367
SchI GAGTC 1 cut(s) 386
ScrFI CCNGG 2 cut(s) 561, 842
SduI GDGCHC 3 cut(s) 218, 317, 464
SfaNI GCATC 1 cut(s) 13
Sfr274I CTCGAG 1 cut(s) 553
SinI GGWCC 2 cut(s) 59, 611
SlaI CTCGAG 1 cut(s) 553
SmiMI CAYNNNNRTG 1 cut(s) 299
SmlI CTYRAG 1 cut(s) 553
SmoI CTYRAG 1 cut(s) 553
Sse9I AATT 2 cut(s) 189, 661
SseBI AGGCCT 1 cut(s) 430
SsiI CCGC 2 cut(s) 128, 233
SspMI CTAG 3 cut(s) 363, 654, 740
StuI AGGCCT 1 cut(s) 430
StyD4I CCNGG 2 cut(s) 559, 840
StyI CCWWGG 2 cut(s) 265, 283
TaaI ACNGT 2 cut(s) 106, 139
TaiI ACGT 1 cut(s) 223
TaqI TCGA 2 cut(s) 554, 690
TasI AATT 2 cut(s) 189, 661
TatI WGTACW 2 cut(s) 365, 889
TfiI GAWTC 4 cut(s) 524, 597, 692, 836
Tru1I TTAA 1 cut(s) 907
Tru9I TTAA 1 cut(s) 907
TscAI CASTG 4 cut(s) 109, 334, 469, 732
TseFI GTSAC 2 cut(s) 93, 861
Tsp45I GTSAC 2 cut(s) 93, 861
TspDTI ATGAA 4 cut(s) 65, 628, 684, 822
TspGWI ACGGA 2 cut(s) 150, 624
TspRI CASTG 4 cut(s) 109, 334, 469, 732
VpaK11BI GGWCC 2 cut(s) 59, 611
XagI CCTNNNNNAGG 1 cut(s) 264
XceI RCATGY 2 cut(s) 37, 247
XhoI CTCGAG 1 cut(s) 553
XspI CTAG 3 cut(s) 363, 654, 740
ZrmI AGTACT 1 cut(s) 367
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.