Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002970

Physical Location & Seq

Genomic Coordinates Reverse (-)

16674272 .. 16676606

Gene Structure 2335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG160500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGTCTTGCAGTAAGGAAAAAAACACGGAGCCTCCTCCTCATCTTCTTATACTCCATCATCAATGGCGAGCCATCTCTTCACCTAAGGTTTCACTTGTTGCTCCAAGTGAGTCCCTTCCTGAGAGACCTGGAGCGCCAGATTGTCCATACTTTCTAAAAACTCAAAGATGCAAGTTTGGTCTTAGATGCAAGTTTGATCATCCAAAGGACAAACTGGCTACTGCGGGTGGTTCAGAAAATGGTGATGTTTTTGCCTTACCCGAGAGGCCTTCGGAACCTGCATGTGCATTCTACTTGAAAACTGGGCAATGCAAGTATGGTGGCACCCTGCAAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001709 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0032502 GO:0034248 GO:0034249 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045165 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048869 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:1903311 GO:1903313 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

112

Amino Acids

12.35

Weight (kDa)

8.79

Isoelectric Point (pI)

63.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	44 - 69	5.1e-09	Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04990 AT1G04990 AT1G04990 AT1G04990 AT1G04990 AT1G04990 AT2G32930 AT2G32930 AT2G32930
fragaria_vesca	FvH4_3g13621 FvH4_6g42010 FvH4_6g42010
malus_domestica	MD03G1135600.v1.1 MD03G1279200.v1.1 MD03G1279800.v1.1 MD05G1053000.v1.1 MD06G1100700.v1.1 MD09G1115400.v1.1 MD10G1110500.v1.1 MD17G1107000.v1.1
prunus_persica	Prupe.3G209200_v2.0.a1 Prupe.3G209200_v2.0.a1
pyrus_communis	pycom09g03970 pycom09g03980 pycom17g09960
rosa_chinensis	RchiOBHm_Chr2g0157941
rosa_laevigata	RLG00000021036
rosa_multiflora	Rmu_sc0011758.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091850
rosa_rugosa	Rorug01G0068500 Rorug02G0304500.1 Rorug02G0464400
rosa_samantha	Rh2AG529800 Rh2BG544500 Rh2CG514200 Rh2DG552800 Rh5BG160500
rosa_wichuraiana	Rw2G043860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	286
AccB1I	GGYRCC	1 cut(s)	323
AciI	CCGC	1 cut(s)	224
AcsI	RAATTY	1 cut(s)	333
AgsI	TTSAA	1 cut(s)	298
AjnI	CCWGG	1 cut(s)	127
Alw26I	GTCTC	1 cut(s)	118
Ama87I	CYCGRG	1 cut(s)	260
AoxI	GGCC	1 cut(s)	266
ApoI	RAATTY	1 cut(s)	333
AspLEI	GCGC	1 cut(s)	136
AsuHPI	GGTGA	2 cut(s)	72, 254
AvaI	CYCGRG	1 cut(s)	260
AxyI	CCTNAGG	1 cut(s)	84
BanI	GGYRCC	1 cut(s)	323
BccI	CCATC	2 cut(s)	63, 80
BciT130I	CCWGG	1 cut(s)	129
BclI	TGATCA	1 cut(s)	196
BcoDI	GTCTC	1 cut(s)	118
BfoI	RGCGCY	1 cut(s)	137
BfuAI	ACCTGC	1 cut(s)	286
Bme1390I	CCNGG	1 cut(s)	129
BmeT110I	CYCGRG	1 cut(s)	260
BmiI	GGNNCC	3 cut(s)	30, 276, 325
BmrFI	CCNGG	1 cut(s)	129
BmrI	ACTGGG	1 cut(s)	312
BmsI	GCATC	2 cut(s)	158, 176
BmuI	ACTGGG	1 cut(s)	312
BpmI	CTGGAG	1 cut(s)	150
BsaI	GGTCTC	1 cut(s)	118
BsaXI	ACNNNNNCTCC	2 cut(s)	16, 46
Bse1I	ACTGG	2 cut(s)	219, 307
Bse21I	CCTNAGG	1 cut(s)	84
Bse3DI	GCAATG	1 cut(s)	314
BseBI	CCWGG	1 cut(s)	129
BseGI	GGATG	1 cut(s)	199
BseMI	GCAATG	1 cut(s)	314
BseMII	CTCAG	1 cut(s)	111
BseNI	ACTGG	2 cut(s)	219, 307
BseRI	GAGGAG	2 cut(s)	24, 27
BshFI	GGCC	1 cut(s)	268
BshNI	GGYRCC	1 cut(s)	323
BsiHKCI	CYCGRG	1 cut(s)	260
BslFI	GGGAC	1 cut(s)	97
BsmAI	GTCTC	1 cut(s)	118
BsmFI	GGGAC	1 cut(s)	97
BsmI	GAATGC	1 cut(s)	287
BsnI	GGCC	1 cut(s)	268
Bso31I	GGTCTC	1 cut(s)	118
BsoBI	CYCGRG	1 cut(s)	260
Bsp143I	GATC	1 cut(s)	196
BspACI	CCGC	1 cut(s)	224
BspANI	GGCC	1 cut(s)	268
BspCNI	CTCAG	1 cut(s)	112
BspLI	GGNNCC	3 cut(s)	30, 276, 325
BspMI	ACCTGC	1 cut(s)	286
BspT107I	GGYRCC	1 cut(s)	323
BspTNI	GGTCTC	1 cut(s)	118
BsrDI	GCAATG	1 cut(s)	314
BsrI	ACTGG	2 cut(s)	219, 307
BssMI	GATC	1 cut(s)	196
Bst2UI	CCWGG	1 cut(s)	129
Bst6I	CTCTTC	1 cut(s)	82
BstC8I	GCNNGC	1 cut(s)	69
BstDEI	CTNAG	3 cut(s)	84, 120, 182
BstF5I	GGATG	1 cut(s)	199
BstH2I	RGCGCY	1 cut(s)	137
BstHHI	GCGC	1 cut(s)	136
BstKTI	GATC	1 cut(s)	199
BstMAI	GTCTC	1 cut(s)	118
BstMBI	GATC	1 cut(s)	196
BstNI	CCWGG	1 cut(s)	129
BstNSI	RCATGY	1 cut(s)	285
BstSCI	CCNGG	1 cut(s)	127
Bsu36I	CCTNAGG	1 cut(s)	84
BsuRI	GGCC	1 cut(s)	268
BtsCI	GGATG	1 cut(s)	199
BveI	ACCTGC	1 cut(s)	286
Cac8I	GCNNGC	1 cut(s)	69
CfoI	GCGC	1 cut(s)	136
CspCI	CAANNNNNGTGG	2 cut(s)	301, 336
CviAII	CATG	1 cut(s)	282
CviJI	RGCY	4 cut(s)	31, 71, 218, 268
CviKI_1	RGCY	4 cut(s)	31, 71, 218, 268
DdeI	CTNAG	3 cut(s)	84, 120, 182
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
Eam1104I	CTCTTC	1 cut(s)	82
EarI	CTCTTC	1 cut(s)	82
Eco147I	AGGCCT	1 cut(s)	268
Eco31I	GGTCTC	1 cut(s)	118
Eco81I	CCTNAGG	1 cut(s)	84
Eco88I	CYCGRG	1 cut(s)	260
EcoRII	CCWGG	1 cut(s)	127
FaeI	CATG	1 cut(s)	285
FaiI	YATR	4 cut(s)	50, 148, 283, 318
FaqI	GGGAC	1 cut(s)	97
FatI	CATG	1 cut(s)	281
FauI	CCCGC	1 cut(s)	217
FbaI	TGATCA	1 cut(s)	196
FokI	GGATG	1 cut(s)	186
GlaI	GCGC	1 cut(s)	135
GsuI	CTGGAG	1 cut(s)	150
HaeII	RGCGCY	1 cut(s)	137
HaeIII	GGCC	1 cut(s)	268
HhaI	GCGC	1 cut(s)	136
Hin1II	CATG	1 cut(s)	285
Hin6I	GCGC	1 cut(s)	134
HinP1I	GCGC	1 cut(s)	134
HinfI	GANTC	1 cut(s)	110
HphI	GGTGA	2 cut(s)	72, 254
Hpy188I	TCNGA	2 cut(s)	235, 274
Hpy188III	TCNNGA	1 cut(s)	119
HpyAV	CCTTC	2 cut(s)	125, 279
HpyCH4V	TGCA	7 cut(s)	9, 171, 189, 281, 287, 312, 331
HpyF3I	CTNAG	3 cut(s)	84, 120, 182
Hsp92II	CATG	1 cut(s)	285
HspAI	GCGC	1 cut(s)	134
Ksp22I	TGATCA	1 cut(s)	196
Kzo9I	GATC	1 cut(s)	196
LmnI	GCTCC	3 cut(s)	28, 106, 131
LpnPI	CCDG	7 cut(s)	114, 132, 141, 150, 200, 288, 291
LweI	GCATC	2 cut(s)	158, 176
MalI	GATC	1 cut(s)	198
MboI	GATC	1 cut(s)	196
MboII	GAAGA	2 cut(s)	35, 69
MluCI	AATT	1 cut(s)	333
MlyI	GAGTC	1 cut(s)	119
MnlI	CCTC	4 cut(s)	42, 45, 48, 258
MseI	TTAA	1 cut(s)	337
MspR9I	CCNGG	1 cut(s)	129
Mva1269I	GAATGC	1 cut(s)	287
MvaI	CCWGG	1 cut(s)	129
NdeII	GATC	1 cut(s)	196
NlaIII	CATG	1 cut(s)	285
NlaIV	GGNNCC	3 cut(s)	30, 276, 325
NspI	RCATGY	1 cut(s)	285
PceI	AGGCCT	1 cut(s)	268
PctI	GAATGC	1 cut(s)	287
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
Psp6I	CCWGG	1 cut(s)	127
PspGI	CCWGG	1 cut(s)	127
PspN4I	GGNNCC	3 cut(s)	30, 276, 325
SaqAI	TTAA	1 cut(s)	337
Sau3AI	GATC	1 cut(s)	196
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	1 cut(s)	129
SetI	ASST	4 cut(s)	85, 90, 130, 280
SfaNI	GCATC	2 cut(s)	158, 176
Sse9I	AATT	1 cut(s)	333
SseBI	AGGCCT	1 cut(s)	268
SsiI	CCGC	1 cut(s)	224
StuI	AGGCCT	1 cut(s)	268
StyD4I	CCNGG	1 cut(s)	127
TasI	AATT	1 cut(s)	333
Tru1I	TTAA	1 cut(s)	337
Tru9I	TTAA	1 cut(s)	337
TspGWI	ACGGA	1 cut(s)	41
XapI	RAATTY	1 cut(s)	333
XceI	RCATGY	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.