Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0002970

Physical Location & Seq

Genomic Coordinates Reverse (-)

9042296 .. 9042729

Gene Structure 434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1053000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGAGGTACAACCTCTCAGCTTCATCTCTCGTTGATATGCCTGTTGTTCAATATCCGGTTGGGTTTCTGCTGGCCACCCTGGCTCCATCATCCTCATCATTGGATCTCCGGCCTCGAAGGTACTCCTTTACTTGCTCGGCGTTTAAATTTCGCTTCGGTTTTGTGTTTGGTTTGGTAATGTGGGGTTGTGATTGGGGTTTTGTTCTGGTTTACGGGGGAATTGTAGAGCAAATGTGGCAATTGGGGCTGACGAGCAGCGAATCGTACCCGGAGAAACCTGGCGTGCCCAACTGTGTCTACTACATGCGAACTGGGTTCTGTGGATACGGTGGTCGGTGCCAGTACAACCATCCTCATGATCGTGGTGCGGTAAGTCCTTGTTCGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000165 GO:0000288 GO:0000289 GO:0000322 GO:0000323 GO:0000324 GO:0000329 GO:0000932 GO:0000956 GO:0001817 GO:0001818 GO:0002237 GO:0002376 GO:0002474 GO:0002478 GO:0002495 GO:0002504 GO:0002682 GO:0002683 GO:0002791 GO:0002793 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0003730 GO:0005048 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005798 GO:0005829 GO:0006139 GO:0006355 GO:0006357 GO:0006401 GO:0006402 GO:0006403 GO:0006417 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006886 GO:0006888 GO:0006900 GO:0006901 GO:0006903 GO:0006914 GO:0006950 GO:0006996 GO:0007154 GO:0007165 GO:0008104 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009719 GO:0009725 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009896 GO:0009987 GO:0009991 GO:0010033 GO:0010468 GO:0010494 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010837 GO:0010869 GO:0010941 GO:0012505 GO:0012506 GO:0012507 GO:0014070 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016043 GO:0016050 GO:0016070 GO:0016071 GO:0016192 GO:0016236 GO:0016310 GO:0016441 GO:0016458 GO:0017091 GO:0017148 GO:0019219 GO:0019222 GO:0019439 GO:0019538 GO:0019882 GO:0019884 GO:0019886 GO:0019899 GO:0019900 GO:0019901 GO:0019955 GO:0019956 GO:0019957 GO:0022607 GO:0023014 GO:0023052 GO:0030117 GO:0030120 GO:0030127 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0030856 GO:0031047 GO:0031072 GO:0031086 GO:0031090 GO:0031098 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031330 GO:0031331 GO:0031347 GO:0031348 GO:0031410 GO:0031667 GO:0031960 GO:0031982 GO:0031984 GO:0032101 GO:0032102 GO:0032268 GO:0032269 GO:0032496 GO:0032663 GO:0032680 GO:0032703 GO:0032870 GO:0032879 GO:0032880 GO:0032897 GO:0032991 GO:0033036 GO:0033218 GO:0033554 GO:0033993 GO:0034097 GO:0034248 GO:0034249 GO:0034612 GO:0034613 GO:0034622 GO:0034641 GO:0034655 GO:0035194 GO:0035195 GO:0035278 GO:0035459 GO:0035556 GO:0035770 GO:0035925 GO:0036211 GO:0036464 GO:0038066 GO:0040029 GO:0040033 GO:0042035 GO:0042036 GO:0042127 GO:0042175 GO:0042221 GO:0042277 GO:0042592 GO:0042594 GO:0042632 GO:0042886 GO:0042981 GO:0043067 GO:0043086 GO:0043167 GO:0043169 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043487 GO:0043488 GO:0043489 GO:0043900 GO:0043901 GO:0043903 GO:0043933 GO:0044085 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044344 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045076 GO:0045085 GO:0045184 GO:0045595 GO:0045596 GO:0045597 GO:0045598 GO:0045600 GO:0045604 GO:0045616 GO:0045637 GO:0045638 GO:0045646 GO:0045647 GO:0045682 GO:0045714 GO:0045892 GO:0045934 GO:0045935 GO:0045974 GO:0046483 GO:0046700 GO:0046782 GO:0046872 GO:0046907 GO:0046914 GO:0048002 GO:0048193 GO:0048194 GO:0048199 GO:0048207 GO:0048208 GO:0048255 GO:0048475 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048525 GO:0048545 GO:0048583 GO:0048585 GO:0048878 GO:0050657 GO:0050658 GO:0050678 GO:0050708 GO:0050714 GO:0050727 GO:0050728 GO:0050779 GO:0050789 GO:0050790 GO:0050792 GO:0050793 GO:0050794 GO:0050896 GO:0051028 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051093 GO:0051094 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051236 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051338 GO:0051348 GO:0051384 GO:0051403 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0051668 GO:0051704 GO:0051707 GO:0051716 GO:0055088 GO:0055092 GO:0060147 GO:0060148 GO:0060211 GO:0060213 GO:0060255 GO:0060341 GO:0060964 GO:0060966 GO:0060968 GO:0061013 GO:0061014 GO:0061024 GO:0061157 GO:0061158 GO:0061919 GO:0065003 GO:0065007 GO:0065008 GO:0065009 GO:0070063 GO:0070201 GO:0070727 GO:0070848 GO:0070849 GO:0070887 GO:0070935 GO:0070971 GO:0071216 GO:0071219 GO:0071222 GO:0071310 GO:0071345 GO:0071356 GO:0071363 GO:0071364 GO:0071383 GO:0071384 GO:0071385 GO:0071396 GO:0071407 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071774 GO:0071840 GO:0071889 GO:0080090 GO:0080134 GO:0090087 GO:0090110 GO:0090114 GO:0090304 GO:0097011 GO:0097012 GO:0097159 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098827 GO:0098852 GO:1900151 GO:1900153 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901575 GO:1901700 GO:1901701 GO:1901834 GO:1901835 GO:1902172 GO:1902369 GO:1902373 GO:1902679 GO:1903311 GO:1903312 GO:1903313 GO:1903506 GO:1903507 GO:1903530 GO:1903532 GO:1903555 GO:1903706 GO:1903707 GO:1904035 GO:1904245 GO:1904246 GO:1904580 GO:1904582 GO:1904951 GO:1990904 GO:2000026 GO:2000112 GO:2000113 GO:2000637 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04141 ko04218 ko05166 ko05167 map04141 map04218 map05166 map05167

Pfam Domains

Protein Families

Gelsolin Sec23_BS Sec23_helical Sec23_trunk zf-CCCH zf-Sec23_Sec24

Protein Analysis

130

Amino Acids

14.44

Weight (kDa)

8.57

Isoelectric Point (pI)

36.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	94 - 118	2.4e-08	Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04990 AT1G04990 AT1G04990 AT1G04990 AT1G04990 AT1G04990 AT2G32930 AT2G32930 AT2G32930
fragaria_vesca	FvH4_3g13621 FvH4_6g42010 FvH4_6g42010
malus_domestica	MD03G1135600.v1.1 MD03G1279200.v1.1 MD03G1279800.v1.1 MD05G1053000.v1.1 MD06G1100700.v1.1 MD09G1115400.v1.1 MD10G1110500.v1.1 MD17G1107000.v1.1
prunus_persica	Prupe.3G209200_v2.0.a1 Prupe.3G209200_v2.0.a1
pyrus_communis	pycom09g03970 pycom09g03980 pycom17g09960
rosa_chinensis	RchiOBHm_Chr2g0157941
rosa_laevigata	RLG00000021036
rosa_multiflora	Rmu_sc0011758.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091850
rosa_rugosa	Rorug01G0068500 Rorug02G0304500.1 Rorug02G0464400
rosa_samantha	Rh2AG529800 Rh2BG544500 Rh2CG514200 Rh2DG552800 Rh5BG160500
rosa_wichuraiana	Rw2G043860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	336
AccI	GTMKAC	1 cut(s)	297
AciI	CCGC	1 cut(s)	368
AclWI	GGATC	1 cut(s)	111
AcoI	YGGCCR	1 cut(s)	72
AcsI	RAATTY	1 cut(s)	146
AfaI	GTAC	4 cut(s)	8, 122, 266, 344
AgsI	TTSAA	1 cut(s)	50
AjnI	CCWGG	2 cut(s)	78, 277
AluBI	AGCT	1 cut(s)	20
AluI	AGCT	1 cut(s)	20
AlwI	GGATC	1 cut(s)	111
AoxI	GGCC	2 cut(s)	72, 110
ApeKI	GCWGC	1 cut(s)	255
ApoI	RAATTY	1 cut(s)	146
AsuC2I	CCSGG	1 cut(s)	269
BaeGI	GKGCMC	1 cut(s)	288
BaeI	ACNNNNGTAYC	2 cut(s)	316, 349
BalI	TGGCCA	1 cut(s)	74
BanI	GGYRCC	1 cut(s)	336
BbvI	GCAGC	1 cut(s)	267
BccI	CCATC	2 cut(s)	94, 357
BciT130I	CCWGG	2 cut(s)	80, 279
BciVI	GTATCC	1 cut(s)	317
BcnI	CCSGG	1 cut(s)	269
BfuI	GTATCC	1 cut(s)	317
BglI	GCCNNNNNGGC	1 cut(s)	80
BisI	GCNGC	1 cut(s)	256
BlsI	GCNGC	1 cut(s)	257
Bme1390I	CCNGG	3 cut(s)	80, 269, 279
BmiI	GGNNCC	2 cut(s)	84, 338
BmrFI	CCNGG	3 cut(s)	80, 269, 279
BmrI	ACTGGG	1 cut(s)	321
BmuI	ACTGGG	1 cut(s)	321
BpuMI	CCSGG	1 cut(s)	269
BsaJI	CCNNGG	1 cut(s)	78
BsaWI	WCCGGW	1 cut(s)	55
BsaXI	ACNNNNNCTCC	2 cut(s)	67, 97
Bse1I	ACTGG	2 cut(s)	316, 340
BseBI	CCWGG	2 cut(s)	80, 279
BseDI	CCNNGG	1 cut(s)	78
BseGI	GGATG	2 cut(s)	89, 349
BseMII	CTCAG	1 cut(s)	30
BseNI	ACTGG	2 cut(s)	316, 340
BseSI	GKGCMC	1 cut(s)	288
BseXI	GCAGC	1 cut(s)	267
BshFI	GGCC	2 cut(s)	74, 112
BshNI	GGYRCC	1 cut(s)	336
BsiSI	CCGG	3 cut(s)	56, 109, 269
BsnI	GGCC	2 cut(s)	74, 112
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp143I	GATC	2 cut(s)	103, 358
BspACI	CCGC	1 cut(s)	368
BspANI	GGCC	2 cut(s)	74, 112
BspCNI	CTCAG	1 cut(s)	29
BspHI	TCATGA	1 cut(s)	355
BspLI	GGNNCC	2 cut(s)	84, 338
BspPI	GGATC	1 cut(s)	111
BspT107I	GGYRCC	1 cut(s)	336
BsrI	ACTGG	2 cut(s)	316, 340
BssECI	CCNNGG	1 cut(s)	78
BssMI	GATC	2 cut(s)	103, 358
Bst2UI	CCWGG	2 cut(s)	80, 279
Bst4CI	ACNGT	2 cut(s)	293, 329
BstC8I	GCNNGC	2 cut(s)	72, 284
BstDEI	CTNAG	1 cut(s)	16
BstF5I	GGATG	2 cut(s)	89, 349
BstKTI	GATC	2 cut(s)	106, 361
BstMBI	GATC	2 cut(s)	103, 358
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 235, 244
BstNI	CCWGG	2 cut(s)	80, 279
BstNSI	RCATGY	1 cut(s)	307
BstSCI	CCNGG	3 cut(s)	78, 267, 277
BstSLI	GKGCMC	1 cut(s)	288
BstV1I	GCAGC	1 cut(s)	267
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BsuI	GTATCC	1 cut(s)	317
BsuRI	GGCC	2 cut(s)	74, 112
BtsCI	GGATG	2 cut(s)	89, 349
Cac8I	GCNNGC	2 cut(s)	72, 284
CciI	TCATGA	1 cut(s)	355
Csp6I	GTAC	4 cut(s)	7, 121, 265, 343
CviAII	CATG	2 cut(s)	304, 356
CviJI	RGCY	5 cut(s)	20, 74, 83, 112, 247
CviKI_1	RGCY	5 cut(s)	20, 74, 83, 112, 247
CviQI	GTAC	4 cut(s)	7, 121, 265, 343
DdeI	CTNAG	1 cut(s)	16
DpnI	GATC	2 cut(s)	105, 360
DpnII	GATC	2 cut(s)	103, 358
DraI	TTTAAA	1 cut(s)	145
EaeI	YGGCCR	1 cut(s)	72
EcoRII	CCWGG	2 cut(s)	78, 277
FaeI	CATG	2 cut(s)	307, 359
FaiI	YATR	3 cut(s)	38, 305, 357
FatI	CATG	2 cut(s)	303, 355
FblI	GTMKAC	1 cut(s)	297
Fnu4HI	GCNGC	1 cut(s)	256
FokI	GGATG	2 cut(s)	76, 336
Fsp4HI	GCNGC	1 cut(s)	256
GluI	GCNGC	1 cut(s)	256
HaeIII	GGCC	2 cut(s)	74, 112
HapII	CCGG	3 cut(s)	56, 109, 269
Hin1II	CATG	2 cut(s)	307, 359
HinfI	GANTC	1 cut(s)	260
HpaII	CCGG	3 cut(s)	56, 109, 269
Hpy166II	GTNNAC	2 cut(s)	211, 298
Hpy188III	TCNNGA	1 cut(s)	356
Hpy8I	GTNNAC	2 cut(s)	211, 298
HpyAV	CCTTC	1 cut(s)	111
HpyCH4III	ACNGT	2 cut(s)	293, 329
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 235, 244
HpyF3I	CTNAG	1 cut(s)	16
Hsp92II	CATG	2 cut(s)	307, 359
Kzo9I	GATC	2 cut(s)	103, 358
LmnI	GCTCC	1 cut(s)	88
Lsp1109I	GCAGC	1 cut(s)	267
MalI	GATC	2 cut(s)	105, 360
MboI	GATC	2 cut(s)	103, 358
MfeI	CAATTG	1 cut(s)	239
MflI	RGATCY	1 cut(s)	103
MhlI	GDGCHC	1 cut(s)	288
MlsI	TGGCCA	1 cut(s)	74
MluCI	AATT	3 cut(s)	146, 219, 239
MluNI	TGGCCA	1 cut(s)	74
MnlI	CCTC	4 cut(s)	23, 103, 123, 363
Mox20I	TGGCCA	1 cut(s)	74
MscI	TGGCCA	1 cut(s)	74
MseI	TTAA	1 cut(s)	144
MslI	CAYNNNNRTG	2 cut(s)	354, 360
Msp20I	TGGCCA	1 cut(s)	74
MspI	CCGG	3 cut(s)	56, 109, 269
MspR9I	CCNGG	3 cut(s)	80, 269, 279
MunI	CAATTG	1 cut(s)	239
MvaI	CCWGG	2 cut(s)	80, 279
MwoI	GCNNNNNNNGC	3 cut(s)	80, 235, 244
NciI	CCSGG	1 cut(s)	269
NdeII	GATC	2 cut(s)	103, 358
NlaIII	CATG	2 cut(s)	307, 359
NlaIV	GGNNCC	2 cut(s)	84, 338
NmeAIII	GCCGAG	1 cut(s)	116
NspI	RCATGY	1 cut(s)	307
PagI	TCATGA	1 cut(s)	355
PfeI	GAWTC	1 cut(s)	260
PkrI	GCNGC	1 cut(s)	257
Psp6I	CCWGG	2 cut(s)	78, 277
PspGI	CCWGG	2 cut(s)	78, 277
PspN4I	GGNNCC	2 cut(s)	84, 338
PsuI	RGATCY	1 cut(s)	103
RsaI	GTAC	4 cut(s)	8, 122, 266, 344
RsaNI	GTAC	4 cut(s)	7, 121, 265, 343
RseI	CAYNNNNRTG	2 cut(s)	354, 360
SaqAI	TTAA	1 cut(s)	144
SatI	GCNGC	1 cut(s)	256
Sau3AI	GATC	2 cut(s)	103, 358
ScrFI	CCNGG	3 cut(s)	80, 269, 279
SduI	GDGCHC	1 cut(s)	288
SetI	ASST	5 cut(s)	8, 15, 22, 122, 280
SmiMI	CAYNNNNRTG	2 cut(s)	354, 360
Sse9I	AATT	3 cut(s)	146, 219, 239
SsiI	CCGC	1 cut(s)	368
StyD4I	CCNGG	3 cut(s)	78, 267, 277
TaaI	ACNGT	2 cut(s)	293, 329
TaqI	TCGA	1 cut(s)	115
TasI	AATT	3 cut(s)	146, 219, 239
TatI	WGTACW	1 cut(s)	342
TfiI	GAWTC	1 cut(s)	260
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TseI	GCWGC	1 cut(s)	255
TspDTI	ATGAA	1 cut(s)	12
XapI	RAATTY	1 cut(s)	146
XceI	RCATGY	1 cut(s)	307
XmiI	GTMKAC	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.