Rroxscaffold_2G00091850

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0002970
Physical Location & Seq
Forward (+)
13386246 .. 13390587
4342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00091850.1

Sequence Viewer

Length: 1356 bp
ATGCCAGACACTCGTCAGGCTCTGAAGAATGCCGTTCCCAATCAATCCGACGGTGCCGTTGAAGAGGCGTTTTGGCGGTTGACAATCAATGAGAACCAAGATGGGGGTGGTGTGGCTCAGTCTAACCTATACCCTGATCGACCTGGTGAACCCGATTGCATATATTATTTGAGGACTGGGTTGTGTGGTTATGGCAGTAACTGTCGGTTTAATCACCCTAAATATGCTTCACAGGTGATTGAGAATTACCATTTACGTGTTGTGCGTAGCCTTGATATGGCTGCTCAGTACAGTGGAGAACTCCCTGAAAGAGTTGGACAACCTGACTGCGGGTATTATCTGAAGACAGGGACTTGCAAATATGGATCAACCTGTAAATTCCATCATCCAAGGGACAGGCGTGGAGCTGGACCAGTTTTATTCAACATATTAGGACTGCCCATGCATCAGGAAGAAAAATCCTGTCCATATTACATGCGAACTGGATCATGCAAGTTTGGACCTGCATGCAAGTTTCATCATCCCCAGCCTCCATCATTTGGAACTGCCGTACCTGCTTTTGGATCAACAGGCTCAACAGTTGTGCCTTCTTCAGGTGTACCTTACTCAGGTGGACTTTCTGCGTGGTCATTTCCAAGAGCACCATATGTAGCAGGCCCACGTTTAGCAACTCCTCAACCTTACTTGCCTGCAGTTGTTCTTTCTCCGCCTCAAGGTGTTCTACCTGCCCATGGCTGGAATACCTATGTGGGAAACTTGAGCCCTGTGTCTTCGACTAGCATTCTTGGATCTAATCTTGCATACAACTCCAGAAGTCAGGGGGAATCAGCTTCCAATGGGCAGGTTCACTTGTCATCAAGTCCAAATCTCCCCCAGAGGCCTGACCAGCCTGAGTGCCGGTACTTTATGAACACTGGAACATGTAAATATGGAGCAGAATGCAAATACCATCACCCAAAAGAAAGGATTGCAGAATCCGCTACAAACCCACTTGGGCTTCCCTCAAGACCAGGGCAACCTCCATGTTCAAACTACATCATGTACGGAATCTGCAAGTATGGACCAACTTGCAGATTTGATCACCCCTTTATGGAACATTCCGGTAACTATAATTTTGGTATGCCTATGCTGCTTGATTCGTCTCCGCTAAGTTATCCCAGAAGCTGGATAGCTCCCCAAGGATTTGAGACTTCCCCCTCTATATCATCAAAATTTCCTGATGTGGTCCAAAAACCAGAGCGCGAAAAATATCAGAACTCGGAAACAAAGGTTCCAGAAGAATCCCCTGAACGAGCTACTGGCACTTCACCTCCGTCACCATCTTCCTCTGAAACGGTACAAGACCAAACTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

451

Amino Acids

49.3

Weight (kDa)

8.1

Isoelectric Point (pI)

61.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH PF00642 48 - 74 2.3e-09 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 107 - 131 1.1e-09 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 153 - 176 4.7e-10 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 295 - 320 4e-10 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 337 - 362 3.3e-07 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 4 cut(s) 511, 562, 733, 832
AccB1I GGYRCC 1 cut(s) 53
AccB7I CCANNNNNTGG 2 cut(s) 539, 1164
AccII CGCG 1 cut(s) 1242
AciI CCGC 5 cut(s) 76, 330, 707, 978, 1145
AclWI GGATC 4 cut(s) 373, 493, 571, 796
AcsI RAATTY 2 cut(s) 377, 1211
AcuI CTGAAG 3 cut(s) 44, 362, 576
AfaI GTAC 6 cut(s) 290, 552, 600, 902, 1043, 1338
AflIII ACRYGT 2 cut(s) 256, 920
AgsI TTSAA 3 cut(s) 62, 424, 1029
AjnI CCWGG 2 cut(s) 142, 1009
AluBI AGCT 5 cut(s) 407, 830, 1164, 1172, 1295
AluI AGCT 5 cut(s) 407, 830, 1164, 1172, 1295
Alw21I GWGCWC 1 cut(s) 643
Alw26I GTCTC 2 cut(s) 1146, 1181
AlwI GGATC 4 cut(s) 373, 493, 571, 796
AlwNI CAGNNNCTG 3 cut(s) 22, 201, 1164
AoxI GGCC 2 cut(s) 655, 878
ApeKI GCWGC 2 cut(s) 281, 1129
ApoI RAATTY 2 cut(s) 377, 1211
AspLEI GCGC 1 cut(s) 1242
AspS9I GGNCC 5 cut(s) 410, 500, 656, 1061, 1225
AsuHPI GGTGA 7 cut(s) 158, 206, 247, 944, 1073, 1299, 1308
AvaII GGWCC 4 cut(s) 410, 500, 1061, 1225
BaeI ACNNNNGTAYC 2 cut(s) 534, 567
BanI GGYRCC 1 cut(s) 53
BanII GRGCYC 1 cut(s) 764
BbsI GAAGAC 2 cut(s) 350, 762
Bbv12I GWGCWC 1 cut(s) 643
BbvI GCAGC 2 cut(s) 268, 1116
BccI CCATC 5 cut(s) 95, 390, 541, 957, 1327
BceAI ACGGC 3 cut(s) 17, 41, 533
BciT130I CCWGG 2 cut(s) 144, 1011
BclI TGATCA 1 cut(s) 1078
BcoDI GTCTC 2 cut(s) 1146, 1181
BfaI CTAG 1 cut(s) 777
BfmI CTRYAG 1 cut(s) 690
BfuAI ACCTGC 4 cut(s) 511, 562, 733, 832
BisI GCNGC 2 cut(s) 282, 1130
BlsI GCNGC 2 cut(s) 283, 1131
Bme1390I CCNGG 2 cut(s) 144, 1011
Bme18I GGWCC 4 cut(s) 410, 500, 1061, 1225
BmgT120I GGNCC 5 cut(s) 410, 500, 656, 1061, 1225
BmiI GGNNCC 2 cut(s) 55, 1272
BmrFI CCNGG 2 cut(s) 144, 1011
BmrI ACTGGG 1 cut(s) 186
BmsI GCATC 1 cut(s) 454
BmuI ACTGGG 1 cut(s) 186
BoxI GACNNNNGTC 1 cut(s) 12
BpiI GAAGAC 2 cut(s) 350, 762
BpmI CTGGAG 1 cut(s) 793
BpuEI CTTGAG 3 cut(s) 696, 778, 988
BsaAI YACGTR 1 cut(s) 257
BsaJI CCNNGG 4 cut(s) 389, 730, 1010, 1177
BsaWI WCCGGW 1 cut(s) 1100
BsaXI ACNNNNNCTCC 2 cut(s) 1294, 1324
Bse118I RCCGGY 1 cut(s) 897
Bse1I ACTGG 6 cut(s) 181, 413, 487, 919, 1303, 1354
BseBI CCWGG 2 cut(s) 144, 1011
BseDI CCNNGG 4 cut(s) 389, 730, 1010, 1177
BseGI GGATG 2 cut(s) 385, 520
BseMII CTCAG 4 cut(s) 131, 299, 621, 882
BseNI ACTGG 6 cut(s) 181, 413, 487, 919, 1303, 1354
BseRI GAGGAG 1 cut(s) 663
BseXI GCAGC 2 cut(s) 268, 1116
BseYI CCCAGC 1 cut(s) 525
Bsh1236I CGCG 1 cut(s) 1242
BshFI GGCC 2 cut(s) 657, 880
BshNI GGYRCC 1 cut(s) 53
BsiHKAI GWGCWC 1 cut(s) 643
BsiSI CCGG 2 cut(s) 898, 1101
BslFI GGGAC 2 cut(s) 364, 407
BsmAI GTCTC 2 cut(s) 1146, 1181
BsmBI CGTCTC 1 cut(s) 1146
BsmFI GGGAC 2 cut(s) 364, 407
BsmI GAATGC 3 cut(s) 34, 780, 944
BsnI GGCC 2 cut(s) 657, 880
Bsp1286I GDGCHC 2 cut(s) 643, 764
Bsp143I GATC 6 cut(s) 136, 365, 485, 563, 788, 1078
Bsp19I CCATGG 1 cut(s) 730
BspACI CCGC 5 cut(s) 76, 330, 707, 978, 1145
BspANI GGCC 2 cut(s) 657, 880
BspCNI CTCAG 4 cut(s) 130, 298, 620, 883
BspFNI CGCG 1 cut(s) 1242
BspLI GGNNCC 2 cut(s) 55, 1272
BspMAI CTGCAG 1 cut(s) 694
BspMI ACCTGC 4 cut(s) 511, 562, 733, 832
BspPI GGATC 4 cut(s) 373, 493, 571, 796
BspT107I GGYRCC 1 cut(s) 53
BsrFI RCCGGY 1 cut(s) 897
BsrI ACTGG 6 cut(s) 181, 413, 487, 919, 1303, 1354
BssAI RCCGGY 1 cut(s) 897
BssECI CCNNGG 4 cut(s) 389, 730, 1010, 1177
BssMI GATC 6 cut(s) 136, 365, 485, 563, 788, 1078
BssT1I CCWWGG 3 cut(s) 389, 730, 1177
Bst2UI CCWGG 2 cut(s) 144, 1011
Bst4CI ACNGT 5 cut(s) 53, 203, 293, 580, 1336
Bst6I CTCTTC 1 cut(s) 57
BstBAI YACGTR 1 cut(s) 257
BstC8I GCNNGC 3 cut(s) 508, 655, 690
BstDEI CTNAG 5 cut(s) 117, 285, 607, 891, 1148
BstDSI CCRYGG 1 cut(s) 730
BstENI CCTNNNNNAGG 2 cut(s) 591, 606
BstF5I GGATG 2 cut(s) 385, 520
BstFNI CGCG 1 cut(s) 1242
BstHHI GCGC 1 cut(s) 1242
BstKTI GATC 6 cut(s) 139, 368, 488, 566, 791, 1081
BstMAI GTCTC 2 cut(s) 1146, 1181
BstMBI GATC 6 cut(s) 136, 365, 485, 563, 788, 1078
BstMWI GCNNNNNNNGC 4 cut(s) 554, 886, 977, 1129
BstNI CCWGG 2 cut(s) 144, 1011
BstNSI RCATGY 3 cut(s) 478, 510, 924
BstPAI GACNNNNGTC 1 cut(s) 12
BstSCI CCNGG 2 cut(s) 142, 1009
BstSFI CTRYAG 1 cut(s) 690
BstUI CGCG 1 cut(s) 1242
BstV1I GCAGC 2 cut(s) 268, 1116
BstV2I GAAGAC 2 cut(s) 350, 762
BstX2I RGATCY 1 cut(s) 788
BstYI RGATCY 1 cut(s) 788
BsuRI GGCC 2 cut(s) 657, 880
BtgI CCRYGG 1 cut(s) 730
BtsCI GGATG 2 cut(s) 385, 520
BtsIMutI CAGTG 2 cut(s) 298, 912
BveI ACCTGC 4 cut(s) 511, 562, 733, 832
Cac8I GCNNGC 3 cut(s) 508, 655, 690
CaiI CAGNNNCTG 3 cut(s) 22, 201, 1164
CfoI GCGC 1 cut(s) 1242
Cfr10I RCCGGY 1 cut(s) 897
Cfr13I GGNCC 5 cut(s) 410, 500, 656, 1061, 1225
CsiI ACCWGGT 1 cut(s) 142
Csp6I GTAC 6 cut(s) 289, 551, 599, 901, 1042, 1337
CviAII CATG 8 cut(s) 442, 475, 489, 507, 731, 921, 1023, 1039
CviQI GTAC 6 cut(s) 289, 551, 599, 901, 1042, 1337
DdeI CTNAG 5 cut(s) 117, 285, 607, 891, 1148
DpnI GATC 6 cut(s) 138, 367, 487, 565, 790, 1080
DpnII GATC 6 cut(s) 136, 365, 485, 563, 788, 1078
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
EciI GGCGGA 1 cut(s) 696
Eco130I CCWWGG 3 cut(s) 389, 730, 1177
Eco147I AGGCCT 1 cut(s) 880
Eco24I GRGCYC 1 cut(s) 764
Eco47I GGWCC 4 cut(s) 410, 500, 1061, 1225
Eco57I CTGAAG 3 cut(s) 44, 362, 576
EcoNI CCTNNNNNAGG 2 cut(s) 591, 606
EcoRII CCWGG 2 cut(s) 142, 1009
EcoT14I CCWWGG 3 cut(s) 389, 730, 1177
EcoT22I ATGCAT 1 cut(s) 447
EcoT38I GRGCYC 1 cut(s) 764
ErhI CCWWGG 3 cut(s) 389, 730, 1177
Esp3I CGTCTC 1 cut(s) 1146
FaeI CATG 8 cut(s) 445, 478, 492, 510, 734, 924, 1026, 1042
FaqI GGGAC 2 cut(s) 364, 407
FatI CATG 8 cut(s) 441, 474, 488, 506, 730, 920, 1022, 1038
FauI CCCGC 1 cut(s) 323
FauNDI CATATG 1 cut(s) 646
FbaI TGATCA 1 cut(s) 1078
Fnu4HI GCNGC 2 cut(s) 282, 1130
FokI GGATG 2 cut(s) 372, 507
FriOI GRGCYC 1 cut(s) 764
Fsp4HI GCNGC 2 cut(s) 282, 1130
FspBI CTAG 1 cut(s) 777
GlaI GCGC 1 cut(s) 1241
GluI GCNGC 2 cut(s) 282, 1130
GsaI CCCAGC 1 cut(s) 529
GsuI CTGGAG 1 cut(s) 793
HaeIII GGCC 2 cut(s) 657, 880
HapII CCGG 2 cut(s) 898, 1101
HhaI GCGC 1 cut(s) 1242
Hin1II CATG 8 cut(s) 445, 478, 492, 510, 734, 924, 1026, 1042
Hin6I GCGC 1 cut(s) 1240
HinP1I GCGC 1 cut(s) 1240
HincII GTYRAC 1 cut(s) 81
HindII GTYRAC 1 cut(s) 81
HinfI GANTC 5 cut(s) 824, 974, 1047, 1136, 1280
HpaII CCGG 2 cut(s) 898, 1101
HphI GGTGA 7 cut(s) 158, 206, 247, 944, 1073, 1299, 1308
Hpy166II GTNNAC 5 cut(s) 81, 149, 599, 614, 847
Hpy188I TCNGA 6 cut(s) 24, 49, 342, 1254, 1261, 1330
Hpy188III TCNNGA 5 cut(s) 449, 810, 1005, 1217, 1274
Hpy8I GTNNAC 5 cut(s) 81, 149, 599, 614, 847
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 1 cut(s) 597
HpyCH4III ACNGT 5 cut(s) 53, 203, 293, 580, 1336
HpyCH4IV ACGT 2 cut(s) 256, 661
HpyF10VI GCNNNNNNNGC 4 cut(s) 554, 886, 977, 1129
HpyF3I CTNAG 5 cut(s) 117, 285, 607, 891, 1148
HpySE526I ACGT 2 cut(s) 256, 661
Hsp92II CATG 8 cut(s) 445, 478, 492, 510, 734, 924, 1026, 1042
HspAI GCGC 1 cut(s) 1240
Ksp22I TGATCA 1 cut(s) 1078
Kzo9I GATC 6 cut(s) 136, 365, 485, 563, 788, 1078
LmnI GCTCC 3 cut(s) 404, 932, 1177
Lsp1109I GCAGC 2 cut(s) 268, 1116
LweI GCATC 1 cut(s) 454
MabI ACCWGGT 1 cut(s) 142
MaeI CTAG 1 cut(s) 777
MaeII ACGT 2 cut(s) 256, 661
MaeIII GTNAC 3 cut(s) 197, 1103, 1314
MalI GATC 6 cut(s) 138, 367, 487, 565, 790, 1080
MboI GATC 6 cut(s) 136, 365, 485, 563, 788, 1078
MboII GAAGA 8 cut(s) 37, 74, 355, 464, 582, 762, 1289, 1314
MflI RGATCY 1 cut(s) 788
MhlI GDGCHC 2 cut(s) 643, 764
MluCI AATT 4 cut(s) 244, 377, 1111, 1211
MmeI TCCRAC 2 cut(s) 72, 295
Mph1103I ATGCAT 1 cut(s) 447
MseI TTAA 1 cut(s) 210
MslI CAYNNNNRTG 1 cut(s) 255
MspI CCGG 2 cut(s) 898, 1101
MspR9I CCNGG 2 cut(s) 144, 1011
Mva1269I GAATGC 3 cut(s) 34, 780, 944
MvaI CCWGG 2 cut(s) 144, 1011
MvnI CGCG 1 cut(s) 1242
MwoI GCNNNNNNNGC 4 cut(s) 554, 886, 977, 1129
NcoI CCATGG 1 cut(s) 730
NdeI CATATG 1 cut(s) 646
NdeII GATC 6 cut(s) 136, 365, 485, 563, 788, 1078
NlaIII CATG 8 cut(s) 445, 478, 492, 510, 734, 924, 1026, 1042
NlaIV GGNNCC 2 cut(s) 55, 1272
NmuCI GTSAC 1 cut(s) 1314
NsiI ATGCAT 1 cut(s) 447
NspI RCATGY 3 cut(s) 478, 510, 924
PaeI GCATGC 1 cut(s) 510
PceI AGGCCT 1 cut(s) 880
PciI ACATGT 1 cut(s) 920
PcsI WCGNNNNNNNCGW 1 cut(s) 262
PctI GAATGC 3 cut(s) 34, 780, 944
PfeI GAWTC 5 cut(s) 824, 974, 1047, 1136, 1280
PflMI CCANNNNNTGG 2 cut(s) 539, 1164
PkrI GCNGC 2 cut(s) 283, 1131
Ppu21I YACGTR 1 cut(s) 257
PscI ACATGT 1 cut(s) 920
PshAI GACNNNNGTC 1 cut(s) 12
Psp6I CCWGG 2 cut(s) 142, 1009
PspFI CCCAGC 1 cut(s) 525
PspGI CCWGG 2 cut(s) 142, 1009
PspN4I GGNNCC 2 cut(s) 55, 1272
PspPI GGNCC 5 cut(s) 410, 500, 656, 1061, 1225
PstI CTGCAG 1 cut(s) 694
PstNI CAGNNNCTG 3 cut(s) 22, 201, 1164
PsuI RGATCY 1 cut(s) 788
RsaI GTAC 6 cut(s) 290, 552, 600, 902, 1043, 1338
RsaNI GTAC 6 cut(s) 289, 551, 599, 901, 1042, 1337
RseI CAYNNNNRTG 1 cut(s) 255
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 2 cut(s) 282, 1130
Sau3AI GATC 6 cut(s) 136, 365, 485, 563, 788, 1078
Sau96I GGNCC 5 cut(s) 410, 500, 656, 1061, 1225
ScrFI CCNGG 2 cut(s) 144, 1011
SduI GDGCHC 2 cut(s) 643, 764
SexAI ACCWGGT 1 cut(s) 142
SfaNI GCATC 1 cut(s) 454
SfcI CTRYAG 1 cut(s) 690
SinI GGWCC 4 cut(s) 410, 500, 1061, 1225
SmiMI CAYNNNNRTG 1 cut(s) 255
SmlI CTYRAG 3 cut(s) 711, 757, 1003
SmoI CTYRAG 3 cut(s) 711, 757, 1003
SphI GCATGC 1 cut(s) 510
Sse9I AATT 4 cut(s) 244, 377, 1111, 1211
SseBI AGGCCT 1 cut(s) 880
SsiI CCGC 5 cut(s) 76, 330, 707, 978, 1145
SspMI CTAG 1 cut(s) 777
StuI AGGCCT 1 cut(s) 880
StyD4I CCNGG 2 cut(s) 142, 1009
StyI CCWWGG 3 cut(s) 389, 730, 1177
TaaI ACNGT 5 cut(s) 53, 203, 293, 580, 1336
TaiI ACGT 2 cut(s) 259, 664
TaqI TCGA 2 cut(s) 139, 773
TasI AATT 4 cut(s) 244, 377, 1111, 1211
TatI WGTACW 1 cut(s) 288
TfiI GAWTC 5 cut(s) 824, 974, 1047, 1136, 1280
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 2 cut(s) 298, 919
TseFI GTSAC 1 cut(s) 1314
TseI GCWGC 2 cut(s) 281, 1129
Tsp45I GTSAC 1 cut(s) 1314
TspDTI ATGAA 2 cut(s) 506, 923
TspGWI ACGGA 2 cut(s) 1059, 1302
TspRI CASTG 2 cut(s) 298, 919
Van91I CCANNNNNTGG 2 cut(s) 539, 1164
VpaK11BI GGWCC 4 cut(s) 410, 500, 1061, 1225
XagI CCTNNNNNAGG 2 cut(s) 591, 606
XapI RAATTY 2 cut(s) 377, 1211
XceI RCATGY 3 cut(s) 478, 510, 924
XcmI CCANNNNNNNNNTGG 1 cut(s) 104
XspI CTAG 1 cut(s) 777
Zsp2I ATGCAT 1 cut(s) 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.