Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002970

Physical Location & Seq

Genomic Coordinates Reverse (-)

21490586 .. 21495497

Gene Structure 4912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G209200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGAGTTTGATTGGCGAAACTGAGAAAAGCAGAGCAAAGCAAAACAAAGGCCGGGTGTACACAACCTCTGTGCTACCGATGCCAGACACTCGGCAGGCCCAGAAGAATGCTGTTCCGAATCAATCCGATGGCAACGTTGAAGAGGCATTTTGGCGGTTGACTATCAACGATAATCAAGATGGGGGCGGTGTGGCTCAGTCTAACCCATACCCTGATCGACCTGGTGAACCTGACTGCATATATTATTTGAGGACTGGTTTGTGTGGTTATGGAAGTAATTGTCGTTTTAATCACCCTAAATATGGTTCACAGGGTGCTCAGTACAATGGAGAACTCCCTGAAAGAGTTGGACAACCTGACTGTGGGTATTTTCTGAAGACAGGAACTTGCAAATATGGATCAACCTGTAAATTCCATCATCCAAGGGACAGGCGTGGAGCTGGACCAGTCGTATTCAACATTTTAGGACTCCCCATGCATCAGGAAGAAAAGTCATGTCCTTATTACATGCGAACTGGATCGTGCAAGTTTGGACCTGCATGCAAGTTTCATCATCCCCAGCCTCAGTCACTTGGCACTGTCTTACCTGCTTTTGGAGCTGCAGGCTCCACAGTTTTGCCTTCTTCAGGTCTACCTTATGCAGGTGGACTTTCTGCATGGTCATTTCCAAGAGCGCCATATTTATCAGGCCCACGTTTACAATCTCCACATTCTTACATGCCTGTTGTTCTTCCGCCCCAAGGCATTGTACCTGCCCATGGATGGAACACATATGTGGGAAACATTAGCCCTGTGACTTCCACTGGAATTCTTGGCTCCAACCTCACATACAACTCTAGAACTCGGGGGGAGTCAGCTGCCAATGGACAGGTTCACTTGTCAAGCTCAAGTCTCCCACATAGGCCTGATCAACCTGAATGCCGGTATTTTATGAGCACGGGGACTTGCAAATATGGAATAGATTGCAAGTACCATCACCCAAAAGAAAGGATTGCAGAATCAGCTACACACCCACTTGGGCTTCCCTCAAGACCTGGGCAACCACCATGTTCATACTACATCATGTATGGAATCTGCAAGTATGGACCAACTTGCAGATTCGATCACCCGTTTGTGGAACATTCTGCTGGCTATAATTTTGGTATGAATGCTTTGCCACTTGATTCCTCCCTCCTAAGTTATCCCAGAAGCTGGTCAGTGGCCCATGGATTAGAGACTTCCCCCTCCATCTCCTCAAAATTTCCTGATGGGGCCAAAAAACCTGTGAACAACAAGTATGAGAACTCAGATACAAAAACTGCTGAAGATTCCCCTGAACAAGCTGGTTCTGTACCACCTTCTCCCACTTCCTCAGAACCCGTACAAGACCAATCTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

460

Amino Acids

49.88

Weight (kDa)

8.6

Isoelectric Point (pI)

58.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04990 AT1G04990 AT1G04990 AT1G04990 AT1G04990 AT1G04990 AT2G32930 AT2G32930 AT2G32930
fragaria_vesca	FvH4_3g13621 FvH4_6g42010 FvH4_6g42010
malus_domestica	MD03G1135600.v1.1 MD03G1279200.v1.1 MD03G1279800.v1.1 MD05G1053000.v1.1 MD06G1100700.v1.1 MD09G1115400.v1.1 MD10G1110500.v1.1 MD17G1107000.v1.1
prunus_persica	Prupe.3G209200_v2.0.a1 Prupe.3G209200_v2.0.a1
pyrus_communis	pycom09g03970 pycom09g03980 pycom17g09960
rosa_chinensis	RchiOBHm_Chr2g0157941
rosa_laevigata	RLG00000021036
rosa_multiflora	Rmu_sc0011758.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091850
rosa_rugosa	Rorug01G0068500 Rorug02G0304500.1 Rorug02G0464400
rosa_samantha	Rh2AG529800 Rh2BG544500 Rh2CG514200 Rh2DG552800 Rh5BG160500
rosa_wichuraiana	Rw2G043860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	632
Acc36I	ACCTGC	4 cut(s)	544, 595, 632, 760
AccB7I	CCANNNNNTGG	1 cut(s)	1191
AccI	GTMKAC	1 cut(s)	631
AciI	CCGC	3 cut(s)	154, 186, 734
AclI	AACGTT	1 cut(s)	135
AclWI	GGATC	2 cut(s)	406, 526
AcsI	RAATTY	3 cut(s)	410, 807, 1238
AcuI	CTGAAG	3 cut(s)	395, 609, 1323
AdeI	CACNNNGTG	1 cut(s)	314
AfaI	GTAC	6 cut(s)	59, 323, 750, 971, 1332, 1362
AgsI	TTSAA	2 cut(s)	140, 457
AjnI	CCWGG	2 cut(s)	220, 1033
AleI	CACNNNNGTG	1 cut(s)	773
AluBI	AGCT	7 cut(s)	440, 599, 857, 885, 1004, 1191, 1322
AluI	AGCT	7 cut(s)	440, 599, 857, 885, 1004, 1191, 1322
Alw21I	GWGCWC	2 cut(s)	319, 938
Alw26I	GTCTC	2 cut(s)	896, 1208
AlwI	GGATC	2 cut(s)	406, 526
AlwNI	CAGNNNCTG	1 cut(s)	1191
Ama87I	CYCGRG	1 cut(s)	843
AoxI	GGCC	6 cut(s)	49, 96, 688, 902, 1200, 1251
ApeKI	GCWGC	2 cut(s)	599, 857
ApoI	RAATTY	3 cut(s)	410, 807, 1238
AspLEI	GCGC	1 cut(s)	676
AspS9I	GGNCC	7 cut(s)	97, 443, 533, 689, 1085, 1201, 1251
AsuC2I	CCSGG	1 cut(s)	53
AsuHPI	GGTGA	4 cut(s)	236, 284, 968, 1097
AvaI	CYCGRG	1 cut(s)	843
AvaII	GGWCC	3 cut(s)	443, 533, 1085
BbsI	GAAGAC	1 cut(s)	383
Bbv12I	GWGCWC	2 cut(s)	319, 938
BbvI	GCAGC	2 cut(s)	586, 844
BccI	CCATC	7 cut(s)	122, 173, 423, 756, 981, 1235, 1241
BciT130I	CCWGG	2 cut(s)	222, 1035
BclI	TGATCA	1 cut(s)	907
BcnI	CCSGG	1 cut(s)	53
BcoDI	GTCTC	2 cut(s)	896, 1208
BfaI	CTAG	1 cut(s)	837
BfmI	CTRYAG	1 cut(s)	600
BfoI	RGCGCY	1 cut(s)	677
BfuAI	ACCTGC	4 cut(s)	544, 595, 632, 760
BisI	GCNGC	2 cut(s)	600, 858
BlsI	GCNGC	2 cut(s)	601, 859
Bme1390I	CCNGG	3 cut(s)	53, 222, 1035
Bme18I	GGWCC	3 cut(s)	443, 533, 1085
BmeT110I	CYCGRG	1 cut(s)	843
BmgT120I	GGNCC	7 cut(s)	97, 443, 533, 689, 1085, 1201, 1251
BmiI	GGNNCC	3 cut(s)	607, 817, 1252
BmrFI	CCNGG	3 cut(s)	53, 222, 1035
BmsI	GCATC	2 cut(s)	69, 487
BpiI	GAAGAC	1 cut(s)	383
BpuEI	CTTGAG	2 cut(s)	871, 1012
BpuMI	CCSGG	1 cut(s)	53
BsaJI	CCNNGG	5 cut(s)	422, 739, 757, 1034, 1204
Bse118I	RCCGGY	1 cut(s)	921
Bse1I	ACTGG	4 cut(s)	259, 446, 520, 808
BseBI	CCWGG	2 cut(s)	222, 1035
BseDI	CCNNGG	5 cut(s)	422, 739, 757, 1034, 1204
BseGI	GGATG	3 cut(s)	418, 553, 767
BseMII	CTCAG	6 cut(s)	12, 209, 332, 578, 1299, 1365
BseNI	ACTGG	4 cut(s)	259, 446, 520, 808
BseRI	GAGGAG	1 cut(s)	1222
BseXI	GCAGC	2 cut(s)	586, 844
BseYI	CCCAGC	1 cut(s)	558
BshFI	GGCC	6 cut(s)	51, 98, 690, 904, 1202, 1253
BsiHKAI	GWGCWC	2 cut(s)	319, 938
BsiHKCI	CYCGRG	1 cut(s)	843
BsiSI	CCGG	2 cut(s)	52, 922
BslFI	GGGAC	2 cut(s)	440, 955
BsmAI	GTCTC	2 cut(s)	896, 1208
BsmFI	GGGAC	2 cut(s)	440, 955
BsmI	GAATGC	3 cut(s)	112, 923, 1153
BsnI	GGCC	6 cut(s)	51, 98, 690, 904, 1202, 1253
BsoBI	CYCGRG	1 cut(s)	843
Bsp1286I	GDGCHC	2 cut(s)	319, 938
Bsp1407I	TGTACA	1 cut(s)	57
Bsp143I	GATC	5 cut(s)	214, 398, 518, 907, 1102
Bsp19I	CCATGG	2 cut(s)	757, 1204
BspACI	CCGC	3 cut(s)	154, 186, 734
BspANI	GGCC	6 cut(s)	51, 98, 690, 904, 1202, 1253
BspCNI	CTCAG	6 cut(s)	13, 208, 331, 577, 1298, 1364
BspLI	GGNNCC	3 cut(s)	607, 817, 1252
BspMAI	CTGCAG	1 cut(s)	604
BspMI	ACCTGC	4 cut(s)	544, 595, 632, 760
BspPI	GGATC	2 cut(s)	406, 526
BsrFI	RCCGGY	1 cut(s)	921
BsrGI	TGTACA	1 cut(s)	57
BsrI	ACTGG	4 cut(s)	259, 446, 520, 808
BssAI	RCCGGY	1 cut(s)	921
BssECI	CCNNGG	5 cut(s)	422, 739, 757, 1034, 1204
BssMI	GATC	5 cut(s)	214, 398, 518, 907, 1102
BssT1I	CCWWGG	4 cut(s)	422, 739, 757, 1204
Bst2UI	CCWGG	2 cut(s)	222, 1035
Bst4CI	ACNGT	3 cut(s)	362, 580, 613
Bst6I	CTCTTC	1 cut(s)	135
BstAUI	TGTACA	1 cut(s)	57
BstC8I	GCNNGC	4 cut(s)	96, 541, 604, 1129
BstDEI	CTNAG	7 cut(s)	21, 195, 318, 564, 1175, 1285, 1351
BstDSI	CCRYGG	2 cut(s)	757, 1204
BstENI	CCTNNNNNAGG	2 cut(s)	624, 639
BstF5I	GGATG	3 cut(s)	418, 553, 767
BstH2I	RGCGCY	1 cut(s)	677
BstHHI	GCGC	1 cut(s)	676
BstKTI	GATC	5 cut(s)	217, 401, 521, 910, 1105
BstMAI	GTCTC	2 cut(s)	896, 1208
BstMBI	GATC	5 cut(s)	214, 398, 518, 907, 1102
BstMWI	GCNNNNNNNGC	3 cut(s)	79, 596, 1001
BstNI	CCWGG	2 cut(s)	222, 1035
BstNSI	RCATGY	3 cut(s)	511, 543, 721
BstSCI	CCNGG	3 cut(s)	51, 220, 1033
BstSFI	CTRYAG	1 cut(s)	600
BstV1I	GCAGC	2 cut(s)	586, 844
BstV2I	GAAGAC	1 cut(s)	383
BsuRI	GGCC	6 cut(s)	51, 98, 690, 904, 1202, 1253
BtgI	CCRYGG	2 cut(s)	757, 1204
BtsCI	GGATG	3 cut(s)	418, 553, 767
BtsIMutI	CAGTG	3 cut(s)	576, 801, 1203
BveI	ACCTGC	4 cut(s)	544, 595, 632, 760
Cac8I	GCNNGC	4 cut(s)	96, 541, 604, 1129
CaiI	CAGNNNCTG	1 cut(s)	1191
CfoI	GCGC	1 cut(s)	676
Cfr10I	RCCGGY	1 cut(s)	921
Cfr13I	GGNCC	7 cut(s)	97, 443, 533, 689, 1085, 1201, 1251
CsiI	ACCWGGT	1 cut(s)	220
Csp6I	GTAC	6 cut(s)	58, 322, 749, 970, 1331, 1361
CviQI	GTAC	6 cut(s)	58, 322, 749, 970, 1331, 1361
DdeI	CTNAG	7 cut(s)	21, 195, 318, 564, 1175, 1285, 1351
DpnI	GATC	5 cut(s)	216, 400, 520, 909, 1104
DpnII	GATC	5 cut(s)	214, 398, 518, 907, 1102
DraIII	CACNNNGTG	1 cut(s)	314
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
EciI	GGCGGA	1 cut(s)	723
Eco130I	CCWWGG	4 cut(s)	422, 739, 757, 1204
Eco147I	AGGCCT	1 cut(s)	904
Eco47I	GGWCC	3 cut(s)	443, 533, 1085
Eco57I	CTGAAG	3 cut(s)	395, 609, 1323
Eco88I	CYCGRG	1 cut(s)	843
EcoNI	CCTNNNNNAGG	2 cut(s)	624, 639
EcoRI	GAATTC	1 cut(s)	807
EcoRII	CCWGG	2 cut(s)	220, 1033
EcoT14I	CCWWGG	4 cut(s)	422, 739, 757, 1204
EcoT22I	ATGCAT	1 cut(s)	480
ErhI	CCWWGG	4 cut(s)	422, 739, 757, 1204
FaqI	GGGAC	2 cut(s)	440, 955
FauNDI	CATATG	1 cut(s)	772
FbaI	TGATCA	1 cut(s)	907
FblI	GTMKAC	1 cut(s)	631
Fnu4HI	GCNGC	2 cut(s)	600, 858
FokI	GGATG	3 cut(s)	405, 540, 774
Fsp4HI	GCNGC	2 cut(s)	600, 858
FspBI	CTAG	1 cut(s)	837
GlaI	GCGC	1 cut(s)	675
GluI	GCNGC	2 cut(s)	600, 858
GsaI	CCCAGC	1 cut(s)	562
HaeII	RGCGCY	1 cut(s)	677
HaeIII	GGCC	6 cut(s)	51, 98, 690, 904, 1202, 1253
HapII	CCGG	2 cut(s)	52, 922
HhaI	GCGC	1 cut(s)	676
Hin6I	GCGC	1 cut(s)	674
HinP1I	GCGC	1 cut(s)	674
HincII	GTYRAC	1 cut(s)	159
HindII	GTYRAC	1 cut(s)	159
HinfI	GANTC	8 cut(s)	118, 468, 851, 998, 1071, 1098, 1163, 1307
HpaII	CCGG	2 cut(s)	52, 922
HphI	GGTGA	4 cut(s)	236, 284, 968, 1097
Hpy188I	TCNGA	5 cut(s)	117, 127, 375, 1288, 1354
Hpy188III	TCNNGA	5 cut(s)	176, 482, 837, 1029, 1244
HpyAV	CCTTC	2 cut(s)	630, 1347
HpyCH4III	ACNGT	3 cut(s)	362, 580, 613
HpyCH4IV	ACGT	2 cut(s)	135, 694
HpyF10VI	GCNNNNNNNGC	3 cut(s)	79, 596, 1001
HpyF3I	CTNAG	7 cut(s)	21, 195, 318, 564, 1175, 1285, 1351
HpySE526I	ACGT	2 cut(s)	135, 694
HspAI	GCGC	1 cut(s)	674
Ksp22I	TGATCA	1 cut(s)	907
Kzo9I	GATC	5 cut(s)	214, 398, 518, 907, 1102
LmnI	GCTCC	4 cut(s)	437, 596, 611, 821
Lsp1109I	GCAGC	2 cut(s)	586, 844
LweI	GCATC	2 cut(s)	69, 487
MabI	ACCWGGT	1 cut(s)	220
MaeI	CTAG	1 cut(s)	837
MaeII	ACGT	2 cut(s)	135, 694
MaeIII	GTNAC	2 cut(s)	567, 793
MalI	GATC	5 cut(s)	216, 400, 520, 909, 1104
MboI	GATC	5 cut(s)	214, 398, 518, 907, 1102
MboII	GAAGA	7 cut(s)	115, 152, 388, 497, 615, 722, 1316
MhlI	GDGCHC	2 cut(s)	319, 938
MluCI	AATT	5 cut(s)	277, 410, 807, 1135, 1238
MlyI	GAGTC	2 cut(s)	462, 860
MmeI	TCCRAC	2 cut(s)	328, 843
Mph1103I	ATGCAT	1 cut(s)	480
MseI	TTAA	1 cut(s)	288
MslI	CAYNNNNRTG	1 cut(s)	773
MspA1I	CMGCKG	1 cut(s)	857
MspI	CCGG	2 cut(s)	52, 922
MspR9I	CCNGG	3 cut(s)	53, 222, 1035
Mva1269I	GAATGC	3 cut(s)	112, 923, 1153
MvaI	CCWGG	2 cut(s)	222, 1035
MwoI	GCNNNNNNNGC	3 cut(s)	79, 596, 1001
NciI	CCSGG	1 cut(s)	53
NcoI	CCATGG	2 cut(s)	757, 1204
NdeI	CATATG	1 cut(s)	772
NdeII	GATC	5 cut(s)	214, 398, 518, 907, 1102
NlaIV	GGNNCC	3 cut(s)	607, 817, 1252
NmeAIII	GCCGAG	1 cut(s)	70
NmuCI	GTSAC	2 cut(s)	567, 793
NsiI	ATGCAT	1 cut(s)	480
NspI	RCATGY	3 cut(s)	511, 543, 721
OliI	CACNNNNGTG	1 cut(s)	773
PaeI	GCATGC	1 cut(s)	543
PaqCI	CACCTGC	1 cut(s)	632
PceI	AGGCCT	1 cut(s)	904
PctI	GAATGC	3 cut(s)	112, 923, 1153
PfeI	GAWTC	6 cut(s)	118, 998, 1071, 1098, 1163, 1307
PflMI	CCANNNNNTGG	1 cut(s)	1191
PkrI	GCNGC	2 cut(s)	601, 859
PleI	GAGTC	2 cut(s)	462, 859
PpsI	GAGTC	2 cut(s)	462, 859
Psp1406I	AACGTT	1 cut(s)	135
Psp6I	CCWGG	2 cut(s)	220, 1033
PspFI	CCCAGC	1 cut(s)	558
PspGI	CCWGG	2 cut(s)	220, 1033
PspN4I	GGNNCC	3 cut(s)	607, 817, 1252
PspPI	GGNCC	7 cut(s)	97, 443, 533, 689, 1085, 1201, 1251
PstI	CTGCAG	1 cut(s)	604
PstNI	CAGNNNCTG	1 cut(s)	1191
PvuII	CAGCTG	1 cut(s)	857
RsaI	GTAC	6 cut(s)	59, 323, 750, 971, 1332, 1362
RsaNI	GTAC	6 cut(s)	58, 322, 749, 970, 1331, 1361
RseI	CAYNNNNRTG	1 cut(s)	773
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	2 cut(s)	600, 858
Sau3AI	GATC	5 cut(s)	214, 398, 518, 907, 1102
Sau96I	GGNCC	7 cut(s)	97, 443, 533, 689, 1085, 1201, 1251
SchI	GAGTC	2 cut(s)	462, 860
ScrFI	CCNGG	3 cut(s)	53, 222, 1035
SduI	GDGCHC	2 cut(s)	319, 938
SexAI	ACCWGGT	1 cut(s)	220
SfaNI	GCATC	2 cut(s)	69, 487
SfcI	CTRYAG	1 cut(s)	600
SinI	GGWCC	3 cut(s)	443, 533, 1085
SmiMI	CAYNNNNRTG	1 cut(s)	773
SmlI	CTYRAG	2 cut(s)	886, 1027
SmoI	CTYRAG	2 cut(s)	886, 1027
SphI	GCATGC	1 cut(s)	543
Sse9I	AATT	5 cut(s)	277, 410, 807, 1135, 1238
SseBI	AGGCCT	1 cut(s)	904
SsiI	CCGC	3 cut(s)	154, 186, 734
SspMI	CTAG	1 cut(s)	837
StuI	AGGCCT	1 cut(s)	904
StyD4I	CCNGG	3 cut(s)	51, 220, 1033
StyI	CCWWGG	4 cut(s)	422, 739, 757, 1204
TaaI	ACNGT	3 cut(s)	362, 580, 613
TaiI	ACGT	2 cut(s)	138, 697
TaqI	TCGA	2 cut(s)	217, 1101
TasI	AATT	5 cut(s)	277, 410, 807, 1135, 1238
TatI	WGTACW	2 cut(s)	57, 321
TfiI	GAWTC	6 cut(s)	118, 998, 1071, 1098, 1163, 1307
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TscAI	CASTG	3 cut(s)	583, 808, 1203
TseFI	GTSAC	2 cut(s)	567, 793
TseI	GCWGC	2 cut(s)	599, 857
Tsp45I	GTSAC	2 cut(s)	567, 793
TspDTI	ATGAA	3 cut(s)	539, 1041, 1160
TspRI	CASTG	3 cut(s)	583, 808, 1203
Van91I	CCANNNNNTGG	1 cut(s)	1191
VpaK11BI	GGWCC	3 cut(s)	443, 533, 1085
XagI	CCTNNNNNAGG	2 cut(s)	624, 639
XapI	RAATTY	3 cut(s)	410, 807, 1238
XbaI	TCTAGA	1 cut(s)	836
XceI	RCATGY	3 cut(s)	511, 543, 721
XmiI	GTMKAC	1 cut(s)	631
XspI	CTAG	1 cut(s)	837
Zsp2I	ATGCAT	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.