RLG00000021036

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0002970
Physical Location & Seq
Reverse (-)
71232659 .. 71236729
4071 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021036

Sequence Viewer

Length: 1311 bp
ATGCCAGACACTCGGCAGGCTCTGAAGAATGCCGTTCCCAATCAATCCGACGGTACCGTTGAAGAGACGTTTTGGCGGTTGACAATCAATGAGAATCAAGATGGGGGTGGTGTGGCTCAGTCTAACCTATACCCTGATCGACCTGGTGAACCCGATTGCATATATTATTTGAGGACTGGGTTGTGTGGTTATGGCAGTAATTGTCGGTTTAATCACCCTAAATATGCTTCACAGGCTGCTCAGTACAGTGGAGAACTCCCTGAAAGAGTTGGACAACCTGACTGCGGGTATTATCTGAAGACAGGGACTTGCAAATATGGATCAACCTGTAAATTCCATCATCCAAGGGACAGGCGTGGAGCTGGCCCAGTTTTATTCAACATATTAGGACTGCCCATGCATCAGGAAGAAAAATCCTGTCCATATTACATGCGAACTGGATCATGCAAGTTTGGATCTGCATGCAAGTTTCATCATCCCCAGCCTCCGTCATTTGGAACTGCCGTACCTGCTTTTGGATCTGCAGGCTCAACAGTTGTGCCTTCTTCAGGTGTACCTTACTCGGGTGGACTTTCTGCGTGGTCATTTCCAAGAGCACCATATGTAGCGGGCCCACGTTTAGCAACTCCTCAACCTTACATGCCTGCAGTTGTTCTTTCTCCGCCTCAAGGCGTTCTGCCTGCCCATGGCTGGAATACCTATGTGGGAAACTTGAGCCCTGTGTCTTCGACTAGCATTCTTGGATCTAATCTTGCGTACAACTCCAGAAGTCAGGGGGAATCAGCTTCCAATGGGCAGGTTCACTTGCCATCAAGTCCAAATCTTCCCCAGAGGCCTGACCAGCCTGAGTGCCGGTACTTTATGAACACTGGAACATGCAAATATGGAGCAGAATGCAAATACCATCACCCAAAAGAAAGGATTGCAGAATCCGCTACAAACCCACTTGGGCTTCCCTCAAGACCTGGGCAACTTGTATGTTCAAACTACATCATGTACGGAATCTGCAAGTATGGACCAACTTGCAGATTTGATCACCCCTTTGTGGAACATTCCGGTAACTATAATTTTGGTATGCCTATGCTGCTTGATTCATCTCCGCTAAGTTATCCCAGAAGCTGGATAGCTCCCCAAGGATTTGAGACTTCCCCCTCTATCTCATCAAAATTTCCTGATGTGGTCCAAAAACCAGAGAGCGAAAAATATCAGAACTCGGAAACAAAGGTTCCGGAAGAATCCCCTGAACGAGCTACTGGCACTTTACCTCCGTCACCATCTTCCTCCGAAACTGTACAAGACCAATCTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

437

Amino Acids

47.45

Weight (kDa)

7.85

Isoelectric Point (pI)

63.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH PF00642 48 - 74 2.2e-09 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 92 - 116 1e-09 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 138 - 161 3.9e-10 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 280 - 305 3.8e-10 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 326 - 347 2.5e-06 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 517, 787
Acc65I GGTACC 1 cut(s) 53
AccB1I GGYRCC 1 cut(s) 53
AccB7I CCANNNNNTGG 1 cut(s) 1119
AccIII TCCGGA 1 cut(s) 1228
AciI CCGC 6 cut(s) 76, 285, 608, 662, 933, 1100
AclWI GGATC 5 cut(s) 328, 448, 463, 526, 751
AcsI RAATTY 2 cut(s) 332, 1166
AcuI CTGAAG 3 cut(s) 44, 317, 531
AfaI GTAC 8 cut(s) 55, 245, 507, 555, 758, 857, 998, 1293
AgsI TTSAA 3 cut(s) 62, 379, 984
AjnI CCWGG 2 cut(s) 142, 964
AluBI AGCT 5 cut(s) 362, 785, 1119, 1127, 1250
AluI AGCT 5 cut(s) 362, 785, 1119, 1127, 1250
Alw21I GWGCWC 1 cut(s) 598
Alw26I GTCTC 2 cut(s) 59, 1136
AlwI GGATC 5 cut(s) 328, 448, 463, 526, 751
AlwNI CAGNNNCTG 2 cut(s) 22, 1119
Ama87I CYCGRG 1 cut(s) 562
Aor13HI TCCGGA 1 cut(s) 1228
AoxI GGCC 3 cut(s) 364, 610, 833
ApaI GGGCCC 1 cut(s) 614
ApeKI GCWGC 2 cut(s) 236, 1084
ApoI RAATTY 2 cut(s) 332, 1166
Asp718I GGTACC 1 cut(s) 53
AspS9I GGNCC 5 cut(s) 365, 610, 611, 1016, 1180
AsuHPI GGTGA 5 cut(s) 158, 206, 899, 1028, 1263
AvaI CYCGRG 1 cut(s) 562
AvaII GGWCC 2 cut(s) 1016, 1180
BaeGI GKGCMC 1 cut(s) 614
BaeI ACNNNNGTAYC 2 cut(s) 489, 522
BanI GGYRCC 1 cut(s) 53
BanII GRGCYC 2 cut(s) 614, 719
BbsI GAAGAC 2 cut(s) 305, 717
Bbv12I GWGCWC 1 cut(s) 598
BbvI GCAGC 2 cut(s) 223, 1071
BccI CCATC 5 cut(s) 95, 345, 817, 912, 1282
BceAI ACGGC 2 cut(s) 17, 488
BciT130I CCWGG 2 cut(s) 144, 966
BclI TGATCA 1 cut(s) 1033
BcoDI GTCTC 2 cut(s) 59, 1136
BfaI CTAG 1 cut(s) 732
BfmI CTRYAG 2 cut(s) 522, 645
BfuAI ACCTGC 2 cut(s) 517, 787
BisI GCNGC 2 cut(s) 237, 1085
BlsI GCNGC 2 cut(s) 238, 1086
Bme1390I CCNGG 2 cut(s) 144, 966
Bme18I GGWCC 2 cut(s) 1016, 1180
BmeT110I CYCGRG 1 cut(s) 562
BmgT120I GGNCC 5 cut(s) 365, 610, 611, 1016, 1180
BmiI GGNNCC 3 cut(s) 55, 612, 1227
BmrFI CCNGG 2 cut(s) 144, 966
BmrI ACTGGG 2 cut(s) 186, 362
BmsI GCATC 1 cut(s) 409
BmuI ACTGGG 2 cut(s) 186, 362
BpiI GAAGAC 2 cut(s) 305, 717
BpmI CTGGAG 1 cut(s) 748
BpuEI CTTGAG 3 cut(s) 651, 733, 943
BsaJI CCNNGG 4 cut(s) 344, 685, 965, 1132
BsaWI WCCGGW 2 cut(s) 1055, 1228
BsaXI ACNNNNNCTCC 2 cut(s) 1249, 1279
Bse118I RCCGGY 1 cut(s) 852
Bse1I ACTGG 5 cut(s) 181, 368, 442, 874, 1258
BseAI TCCGGA 1 cut(s) 1228
BseBI CCWGG 2 cut(s) 144, 966
BseDI CCNNGG 4 cut(s) 344, 685, 965, 1132
BseGI GGATG 2 cut(s) 340, 475
BseMII CTCAG 3 cut(s) 131, 254, 837
BseNI ACTGG 5 cut(s) 181, 368, 442, 874, 1258
BseRI GAGGAG 1 cut(s) 618
BseSI GKGCMC 1 cut(s) 614
BseXI GCAGC 2 cut(s) 223, 1071
BseYI CCCAGC 1 cut(s) 480
BshFI GGCC 3 cut(s) 366, 612, 835
BshNI GGYRCC 1 cut(s) 53
BsiHKAI GWGCWC 1 cut(s) 598
BsiHKCI CYCGRG 1 cut(s) 562
BsiSI CCGG 3 cut(s) 853, 1056, 1229
BslFI GGGAC 2 cut(s) 319, 362
BsmAI GTCTC 2 cut(s) 59, 1136
BsmBI CGTCTC 1 cut(s) 59
BsmFI GGGAC 2 cut(s) 319, 362
BsmI GAATGC 3 cut(s) 34, 735, 899
BsnI GGCC 3 cut(s) 366, 612, 835
BsoBI CYCGRG 1 cut(s) 562
Bsp120I GGGCCC 1 cut(s) 610
Bsp1286I GDGCHC 3 cut(s) 598, 614, 719
Bsp13I TCCGGA 1 cut(s) 1228
Bsp1407I TGTACA 1 cut(s) 1291
Bsp143I GATC 7 cut(s) 136, 320, 440, 455, 518, 743, 1033
Bsp19I CCATGG 1 cut(s) 685
BspACI CCGC 6 cut(s) 76, 285, 608, 662, 933, 1100
BspANI GGCC 3 cut(s) 366, 612, 835
BspCNI CTCAG 3 cut(s) 130, 253, 838
BspEI TCCGGA 1 cut(s) 1228
BspLI GGNNCC 3 cut(s) 55, 612, 1227
BspMAI CTGCAG 2 cut(s) 526, 649
BspMI ACCTGC 2 cut(s) 517, 787
BspPI GGATC 5 cut(s) 328, 448, 463, 526, 751
BspT107I GGYRCC 1 cut(s) 53
BsrFI RCCGGY 1 cut(s) 852
BsrGI TGTACA 1 cut(s) 1291
BsrI ACTGG 5 cut(s) 181, 368, 442, 874, 1258
BssAI RCCGGY 1 cut(s) 852
BssECI CCNNGG 4 cut(s) 344, 685, 965, 1132
BssMI GATC 7 cut(s) 136, 320, 440, 455, 518, 743, 1033
BssT1I CCWWGG 3 cut(s) 344, 685, 1132
Bst2UI CCWGG 2 cut(s) 144, 966
Bst4CI ACNGT 5 cut(s) 53, 58, 248, 535, 1291
Bst6I CTCTTC 1 cut(s) 57
BstAUI TGTACA 1 cut(s) 1291
BstC8I GCNNGC 7 cut(s) 18, 364, 463, 526, 610, 645, 681
BstDEI CTNAG 4 cut(s) 117, 240, 846, 1103
BstDSI CCRYGG 1 cut(s) 685
BstENI CCTNNNNNAGG 1 cut(s) 546
BstF5I GGATG 2 cut(s) 340, 475
BstKTI GATC 7 cut(s) 139, 323, 443, 458, 521, 746, 1036
BstMAI GTCTC 2 cut(s) 59, 1136
BstMBI GATC 7 cut(s) 136, 320, 440, 455, 518, 743, 1033
BstMWI GCNNNNNNNGC 5 cut(s) 233, 509, 841, 932, 1084
BstNI CCWGG 2 cut(s) 144, 966
BstNSI RCATGY 4 cut(s) 433, 465, 643, 879
BstSCI CCNGG 2 cut(s) 142, 964
BstSFI CTRYAG 2 cut(s) 522, 645
BstSLI GKGCMC 1 cut(s) 614
BstV1I GCAGC 2 cut(s) 223, 1071
BstV2I GAAGAC 2 cut(s) 305, 717
BstX2I RGATCY 3 cut(s) 455, 518, 743
BstYI RGATCY 3 cut(s) 455, 518, 743
BsuRI GGCC 3 cut(s) 366, 612, 835
BtgI CCRYGG 1 cut(s) 685
BtsCI GGATG 2 cut(s) 340, 475
BtsIMutI CAGTG 2 cut(s) 253, 867
BveI ACCTGC 2 cut(s) 517, 787
Cac8I GCNNGC 7 cut(s) 18, 364, 463, 526, 610, 645, 681
CaiI CAGNNNCTG 2 cut(s) 22, 1119
Cfr10I RCCGGY 1 cut(s) 852
Cfr13I GGNCC 5 cut(s) 365, 610, 611, 1016, 1180
CsiI ACCWGGT 1 cut(s) 142
Csp6I GTAC 8 cut(s) 54, 244, 506, 554, 757, 856, 997, 1292
CviAII CATG 8 cut(s) 397, 430, 444, 462, 640, 686, 876, 994
CviQI GTAC 8 cut(s) 54, 244, 506, 554, 757, 856, 997, 1292
DdeI CTNAG 4 cut(s) 117, 240, 846, 1103
DpnI GATC 7 cut(s) 138, 322, 442, 457, 520, 745, 1035
DpnII GATC 7 cut(s) 136, 320, 440, 455, 518, 743, 1033
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
EciI GGCGGA 1 cut(s) 651
Eco130I CCWWGG 3 cut(s) 344, 685, 1132
Eco147I AGGCCT 1 cut(s) 835
Eco24I GRGCYC 2 cut(s) 614, 719
Eco47I GGWCC 2 cut(s) 1016, 1180
Eco57I CTGAAG 3 cut(s) 44, 317, 531
Eco88I CYCGRG 1 cut(s) 562
EcoNI CCTNNNNNAGG 1 cut(s) 546
EcoRII CCWGG 2 cut(s) 142, 964
EcoT14I CCWWGG 3 cut(s) 344, 685, 1132
EcoT22I ATGCAT 1 cut(s) 402
EcoT38I GRGCYC 2 cut(s) 614, 719
ErhI CCWWGG 3 cut(s) 344, 685, 1132
Esp3I CGTCTC 1 cut(s) 59
FaeI CATG 8 cut(s) 400, 433, 447, 465, 643, 689, 879, 997
FaqI GGGAC 2 cut(s) 319, 362
FatI CATG 8 cut(s) 396, 429, 443, 461, 639, 685, 875, 993
FauI CCCGC 2 cut(s) 278, 601
FauNDI CATATG 1 cut(s) 601
FbaI TGATCA 1 cut(s) 1033
Fnu4HI GCNGC 2 cut(s) 237, 1085
FokI GGATG 2 cut(s) 327, 462
FriOI GRGCYC 2 cut(s) 614, 719
Fsp4HI GCNGC 2 cut(s) 237, 1085
FspBI CTAG 1 cut(s) 732
GluI GCNGC 2 cut(s) 237, 1085
GsaI CCCAGC 1 cut(s) 484
GsuI CTGGAG 1 cut(s) 748
HaeIII GGCC 3 cut(s) 366, 612, 835
HapII CCGG 3 cut(s) 853, 1056, 1229
Hin1II CATG 8 cut(s) 400, 433, 447, 465, 643, 689, 879, 997
HincII GTYRAC 1 cut(s) 81
HindII GTYRAC 1 cut(s) 81
HinfI GANTC 6 cut(s) 94, 779, 929, 1002, 1091, 1235
HpaII CCGG 3 cut(s) 853, 1056, 1229
HphI GGTGA 5 cut(s) 158, 206, 899, 1028, 1263
Hpy166II GTNNAC 5 cut(s) 81, 149, 554, 569, 802
Hpy188I TCNGA 6 cut(s) 24, 49, 297, 1209, 1216, 1285
Hpy188III TCNNGA 6 cut(s) 98, 404, 765, 960, 1172, 1229
Hpy8I GTNNAC 5 cut(s) 81, 149, 554, 569, 802
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 1 cut(s) 552
HpyCH4III ACNGT 5 cut(s) 53, 58, 248, 535, 1291
HpyCH4IV ACGT 2 cut(s) 68, 616
HpyF10VI GCNNNNNNNGC 5 cut(s) 233, 509, 841, 932, 1084
HpyF3I CTNAG 4 cut(s) 117, 240, 846, 1103
HpySE526I ACGT 2 cut(s) 68, 616
Hsp92II CATG 8 cut(s) 400, 433, 447, 465, 643, 689, 879, 997
Kpn2I TCCGGA 1 cut(s) 1228
KpnI GGTACC 1 cut(s) 57
Ksp22I TGATCA 1 cut(s) 1033
Kzo9I GATC 7 cut(s) 136, 320, 440, 455, 518, 743, 1033
LmnI GCTCC 3 cut(s) 359, 887, 1132
Lsp1109I GCAGC 2 cut(s) 223, 1071
LweI GCATC 1 cut(s) 409
MabI ACCWGGT 1 cut(s) 142
MaeI CTAG 1 cut(s) 732
MaeII ACGT 2 cut(s) 68, 616
MaeIII GTNAC 2 cut(s) 1058, 1269
MalI GATC 7 cut(s) 138, 322, 442, 457, 520, 745, 1035
MboI GATC 7 cut(s) 136, 320, 440, 455, 518, 743, 1033
MboII GAAGA 9 cut(s) 37, 74, 310, 419, 537, 717, 815, 1244, 1269
MflI RGATCY 3 cut(s) 455, 518, 743
MhlI GDGCHC 3 cut(s) 598, 614, 719
MluCI AATT 4 cut(s) 199, 332, 1066, 1166
MmeI TCCRAC 2 cut(s) 72, 250
MnlI CCTC 9 cut(s) 165, 495, 639, 675, 825, 967, 1162, 1275, 1291
Mph1103I ATGCAT 1 cut(s) 402
MroI TCCGGA 1 cut(s) 1228
MseI TTAA 1 cut(s) 210
MspI CCGG 3 cut(s) 853, 1056, 1229
MspR9I CCNGG 2 cut(s) 144, 966
Mva1269I GAATGC 3 cut(s) 34, 735, 899
MvaI CCWGG 2 cut(s) 144, 966
MwoI GCNNNNNNNGC 5 cut(s) 233, 509, 841, 932, 1084
NcoI CCATGG 1 cut(s) 685
NdeI CATATG 1 cut(s) 601
NdeII GATC 7 cut(s) 136, 320, 440, 455, 518, 743, 1033
NlaIII CATG 8 cut(s) 400, 433, 447, 465, 643, 689, 879, 997
NlaIV GGNNCC 3 cut(s) 55, 612, 1227
NmuCI GTSAC 1 cut(s) 1269
NsiI ATGCAT 1 cut(s) 402
NspI RCATGY 4 cut(s) 433, 465, 643, 879
PaeI GCATGC 1 cut(s) 465
PceI AGGCCT 1 cut(s) 835
PctI GAATGC 3 cut(s) 34, 735, 899
PfeI GAWTC 6 cut(s) 94, 779, 929, 1002, 1091, 1235
PflMI CCANNNNNTGG 1 cut(s) 1119
PkrI GCNGC 2 cut(s) 238, 1086
Psp6I CCWGG 2 cut(s) 142, 964
PspFI CCCAGC 1 cut(s) 480
PspGI CCWGG 2 cut(s) 142, 964
PspN4I GGNNCC 3 cut(s) 55, 612, 1227
PspOMI GGGCCC 1 cut(s) 610
PspPI GGNCC 5 cut(s) 365, 610, 611, 1016, 1180
PstI CTGCAG 2 cut(s) 526, 649
PstNI CAGNNNCTG 2 cut(s) 22, 1119
PsuI RGATCY 3 cut(s) 455, 518, 743
RsaI GTAC 8 cut(s) 55, 245, 507, 555, 758, 857, 998, 1293
RsaNI GTAC 8 cut(s) 54, 244, 506, 554, 757, 856, 997, 1292
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 2 cut(s) 237, 1085
Sau3AI GATC 7 cut(s) 136, 320, 440, 455, 518, 743, 1033
Sau96I GGNCC 5 cut(s) 365, 610, 611, 1016, 1180
ScrFI CCNGG 2 cut(s) 144, 966
SduI GDGCHC 3 cut(s) 598, 614, 719
SexAI ACCWGGT 1 cut(s) 142
SfaNI GCATC 1 cut(s) 409
SfcI CTRYAG 2 cut(s) 522, 645
SinI GGWCC 2 cut(s) 1016, 1180
SmlI CTYRAG 3 cut(s) 666, 712, 958
SmoI CTYRAG 3 cut(s) 666, 712, 958
SphI GCATGC 1 cut(s) 465
Sse9I AATT 4 cut(s) 199, 332, 1066, 1166
SseBI AGGCCT 1 cut(s) 835
SsiI CCGC 6 cut(s) 76, 285, 608, 662, 933, 1100
SspMI CTAG 1 cut(s) 732
StuI AGGCCT 1 cut(s) 835
StyD4I CCNGG 2 cut(s) 142, 964
StyI CCWWGG 3 cut(s) 344, 685, 1132
TaaI ACNGT 5 cut(s) 53, 58, 248, 535, 1291
TaiI ACGT 2 cut(s) 71, 619
TaqI TCGA 2 cut(s) 139, 728
TasI AATT 4 cut(s) 199, 332, 1066, 1166
TatI WGTACW 2 cut(s) 243, 1291
TfiI GAWTC 6 cut(s) 94, 779, 929, 1002, 1091, 1235
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 2 cut(s) 253, 874
TseFI GTSAC 1 cut(s) 1269
TseI GCWGC 2 cut(s) 236, 1084
Tsp45I GTSAC 1 cut(s) 1269
TspDTI ATGAA 3 cut(s) 461, 878, 1083
TspGWI ACGGA 3 cut(s) 477, 1014, 1257
TspRI CASTG 2 cut(s) 253, 874
Van91I CCANNNNNTGG 1 cut(s) 1119
VpaK11BI GGWCC 2 cut(s) 1016, 1180
XagI CCTNNNNNAGG 1 cut(s) 546
XapI RAATTY 2 cut(s) 332, 1166
XceI RCATGY 4 cut(s) 433, 465, 643, 879
XspI CTAG 1 cut(s) 732
Zsp2I ATGCAT 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.