Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011758.1

Orthogroup ID

OG0002970

Physical Location & Seq

Genomic Coordinates Reverse (-)

18256 .. 19748

Gene Structure 1493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011758.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

atgagggtgcacgcaatctctgtgctactgatgccagacactcggcaggctctgaagcatgcctttcccaatcaatccgacggcgttgaagaggggttttggcggttgacaatcaatgagaatcaagatgggggtgttgtggctcagtctaacctataccctgatcgacctggtgaacccgactgcatatattatttgaggactgggttgtgtggttatggcagtaactgtcagtttaatcaccctaaatatgcttcacaggctgctcagtacagtggagaactccctgaaagagttggacaacccgactgcgggttattccatagtaactcctctccttttctccttgctaacgacgacctgaaacaaaacaaacccaacgagatcaaggcggttcctattgccaatggcttcttccacggagggtctggtgcccatgaccagggcttttctcacttcttattatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

155

Amino Acids

17.06

Weight (kDa)

5.72

Isoelectric Point (pI)

33.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04990 AT1G04990 AT1G04990 AT1G04990 AT1G04990 AT1G04990 AT2G32930 AT2G32930 AT2G32930
fragaria_vesca	FvH4_3g13621 FvH4_6g42010 FvH4_6g42010
malus_domestica	MD03G1135600.v1.1 MD03G1279200.v1.1 MD03G1279800.v1.1 MD05G1053000.v1.1 MD06G1100700.v1.1 MD09G1115400.v1.1 MD10G1110500.v1.1 MD17G1107000.v1.1
prunus_persica	Prupe.3G209200_v2.0.a1 Prupe.3G209200_v2.0.a1
pyrus_communis	pycom09g03970 pycom09g03980 pycom17g09960
rosa_chinensis	RchiOBHm_Chr2g0157941
rosa_laevigata	RLG00000021036
rosa_multiflora	Rmu_sc0011758.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091850
rosa_rugosa	Rorug01G0068500 Rorug02G0304500.1 Rorug02G0464400
rosa_samantha	Rh2AG529800 Rh2BG544500 Rh2CG514200 Rh2DG552800 Rh5BG160500
rosa_wichuraiana	Rw2G043860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	431
AciI	CCGC	3 cut(s)	103, 312, 392
AcuI	CTGAAG	1 cut(s)	74
AfaI	GTAC	1 cut(s)	272
AfiI	CCNNNNNNNGG	3 cut(s)	311, 312, 442
AgsI	TTSAA	1 cut(s)	89
AjnI	CCWGG	2 cut(s)	169, 441
AjuI	GAANNNNNNNTTGG	2 cut(s)	398, 430
Alw21I	GWGCWC	1 cut(s)	12
Alw44I	GTGCAC	1 cut(s)	8
AlwNI	CAGNNNCTG	2 cut(s)	52, 228
ApaLI	GTGCAC	1 cut(s)	8
ApeKI	GCWGC	1 cut(s)	263
AsuHPI	GGTGA	2 cut(s)	185, 233
BaeGI	GKGCMC	2 cut(s)	12, 436
BanI	GGYRCC	1 cut(s)	431
Bbv12I	GWGCWC	1 cut(s)	12
BbvI	GCAGC	1 cut(s)	250
BccI	CCATC	1 cut(s)	122
BceAI	ACGGC	1 cut(s)	97
BciT130I	CCWGG	2 cut(s)	171, 443
BisI	GCNGC	1 cut(s)	264
BlsI	GCNGC	1 cut(s)	265
Bme1390I	CCNGG	2 cut(s)	171, 443
BmiI	GGNNCC	2 cut(s)	396, 433
BmrFI	CCNGG	2 cut(s)	171, 443
BmrI	ACTGGG	1 cut(s)	213
BmsI	GCATC	1 cut(s)	21
BmuI	ACTGGG	1 cut(s)	213
BsaJI	CCNNGG	2 cut(s)	418, 442
Bsc4I	CCNNNNNNNGG	3 cut(s)	311, 312, 442
Bse1I	ACTGG	1 cut(s)	208
BseBI	CCWGG	2 cut(s)	171, 443
BseDI	CCNNGG	2 cut(s)	418, 442
BseLI	CCNNNNNNNGG	3 cut(s)	311, 312, 442
BseMII	CTCAG	2 cut(s)	158, 281
BseNI	ACTGG	1 cut(s)	208
BseRI	GAGGAG	1 cut(s)	322
BseSI	GKGCMC	2 cut(s)	12, 436
BseXI	GCAGC	1 cut(s)	250
BshNI	GGYRCC	1 cut(s)	431
BsiHKAI	GWGCWC	1 cut(s)	12
BslI	CCNNNNNNNGG	3 cut(s)	311, 312, 442
Bsp1286I	GDGCHC	2 cut(s)	12, 436
Bsp143I	GATC	2 cut(s)	163, 384
BspACI	CCGC	3 cut(s)	103, 312, 392
BspCNI	CTCAG	2 cut(s)	157, 280
BspLI	GGNNCC	2 cut(s)	396, 433
BspT107I	GGYRCC	1 cut(s)	431
BsrI	ACTGG	1 cut(s)	208
BssECI	CCNNGG	2 cut(s)	418, 442
BssMI	GATC	2 cut(s)	163, 384
Bst2UI	CCWGG	2 cut(s)	171, 443
Bst4CI	ACNGT	2 cut(s)	230, 275
Bst6I	CTCTTC	1 cut(s)	84
BstC8I	GCNNGC	3 cut(s)	12, 48, 60
BstDEI	CTNAG	2 cut(s)	144, 267
BstDSI	CCRYGG	1 cut(s)	418
BstKTI	GATC	2 cut(s)	166, 387
BstMBI	GATC	2 cut(s)	163, 384
BstMWI	GCNNNNNNNGC	2 cut(s)	31, 260
BstNI	CCWGG	2 cut(s)	171, 443
BstNSI	RCATGY	1 cut(s)	62
BstSCI	CCNGG	2 cut(s)	169, 441
BstSLI	GKGCMC	2 cut(s)	12, 436
BstV1I	GCAGC	1 cut(s)	250
BtgI	CCRYGG	1 cut(s)	418
BtsIMutI	CAGTG	1 cut(s)	280
Cac8I	GCNNGC	3 cut(s)	12, 48, 60
CaiI	CAGNNNCTG	2 cut(s)	52, 228
CsiI	ACCWGGT	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	271
CviAII	CATG	2 cut(s)	59, 437
CviJI	RGCY	5 cut(s)	50, 143, 263, 411, 447
CviKI_1	RGCY	5 cut(s)	50, 143, 263, 411, 447
CviQI	GTAC	1 cut(s)	271
DdeI	CTNAG	2 cut(s)	144, 267
DpnI	GATC	2 cut(s)	165, 386
DpnII	GATC	2 cut(s)	163, 384
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
Eco57I	CTGAAG	1 cut(s)	74
EcoRII	CCWGG	2 cut(s)	169, 441
FaeI	CATG	2 cut(s)	62, 440
FaiI	YATR	9 cut(s)	60, 157, 188, 190, 219, 252, 324, 438, 466
FalI	AAGNNNNNCTT	2 cut(s)	47, 79
FatI	CATG	2 cut(s)	58, 436
FauI	CCCGC	1 cut(s)	305
Fnu4HI	GCNGC	1 cut(s)	264
Fsp4HI	GCNGC	1 cut(s)	264
GluI	GCNGC	1 cut(s)	264
Hin1II	CATG	2 cut(s)	62, 440
HincII	GTYRAC	1 cut(s)	108
HindII	GTYRAC	1 cut(s)	108
HinfI	GANTC	1 cut(s)	121
HphI	GGTGA	2 cut(s)	185, 233
Hpy166II	GTNNAC	3 cut(s)	10, 108, 176
Hpy188I	TCNGA	2 cut(s)	54, 79
Hpy188III	TCNNGA	1 cut(s)	125
Hpy8I	GTNNAC	3 cut(s)	10, 108, 176
Hpy99I	CGWCG	2 cut(s)	83, 359
HpyCH4III	ACNGT	2 cut(s)	230, 275
HpyCH4V	TGCA	2 cut(s)	10, 186
HpyF10VI	GCNNNNNNNGC	2 cut(s)	31, 260
HpyF3I	CTNAG	2 cut(s)	144, 267
Hsp92II	CATG	2 cut(s)	62, 440
Kzo9I	GATC	2 cut(s)	163, 384
Lsp1109I	GCAGC	1 cut(s)	250
LweI	GCATC	1 cut(s)	21
MabI	ACCWGGT	1 cut(s)	169
MaeIII	GTNAC	2 cut(s)	224, 326
MalI	GATC	2 cut(s)	165, 386
MboI	GATC	2 cut(s)	163, 384
MboII	GAAGA	2 cut(s)	101, 406
MhlI	GDGCHC	2 cut(s)	12, 436
MmeI	TCCRAC	2 cut(s)	102, 277
MnlI	CCTC	4 cut(s)	85, 192, 343, 416
MseI	TTAA	1 cut(s)	237
MspR9I	CCNGG	2 cut(s)	171, 443
MvaI	CCWGG	2 cut(s)	171, 443
MwoI	GCNNNNNNNGC	2 cut(s)	31, 260
NdeII	GATC	2 cut(s)	163, 384
NlaIII	CATG	2 cut(s)	62, 440
NlaIV	GGNNCC	2 cut(s)	396, 433
NmeAIII	GCCGAG	1 cut(s)	22
NspI	RCATGY	1 cut(s)	62
PaeI	GCATGC	1 cut(s)	62
PfeI	GAWTC	1 cut(s)	121
PkrI	GCNGC	1 cut(s)	265
Psp6I	CCWGG	2 cut(s)	169, 441
PspGI	CCWGG	2 cut(s)	169, 441
PspN4I	GGNNCC	2 cut(s)	396, 433
PstNI	CAGNNNCTG	2 cut(s)	52, 228
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	1 cut(s)	264
Sau3AI	GATC	2 cut(s)	163, 384
ScrFI	CCNGG	2 cut(s)	171, 443
SduI	GDGCHC	2 cut(s)	12, 436
SetI	ASST	3 cut(s)	156, 172, 363
SexAI	ACCWGGT	1 cut(s)	169
SfaNI	GCATC	1 cut(s)	21
SphI	GCATGC	1 cut(s)	62
SsiI	CCGC	3 cut(s)	103, 312, 392
StyD4I	CCNGG	2 cut(s)	169, 441
TaaI	ACNGT	2 cut(s)	230, 275
TaqI	TCGA	1 cut(s)	166
TatI	WGTACW	1 cut(s)	270
TfiI	GAWTC	1 cut(s)	121
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	1 cut(s)	280
TseI	GCWGC	1 cut(s)	263
TspGWI	ACGGA	1 cut(s)	435
TspRI	CASTG	1 cut(s)	280
VneI	GTGCAC	1 cut(s)	8
XceI	RCATGY	1 cut(s)	62
XcmI	CCANNNNNNNNNTGG	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.