Rh2DG552800

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0002970
Physical Location & Seq
Reverse (-)
78199208 .. 78202975
3768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG552800.1

Sequence Viewer

Length: 1194 bp
ATGCCAGACACTCGGCAGGCTCTGAAGCATGCCGTTCCCAATCAATCCGACGGTACCGTTGAAGAGGGGTTTTGGCGGTTGACAATCAATGAGAATCAAGATGGGGGTGTTGTGGCTCAGTCTAACCTATACCCTGATCGACCTGGTGAACCCGACTGCATATATTATTTGAGGACTGGGTTGTGTGGTTATGGCAGTAACTGTCGGTTTAATCACCCTAAATATGCTTCACAGGCTGCTCAGTACAGTGGAGAACTCCCTGAAAGAGTTGGACAACCCGACTGCGGGGAAGAAAAATCATGTCCATATTACATGCGAACTGGATCATGCAAGTTTGGACCTGCATGCAAGTTTCATCATCCCCAGCCTCCGTCATTTGGAACTGCCGTACCTGCTTTTGGATCTACAGGCTCAACAGTTGTGCCTTCTTCAGGTGTACCTTACTCAGGTGGACTTTCTGCGTGGTCATTTCCAAGAGCACCATATGTAGCAGGCCCACGTTTAGCAACTCCTCAACCTTACATGCCTGCAGTTGTTCTTTCTCCGCCTCAAGGCGTTCTACCTGCCCATGGCTGGAATACCTATGTGGGAAACTTGAGCCCTGTGTCTTCGACTAGCATTCTTGGATCTAATCTTGCGTACAACTCCAGAAGTCAGGGGGAATCAGCTTCCAATGGGCAGGTTCACTTGTCATCAAGTCCAAATCTCCCCCAGAGGCCTGACCAGCCTGAGTGCCGGTACTTTATGAACACTGGAACATGCAAATATGGAGCAGAATGCAAATACCATCACCCAAAAGAAAGGATTGCAGAATCCGCTACAAACCCACTTGGGCTTCCCTCAAGACCTGGGCAACCTTTATGTACAAACTACATCATGTATGGAATCTGCAAGTATGGACCAACTTGCAGATTTGATCACCCCTTTATGGAACATTCCGGTAACTATAGTTTTGGTATGCCTATGCTGCTTGATTCGTCTCCACTAAATTATACCAGAAACTGGATAGCTCCCCAAGGATTTGAGACTTCCCCCTCTATATCATCAAAATTTCCTGATGTGGTCCAAAAACCAGAGAGCGAAAAATATCAGAACTCAGAAACAAAGGTTCCAGAAGAATCCCCTGAACGAGCTACTGGCACTTTACCTCCGTCACCATCTTCCTCCGAAACTGTACAAGACCAATCTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

397

Amino Acids

43.13

Weight (kDa)

6.37

Isoelectric Point (pI)

63.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH PF00642 48 - 74 1.9e-09 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 100 - 122 5e-10 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 241 - 266 3.4e-10 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 283 - 308 2.2e-07 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 4 cut(s) 349, 400, 571, 670
Acc65I GGTACC 1 cut(s) 53
AccB1I GGYRCC 1 cut(s) 53
AccB7I CCANNNNNTGG 1 cut(s) 1002
AciI CCGC 4 cut(s) 76, 285, 545, 816
AclWI GGATC 3 cut(s) 331, 409, 634
AcsI RAATTY 1 cut(s) 1049
AcuI CTGAAG 2 cut(s) 44, 414
AfaI GTAC 8 cut(s) 55, 245, 390, 438, 641, 740, 865, 1176
AgsI TTSAA 1 cut(s) 62
AjnI CCWGG 2 cut(s) 142, 847
AluBI AGCT 3 cut(s) 668, 1010, 1133
AluI AGCT 3 cut(s) 668, 1010, 1133
Alw21I GWGCWC 1 cut(s) 481
Alw26I GTCTC 2 cut(s) 984, 1019
AlwI GGATC 3 cut(s) 331, 409, 634
AlwNI CAGNNNCTG 3 cut(s) 22, 201, 1002
AoxI GGCC 2 cut(s) 493, 716
ApeKI GCWGC 2 cut(s) 236, 967
ApoI RAATTY 1 cut(s) 1049
Asp718I GGTACC 1 cut(s) 53
AspS9I GGNCC 4 cut(s) 338, 494, 899, 1063
AsuHPI GGTGA 5 cut(s) 158, 206, 782, 911, 1146
AvaII GGWCC 3 cut(s) 338, 899, 1063
BaeI ACNNNNGTAYC 2 cut(s) 372, 405
BanI GGYRCC 1 cut(s) 53
BanII GRGCYC 1 cut(s) 602
BbsI GAAGAC 1 cut(s) 600
Bbv12I GWGCWC 1 cut(s) 481
BbvI GCAGC 2 cut(s) 223, 954
BccI CCATC 3 cut(s) 95, 795, 1165
BceAI ACGGC 2 cut(s) 17, 371
BciT130I CCWGG 2 cut(s) 144, 849
BclI TGATCA 1 cut(s) 916
BcoDI GTCTC 2 cut(s) 984, 1019
BfaI CTAG 1 cut(s) 615
BfmI CTRYAG 3 cut(s) 405, 528, 946
BfuAI ACCTGC 4 cut(s) 349, 400, 571, 670
BisI GCNGC 2 cut(s) 237, 968
BlsI GCNGC 2 cut(s) 238, 969
Bme1390I CCNGG 2 cut(s) 144, 849
Bme18I GGWCC 3 cut(s) 338, 899, 1063
BmgT120I GGNCC 4 cut(s) 338, 494, 899, 1063
BmiI GGNNCC 2 cut(s) 55, 1110
BmrFI CCNGG 2 cut(s) 144, 849
BmrI ACTGGG 1 cut(s) 186
BmuI ACTGGG 1 cut(s) 186
BpiI GAAGAC 1 cut(s) 600
BpmI CTGGAG 1 cut(s) 631
BpuEI CTTGAG 3 cut(s) 534, 616, 826
BsaJI CCNNGG 3 cut(s) 568, 848, 1015
BsaWI WCCGGW 1 cut(s) 938
BsaXI ACNNNNNCTCC 2 cut(s) 1132, 1162
Bse118I RCCGGY 1 cut(s) 735
Bse1I ACTGG 5 cut(s) 181, 325, 757, 1007, 1141
BseBI CCWGG 2 cut(s) 144, 849
BseDI CCNNGG 3 cut(s) 568, 848, 1015
BseGI GGATG 1 cut(s) 358
BseMII CTCAG 5 cut(s) 131, 254, 459, 720, 1110
BseNI ACTGG 5 cut(s) 181, 325, 757, 1007, 1141
BseRI GAGGAG 1 cut(s) 501
BseXI GCAGC 2 cut(s) 223, 954
BseYI CCCAGC 1 cut(s) 363
BshFI GGCC 2 cut(s) 495, 718
BshNI GGYRCC 1 cut(s) 53
BsiHKAI GWGCWC 1 cut(s) 481
BsiSI CCGG 2 cut(s) 736, 939
BsmAI GTCTC 2 cut(s) 984, 1019
BsmBI CGTCTC 1 cut(s) 984
BsmI GAATGC 2 cut(s) 618, 782
BsnI GGCC 2 cut(s) 495, 718
Bsp1286I GDGCHC 2 cut(s) 481, 602
Bsp1407I TGTACA 2 cut(s) 863, 1174
Bsp143I GATC 5 cut(s) 136, 323, 401, 626, 916
Bsp19I CCATGG 1 cut(s) 568
BspACI CCGC 4 cut(s) 76, 285, 545, 816
BspANI GGCC 2 cut(s) 495, 718
BspCNI CTCAG 5 cut(s) 130, 253, 458, 721, 1109
BspLI GGNNCC 2 cut(s) 55, 1110
BspMAI CTGCAG 1 cut(s) 532
BspMI ACCTGC 4 cut(s) 349, 400, 571, 670
BspPI GGATC 3 cut(s) 331, 409, 634
BspT107I GGYRCC 1 cut(s) 53
BsrFI RCCGGY 1 cut(s) 735
BsrGI TGTACA 2 cut(s) 863, 1174
BsrI ACTGG 5 cut(s) 181, 325, 757, 1007, 1141
BssAI RCCGGY 1 cut(s) 735
BssECI CCNNGG 3 cut(s) 568, 848, 1015
BssMI GATC 5 cut(s) 136, 323, 401, 626, 916
BssT1I CCWWGG 2 cut(s) 568, 1015
Bst2UI CCWGG 2 cut(s) 144, 849
Bst4CI ACNGT 6 cut(s) 53, 58, 203, 248, 418, 1174
Bst6I CTCTTC 1 cut(s) 57
BstAUI TGTACA 2 cut(s) 863, 1174
BstC8I GCNNGC 5 cut(s) 18, 30, 346, 493, 528
BstDEI CTNAG 5 cut(s) 117, 240, 445, 729, 1096
BstDSI CCRYGG 1 cut(s) 568
BstENI CCTNNNNNAGG 2 cut(s) 429, 444
BstF5I GGATG 1 cut(s) 358
BstKTI GATC 5 cut(s) 139, 326, 404, 629, 919
BstMAI GTCTC 2 cut(s) 984, 1019
BstMBI GATC 5 cut(s) 136, 323, 401, 626, 916
BstMWI GCNNNNNNNGC 5 cut(s) 233, 392, 724, 815, 967
BstNI CCWGG 2 cut(s) 144, 849
BstNSI RCATGY 5 cut(s) 32, 316, 348, 526, 762
BstSCI CCNGG 2 cut(s) 142, 847
BstSFI CTRYAG 3 cut(s) 405, 528, 946
BstV1I GCAGC 2 cut(s) 223, 954
BstV2I GAAGAC 1 cut(s) 600
BstX2I RGATCY 2 cut(s) 401, 626
BstYI RGATCY 2 cut(s) 401, 626
BsuRI GGCC 2 cut(s) 495, 718
BtgI CCRYGG 1 cut(s) 568
BtsCI GGATG 1 cut(s) 358
BtsIMutI CAGTG 2 cut(s) 253, 750
BveI ACCTGC 4 cut(s) 349, 400, 571, 670
Cac8I GCNNGC 5 cut(s) 18, 30, 346, 493, 528
CaiI CAGNNNCTG 3 cut(s) 22, 201, 1002
Cfr10I RCCGGY 1 cut(s) 735
Cfr13I GGNCC 4 cut(s) 338, 494, 899, 1063
CsiI ACCWGGT 1 cut(s) 142
Csp6I GTAC 8 cut(s) 54, 244, 389, 437, 640, 739, 864, 1175
CviAII CATG 9 cut(s) 29, 300, 313, 327, 345, 523, 569, 759, 877
CviQI GTAC 8 cut(s) 54, 244, 389, 437, 640, 739, 864, 1175
DdeI CTNAG 5 cut(s) 117, 240, 445, 729, 1096
DpnI GATC 5 cut(s) 138, 325, 403, 628, 918
DpnII GATC 5 cut(s) 136, 323, 401, 626, 916
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
EciI GGCGGA 1 cut(s) 534
Eco130I CCWWGG 2 cut(s) 568, 1015
Eco147I AGGCCT 1 cut(s) 718
Eco24I GRGCYC 1 cut(s) 602
Eco47I GGWCC 3 cut(s) 338, 899, 1063
Eco57I CTGAAG 2 cut(s) 44, 414
EcoNI CCTNNNNNAGG 2 cut(s) 429, 444
EcoRII CCWGG 2 cut(s) 142, 847
EcoT14I CCWWGG 2 cut(s) 568, 1015
EcoT38I GRGCYC 1 cut(s) 602
ErhI CCWWGG 2 cut(s) 568, 1015
Esp3I CGTCTC 1 cut(s) 984
FaeI CATG 9 cut(s) 32, 303, 316, 330, 348, 526, 572, 762, 880
FatI CATG 9 cut(s) 28, 299, 312, 326, 344, 522, 568, 758, 876
FauI CCCGC 1 cut(s) 278
FauNDI CATATG 1 cut(s) 484
FbaI TGATCA 1 cut(s) 916
Fnu4HI GCNGC 2 cut(s) 237, 968
FokI GGATG 1 cut(s) 345
FriOI GRGCYC 1 cut(s) 602
Fsp4HI GCNGC 2 cut(s) 237, 968
FspBI CTAG 1 cut(s) 615
GluI GCNGC 2 cut(s) 237, 968
GsaI CCCAGC 1 cut(s) 367
GsuI CTGGAG 1 cut(s) 631
HaeIII GGCC 2 cut(s) 495, 718
HapII CCGG 2 cut(s) 736, 939
Hin1II CATG 9 cut(s) 32, 303, 316, 330, 348, 526, 572, 762, 880
HincII GTYRAC 1 cut(s) 81
HindII GTYRAC 1 cut(s) 81
HinfI GANTC 6 cut(s) 94, 662, 812, 885, 974, 1118
HpaII CCGG 2 cut(s) 736, 939
HphI GGTGA 5 cut(s) 158, 206, 782, 911, 1146
Hpy166II GTNNAC 5 cut(s) 81, 149, 437, 452, 685
Hpy188I TCNGA 5 cut(s) 24, 49, 1092, 1099, 1168
Hpy188III TCNNGA 5 cut(s) 98, 648, 843, 1055, 1112
Hpy8I GTNNAC 5 cut(s) 81, 149, 437, 452, 685
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 1 cut(s) 435
HpyCH4III ACNGT 6 cut(s) 53, 58, 203, 248, 418, 1174
HpyCH4IV ACGT 1 cut(s) 499
HpyF10VI GCNNNNNNNGC 5 cut(s) 233, 392, 724, 815, 967
HpyF3I CTNAG 5 cut(s) 117, 240, 445, 729, 1096
HpySE526I ACGT 1 cut(s) 499
Hsp92II CATG 9 cut(s) 32, 303, 316, 330, 348, 526, 572, 762, 880
KpnI GGTACC 1 cut(s) 57
Ksp22I TGATCA 1 cut(s) 916
Kzo9I GATC 5 cut(s) 136, 323, 401, 626, 916
LmnI GCTCC 2 cut(s) 770, 1015
Lsp1109I GCAGC 2 cut(s) 223, 954
MabI ACCWGGT 1 cut(s) 142
MaeI CTAG 1 cut(s) 615
MaeII ACGT 1 cut(s) 499
MaeIII GTNAC 3 cut(s) 197, 941, 1152
MalI GATC 5 cut(s) 138, 325, 403, 628, 918
MboI GATC 5 cut(s) 136, 323, 401, 626, 916
MboII GAAGA 6 cut(s) 74, 302, 420, 600, 1127, 1152
MflI RGATCY 2 cut(s) 401, 626
MhlI GDGCHC 2 cut(s) 481, 602
MluCI AATT 2 cut(s) 988, 1049
MmeI TCCRAC 2 cut(s) 72, 250
MseI TTAA 1 cut(s) 210
MspI CCGG 2 cut(s) 736, 939
MspR9I CCNGG 2 cut(s) 144, 849
Mva1269I GAATGC 2 cut(s) 618, 782
MvaI CCWGG 2 cut(s) 144, 849
MwoI GCNNNNNNNGC 5 cut(s) 233, 392, 724, 815, 967
NcoI CCATGG 1 cut(s) 568
NdeI CATATG 1 cut(s) 484
NdeII GATC 5 cut(s) 136, 323, 401, 626, 916
NlaIII CATG 9 cut(s) 32, 303, 316, 330, 348, 526, 572, 762, 880
NlaIV GGNNCC 2 cut(s) 55, 1110
NmuCI GTSAC 1 cut(s) 1152
NspI RCATGY 5 cut(s) 32, 316, 348, 526, 762
PaeI GCATGC 2 cut(s) 32, 348
PceI AGGCCT 1 cut(s) 718
PctI GAATGC 2 cut(s) 618, 782
PfeI GAWTC 6 cut(s) 94, 662, 812, 885, 974, 1118
PflMI CCANNNNNTGG 1 cut(s) 1002
PkrI GCNGC 2 cut(s) 238, 969
Psp6I CCWGG 2 cut(s) 142, 847
PspFI CCCAGC 1 cut(s) 363
PspGI CCWGG 2 cut(s) 142, 847
PspN4I GGNNCC 2 cut(s) 55, 1110
PspPI GGNCC 4 cut(s) 338, 494, 899, 1063
PstI CTGCAG 1 cut(s) 532
PstNI CAGNNNCTG 3 cut(s) 22, 201, 1002
PsuI RGATCY 2 cut(s) 401, 626
RsaI GTAC 8 cut(s) 55, 245, 390, 438, 641, 740, 865, 1176
RsaNI GTAC 8 cut(s) 54, 244, 389, 437, 640, 739, 864, 1175
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 2 cut(s) 237, 968
Sau3AI GATC 5 cut(s) 136, 323, 401, 626, 916
Sau96I GGNCC 4 cut(s) 338, 494, 899, 1063
ScrFI CCNGG 2 cut(s) 144, 849
SduI GDGCHC 2 cut(s) 481, 602
SexAI ACCWGGT 1 cut(s) 142
SfcI CTRYAG 3 cut(s) 405, 528, 946
SinI GGWCC 3 cut(s) 338, 899, 1063
SmlI CTYRAG 3 cut(s) 549, 595, 841
SmoI CTYRAG 3 cut(s) 549, 595, 841
SphI GCATGC 2 cut(s) 32, 348
Sse9I AATT 2 cut(s) 988, 1049
SseBI AGGCCT 1 cut(s) 718
SsiI CCGC 4 cut(s) 76, 285, 545, 816
SspMI CTAG 1 cut(s) 615
StuI AGGCCT 1 cut(s) 718
StyD4I CCNGG 2 cut(s) 142, 847
StyI CCWWGG 2 cut(s) 568, 1015
TaaI ACNGT 6 cut(s) 53, 58, 203, 248, 418, 1174
TaiI ACGT 1 cut(s) 502
TaqI TCGA 2 cut(s) 139, 611
TasI AATT 2 cut(s) 988, 1049
TatI WGTACW 3 cut(s) 243, 863, 1174
TfiI GAWTC 6 cut(s) 94, 662, 812, 885, 974, 1118
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 2 cut(s) 253, 757
TseFI GTSAC 1 cut(s) 1152
TseI GCWGC 2 cut(s) 236, 967
Tsp45I GTSAC 1 cut(s) 1152
TspDTI ATGAA 2 cut(s) 344, 761
TspGWI ACGGA 2 cut(s) 360, 1140
TspRI CASTG 2 cut(s) 253, 757
Van91I CCANNNNNTGG 1 cut(s) 1002
VpaK11BI GGWCC 3 cut(s) 338, 899, 1063
XagI CCTNNNNNAGG 2 cut(s) 429, 444
XapI RAATTY 1 cut(s) 1049
XceI RCATGY 5 cut(s) 32, 316, 348, 526, 762
XspI CTAG 1 cut(s) 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.