Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003584

Physical Location & Seq

Genomic Coordinates Reverse (-)

16804940 .. 16925163

Gene Structure 120224 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG090000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3234 bp

ATGGGCGTACCGCAAGACTCCTTGGCGGACCCTCCTAAGAGCAGCAAGAGCCAACGGTTTCGTAATGGCAAGCAAGTTCATCACATGGACATTGATAAGGAACTCCTCGCCGCCCCAATCAAATCCGCCAAGGACAAATTCGCACTCATTCCCGAGTTTCTAAAGGTGAGAGGGTTGGTAAAGCAGCATTTGGACTCGTTTAATTACTTTGTCAACACTGGAATCAAGAAAATTGTGCGTGCCAATGATCGCATAGTGTCCGGCGTCGATCCAAGCATTTGGCTCAGGTTTAATAATATCTATATTGATAAGCCCTCACTGACAACTGATGGTGTCACTACCGAAATCGCTCCCCATACATGTCGTTTATCTGATATGACGTATTCTGCTCCAATAAGAGTCGATGTAGAGTACGTTGAAGGAAGTCACGATCAAAAGAGGATAGTGACCAGGAAAGCTGTCGAAATTGCAAGAATGCCTATCATGTTACGGAGTTGCTGCTGTACCTTATATGGAAAAACGGAATCCGAACTTGCAATTCTTGGTGAGTGCCCACTTGATCCTGGAGGGTATTTTATCATCAAAGGGAATGAGAAGGTGCTTTTGATACAAGAACAGCTTTCAAAAAACAGGATTATTATTGACATGGATAAGAAGGGAAACGTAAATGCTTCTGTTACAAGCAGTTCAGAGACAATTAAAAGCAAGACTGTAATTCAGATGGAAAAACAGAAGATCTATTTGGATCTTAATCAATTTTCCAAAAAGATTCCTATTATGGTGGTCATGAAGGCTATGGGAATGACTAGTGATCAAGAAGTTGTACAGATGGTTGGAAGAGATCCTCGATATGGTGCCCTGCTCATGCCATCTATTGAGGAATGCGCAAAGGAAGGTATATATACAAAAGAGCAAGCACTGCTGTATCTCGAATCAAAGGTGAAGAGGTCCATGTTTGATCGTCCTTCATCCGATAATGACTGTAAAGTAATGGCAGTTCTTCGAGATATATTTATTGCTAATGTTCCGGTATGCCGGTCCAATTTTCGTCCAAAATGCATATATGTTGCTGTCATGTTGAGGCGCATAATGGATGCAATTTTAAACAAGGATGCGATGGATGACAAGGATTATGTTGGGAACAAGCGGCTTGAGCTATCTGGGCAATCTATTTCTCTTCTGTTTGAGGATCTGTTCAAGACAATGATCTCTGAAGTTAGGAAGACTGTAGACAATATATTAACAAAGCCTAGCAGGTCTAGTCGTTTTGACTTGGCTCAGTACATACGCAAAGATAGTATTTCACATGGCCTTGAAAGAACCCTTTCTACTGGAAACTTTGATCTCAAACGGTTCAGGATGCACAGGACAGGCATGACACAGGTGCTAGCTAGGTTATCTTTCATTGGGTCTCTAGGCCAAATGACCAGAACAAAACCGCAGTTTGAGAAGTCACGAAAAGTGAGTGGACCTAGAGCCTTGCAACCTAGCCAGTGGGGCATGCTTTGCCCTTGTGACACTCCAGAAGGTGAAGCATGTGGACTGGTAAAAAATTTAGCCCTGATGGCCCATGTAACAACTGATGAAGAGGAGGGCCCTCTAATATCTCTGTGCAAATGCTTGGGTGTGGAAGATTTGGAAACACTATCGGCAGAGGAGCTTCACTCACCCAATTCTTTTCTGGTTTTATTCAATGGAGACATCCTCGGAAAGCACAGGAAGCCACAGCGTTTTGCCACTGCAATGAGAAAGTTGCGTAGAGCTGGGAAGATTGGAGAATTTGTTAGCGTCTTTGTCAATGAGAAGCAGCATTGTGTTTACATTGCTTCTGATGGCGGTCGAGTTTGTCGGCCACTAGTTATCGCTGACAAGGGCATTTCAAGAGTCAAAGAATATCACATGCAGGAGCTGAATGCTGGGGTCCGTACTTTTAATGACTTTTTAAGTGACGGGTTGATCGAGTATCTTGATGTTAATGAGCAGAATAATGCTTTGGTGGGCTTTGATAAACTCGGAGCTGGGCAGAATGCAACTGTTGCTGTGATGAGTTATAGTGGCTATGACATAGAGGATGCAATCGTCATGAACAAGGCATCTCTGGATCGTGGTTTTGGTCGTTGTATTCTTATGAAAAAGTTTGTTGTCGCCAATCAAAATTATAACAATAACACACAAGACAGAATAATCAGGCCAAGTAAAGATGAAGTTGATTCTGGAAAGATGCAGGTTCTCGATGATGATGGTATTGCTGCACCTGGGGAAATTATTAGATCAAATGACATCTATGTAAAGAAGCAGGTCCCTATTGTCACAAGGGGGGCTATTAGATCTGGATTAAAGGATAGTGAGTATCGGTCTGCCTTTCAAAAATATAAAGGACCTGATGGGGAGTCTTGTGTGGTGGATAAAGTAGCTCTCTTTTCTGATACACATAATAATTTATGTGTTAAAGTATTGATTCGCCATACTCGTAGACCAGAGGTTGGTGACAAGTTTAGTAGCAGACATGGGCAGAAAGGTGTTTGTGGTACAATTGTCCAGCAGGAAGATTTCCCATTTTCTGAACGTGGCATTTGCCCTGATTTAATCATGAACCCTCATGGATTTCCAAGCCGAATGACTGTTGGCAAGATGATTGAGCTTCTTGGGGGTAAAGCAGGAGTTTCATGTGGTAGGTTTCATTATGGTAGTGCCTTTGGTGAACCAAGTGGTCATGCAGACAAGGTTGAGGCTATAAGTGAAACACTTGTGAGGATGGGATTTAGCTATGATGGCAAAGACTTCTTATGCTCAGGAATCACTGGTTGCCCATTGCAAGCATATATTTTCATGGGACCAATTTACTACCAGAAGTTAAAACACATGGTCCTTGATAAAATGCATGCACGTGGTAGTGGTCCCAGAGTCAGTCTAACTAGACAGCCTACTGAGGGAAAAGCTCGTAATGGAGGACTACGAGTAGGAGAAATGGAGCGTGATTGTCTGATTGCTTATGGTGCCAGTATGTTGCTGTATGAGCGCCTAATGATCTCTAGTGATCCTTTCGAAGTTCAGGTTTGCAGAGTGTGTGGTTTATTGGGTTATTACAACCACAAGATGAAAGCGGGAATTTGTTCCTCATGCAAAAATGGGGATAATATTTCTACCATGAAGCTTCCCTATGCTTGCAAGCTCTTGATCCAGGAACTCCAGTCGATGAACATTGTTCCCCGCTTAAAACTAGCTGAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0001817 GO:0001819 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006383 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009553 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032479 GO:0032481 GO:0032501 GO:0032502 GO:0032648 GO:0032728 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045088 GO:0045089 GO:0046483 GO:0048229 GO:0048518 GO:0048583 GO:0048584 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0051239 GO:0051240 GO:0055029 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080134 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

1077

Amino Acids

120.34

Weight (kDa)

8.99

Isoelectric Point (pI)

38.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb2_1	PF04563	58 - 435	1.5e-53	RNA polymerase beta subunit
RNA_pol_Rpb2_2	PF04561	209 - 385	4.2e-22	RNA polymerase Rpb2, domain 2
RNA_pol_Rpb2_3	PF04565	461 - 525	5.5e-19	RNA polymerase Rpb2, domain 3
RNA_pol_Rpb2_4	PF04566	562 - 622	2.2e-23	RNA polymerase Rpb2, domain 4
RNA_pol_Rpb2_6	PF00562	658 - 981	1.8e-113	RNA polymerase Rpb2, domain 6
RNA_pol_Rpb2_7	PF04560	983 - 1073	6.7e-31	RNA polymerase Rpb2, domain 7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45140 AT5G45140 AT5G45140
fragaria_vesca	FvH4_5g31720 FvH4_7g03930
malus_domestica	MD14G1029000.v1.1
prunus_persica	Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1
pyrus_communis	pycom14g02710
rosa_chinensis	RchiOBHm_Chr1g0327591 RchiOBHm_Chr7g0227611
rosa_laevigata	RLG00000001632 RLG00000029981
rosa_multiflora	Rmu_co8491793.1_g000001 Rmu_sc0001772.1_g000005 Rmu_ssc0000042.1_g000027
rosa_roxburghii	Rroxscaffold_3G00232000 Rroxscaffold_4G00322550
rosa_rugosa	Rorug01G0068500 Rorug07G0242400
rosa_samantha	Rh1AG085800 Rh1BG068400 Rh1CG083300 Rh1DG090000 Rh7AG395800 Rh7BG377500 Rh7CG414500 Rh7DG391600
rosa_wichuraiana	Rw1G006690 Rw7G032920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2160
Acc16I	TGCGCA	1 cut(s)	886
Acc36I	ACCTGC	3 cut(s)	1245, 2215, 2287
AccB1I	GGYRCC	2 cut(s)	854, 2996
AccB7I	CCANNNNNTGG	1 cut(s)	2483
AccI	GTMKAC	2 cut(s)	1230, 2473
AciI	CCGC	9 cut(s)	11, 26, 111, 126, 1147, 1439, 1836, 3104, 3211
AclWI	GGATC	8 cut(s)	263, 554, 753, 836, 1197, 2109, 3032, 3172
AcoI	YGGCCR	1 cut(s)	1850
AcsI	RAATTY	4 cut(s)	137, 1552, 1778, 3108
AcuI	CTGAAG	1 cut(s)	1233
AcvI	CACGTG	1 cut(s)	2888
AcyI	GRCGYC	1 cut(s)	264
AfaI	GTAC	7 cut(s)	9, 413, 505, 825, 1283, 1927, 2530
AfiI	CCNNNNNNNGG	3 cut(s)	851, 2483, 2930
AflIII	ACRYGT	1 cut(s)	359
AgsI	TTSAA	7 cut(s)	419, 624, 1198, 1316, 1693, 1881, 2366
AhlI	ACTAGT	2 cut(s)	806, 1855
AjnI	CCWGG	4 cut(s)	449, 562, 2254, 3180
AjuI	GAANNNNNNNTTGG	6 cut(s)	122, 154, 725, 757, 1976, 2008
Alw26I	GTCTC	3 cut(s)	686, 1416, 1692
AlwI	GGATC	8 cut(s)	263, 554, 753, 836, 1197, 2109, 3032, 3172
AlwNI	CAGNNNCTG	1 cut(s)	1909
Ama87I	CYCGRG	1 cut(s)	152
AoxI	GGCC	6 cut(s)	1309, 1417, 1566, 1594, 1850, 2189
ApaI	GGGCCC	1 cut(s)	1598
ApeKI	GCWGC	5 cut(s)	42, 184, 498, 1807, 2249
ApoI	RAATTY	4 cut(s)	137, 1552, 1778, 3108
Asp700I	GAANNNNTTC	2 cut(s)	1324, 3112
AspLEI	GCGC	3 cut(s)	887, 1086, 3021
AsuHPI	GGTGA	7 cut(s)	178, 557, 952, 1541, 1659, 2498, 2711
AsuII	TTCGAA	1 cut(s)	3045
AsuNHI	GCTAGC	1 cut(s)	1387
AvaI	CYCGRG	1 cut(s)	152
BaeGI	GKGCMC	3 cut(s)	554, 859, 1598
BaeI	ACNNNNGTAYC	4 cut(s)	908, 941, 2520, 2553
BanI	GGYRCC	2 cut(s)	854, 2996
BanII	GRGCYC	1 cut(s)	1598
BbrPI	CACGTG	1 cut(s)	2888
BbsI	GAAGAC	1 cut(s)	1229
BbvI	GCAGC	5 cut(s)	54, 196, 485, 1819, 2236
BciT130I	CCWGG	4 cut(s)	451, 564, 2256, 3182
BclI	TGATCA	1 cut(s)	811
BcoDI	GTCTC	3 cut(s)	686, 1416, 1692
BcuI	ACTAGT	2 cut(s)	806, 1855
BfmI	CTRYAG	1 cut(s)	1227
BfoI	RGCGCY	1 cut(s)	3022
BfuAI	ACCTGC	3 cut(s)	1245, 2215, 2287
BglI	GCCNNNNNGGC	2 cut(s)	1497, 1565
BglII	AGATCT	2 cut(s)	735, 2327
BisI	GCNGC	7 cut(s)	43, 111, 185, 499, 1148, 1808, 2250
BlsI	GCNGC	7 cut(s)	44, 112, 186, 500, 1149, 1809, 2251
Bme1390I	CCNGG	4 cut(s)	451, 564, 2256, 3182
BmeT110I	CYCGRG	1 cut(s)	152
BmiI	GGNNCC	8 cut(s)	30, 856, 1596, 1922, 2301, 2835, 2899, 2998
BmrFI	CCNGG	4 cut(s)	451, 564, 2256, 3182
BmsI	GCATC	6 cut(s)	1084, 1102, 1350, 2062, 2102, 2211
BmtI	GCTAGC	1 cut(s)	1391
BpiI	GAAGAC	1 cut(s)	1229
BplI	GAGNNNNNCTC	4 cut(s)	1649, 1681, 1689, 1721
BpmI	CTGGAG	3 cut(s)	585, 1506, 3173
Bpu10I	CCTNAGC	2 cut(s)	284, 2791
Bpu14I	TTCGAA	1 cut(s)	3045
BpuEI	CTTGAG	1 cut(s)	1172
BsaAI	YACGTR	1 cut(s)	2888
BsaBI	GATNNNNATC	1 cut(s)	750
BsaHI	GRCGYC	1 cut(s)	264
BsaI	GGTCTC	1 cut(s)	1416
BsaJI	CCNNGG	4 cut(s)	21, 129, 1705, 2255
BsaWI	WCCGGW	1 cut(s)	1027
BsaXI	ACNNNNNCTCC	2 cut(s)	1767, 1797
Bsc4I	CCNNNNNNNGG	3 cut(s)	851, 2483, 2930
Bse118I	RCCGGY	1 cut(s)	1035
Bse1I	ACTGG	7 cut(s)	223, 1336, 1492, 1548, 2806, 3000, 3190
Bse3DI	GCAATG	3 cut(s)	1749, 1821, 2810
Bse8I	GATNNNNATC	1 cut(s)	750
BseBI	CCWGG	4 cut(s)	451, 564, 2256, 3182
BseDI	CCNNGG	4 cut(s)	21, 129, 1705, 2255
BseGI	GGATG	8 cut(s)	968, 1099, 1117, 1126, 1365, 1701, 2077, 2760
BseJI	GATNNNNATC	1 cut(s)	750
BseLI	CCNNNNNNNGG	3 cut(s)	851, 2483, 2930
BseMI	GCAATG	3 cut(s)	1749, 1821, 2810
BseMII	CTCAG	4 cut(s)	298, 1292, 2805, 2919
BseNI	ACTGG	7 cut(s)	223, 1336, 1492, 1548, 2806, 3000, 3190
BseRI	GAGGAG	3 cut(s)	95, 1604, 1670
BseSI	GKGCMC	3 cut(s)	554, 859, 1598
BseXI	GCAGC	5 cut(s)	54, 196, 485, 1819, 2236
BseYI	CCCAGC	3 cut(s)	1763, 1916, 2018
BsgI	GTGCAG	1 cut(s)	2235
Bsh1285I	CGRYCG	1 cut(s)	1840
BshFI	GGCC	6 cut(s)	1311, 1419, 1568, 1596, 1852, 2191
BshNI	GGYRCC	2 cut(s)	854, 2996
BsiEI	CGRYCG	1 cut(s)	1840
BsiHKCI	CYCGRG	1 cut(s)	152
BsiSI	CCGG	3 cut(s)	261, 1028, 1036
BslFI	GGGAC	3 cut(s)	2285, 2847, 2883
BslI	CCNNNNNNNGG	3 cut(s)	851, 2483, 2930
BsmAI	GTCTC	3 cut(s)	686, 1416, 1692
BsmFI	GGGAC	3 cut(s)	2285, 2847, 2883
BsmI	GAATGC	4 cut(s)	480, 887, 1918, 2032
BsnI	GGCC	6 cut(s)	1311, 1419, 1568, 1596, 1852, 2191
Bso31I	GGTCTC	1 cut(s)	1416
BsoBI	CYCGRG	1 cut(s)	152
Bsp119I	TTCGAA	1 cut(s)	3045
Bsp120I	GGGCCC	1 cut(s)	1594
Bsp1286I	GDGCHC	3 cut(s)	554, 859, 1598
Bsp1407I	TGTACA	1 cut(s)	823
BspACI	CCGC	9 cut(s)	11, 26, 111, 126, 1147, 1439, 1836, 3104, 3211
BspANI	GGCC	6 cut(s)	1311, 1419, 1568, 1596, 1852, 2191
BspCNI	CTCAG	4 cut(s)	297, 1291, 2804, 2920
BspHI	TCATGA	3 cut(s)	786, 2082, 2589
BspLI	GGNNCC	8 cut(s)	30, 856, 1596, 1922, 2301, 2835, 2899, 2998
BspMI	ACCTGC	3 cut(s)	1245, 2215, 2287
BspOI	GCTAGC	1 cut(s)	1391
BspPI	GGATC	8 cut(s)	263, 554, 753, 836, 1197, 2109, 3032, 3172
BspT104I	TTCGAA	1 cut(s)	3045
BspT107I	GGYRCC	2 cut(s)	854, 2996
BspTNI	GGTCTC	1 cut(s)	1416
BsrDI	GCAATG	3 cut(s)	1749, 1821, 2810
BsrFI	RCCGGY	1 cut(s)	1035
BsrGI	TGTACA	1 cut(s)	823
BsrI	ACTGG	7 cut(s)	223, 1336, 1492, 1548, 2806, 3000, 3190
BssAI	RCCGGY	1 cut(s)	1035
BssECI	CCNNGG	4 cut(s)	21, 129, 1705, 2255
BssNI	GRCGYC	1 cut(s)	264
BssT1I	CCWWGG	2 cut(s)	21, 129
Bst2UI	CCWGG	4 cut(s)	451, 564, 2256, 3182
Bst4CI	ACNGT	7 cut(s)	57, 712, 983, 1228, 1353, 2035, 2623
Bst6I	CTCTTC	4 cut(s)	832, 938, 1182, 1581
BstACI	GRCGYC	1 cut(s)	264
BstAPI	GCANNNNNTGC	3 cut(s)	919, 1506, 2036
BstAUI	TGTACA	1 cut(s)	823
BstBAI	YACGTR	1 cut(s)	2888
BstBI	TTCGAA	1 cut(s)	3045
BstC8I	GCNNGC	9 cut(s)	71, 240, 915, 1389, 1502, 2817, 2883, 3166, 3170
BstDEI	CTNAG	5 cut(s)	36, 284, 1278, 2791, 2928
BstF5I	GGATG	8 cut(s)	968, 1099, 1117, 1126, 1365, 1701, 2077, 2760
BstH2I	RGCGCY	1 cut(s)	3022
BstHHI	GCGC	3 cut(s)	887, 1086, 3021
BstMAI	GTCTC	3 cut(s)	686, 1416, 1692
BstMCI	CGRYCG	1 cut(s)	1840
BstNI	CCWGG	4 cut(s)	451, 564, 2256, 3182
BstNSI	RCATGY	5 cut(s)	363, 1504, 1539, 1903, 2885
BstSCI	CCNGG	4 cut(s)	449, 562, 2254, 3180
BstSFI	CTRYAG	1 cut(s)	1227
BstSLI	GKGCMC	3 cut(s)	554, 859, 1598
BstV1I	GCAGC	5 cut(s)	54, 196, 485, 1819, 2236
BstV2I	GAAGAC	1 cut(s)	1229
BstX2I	RGATCY	5 cut(s)	735, 745, 841, 1189, 2327
BstXI	CCANNNNNNTGG	1 cut(s)	279
BstYI	RGATCY	5 cut(s)	735, 745, 841, 1189, 2327
BsuRI	GGCC	6 cut(s)	1311, 1419, 1568, 1596, 1852, 2191
BtgZI	GCGATG	1 cut(s)	1130
BtsCI	GGATG	8 cut(s)	968, 1099, 1117, 1126, 1365, 1701, 2077, 2760
BtsI	GCAGTG	2 cut(s)	917, 1737
BtsIMutI	CAGTG	6 cut(s)	216, 317, 917, 1499, 1737, 2799
BveI	ACCTGC	3 cut(s)	1245, 2215, 2287
Cac8I	GCNNGC	9 cut(s)	71, 240, 915, 1389, 1502, 2817, 2883, 3166, 3170
CaiI	CAGNNNCTG	1 cut(s)	1909
CciI	TCATGA	3 cut(s)	786, 2082, 2589
CfoI	GCGC	3 cut(s)	887, 1086, 3021
Cfr10I	RCCGGY	1 cut(s)	1035
CseI	GACGC	2 cut(s)	253, 1777
Csp6I	GTAC	7 cut(s)	8, 412, 504, 824, 1282, 1926, 2529
CviQI	GTAC	7 cut(s)	8, 412, 504, 824, 1282, 1926, 2529
DdeI	CTNAG	5 cut(s)	36, 284, 1278, 2791, 2928
DraI	TTTAAA	1 cut(s)	1104
EaeI	YGGCCR	1 cut(s)	1850
Eam1104I	CTCTTC	4 cut(s)	832, 938, 1182, 1581
EarI	CTCTTC	4 cut(s)	832, 938, 1182, 1581
EciI	GGCGGA	2 cut(s)	41, 115
Eco130I	CCWWGG	2 cut(s)	21, 129
Eco24I	GRGCYC	1 cut(s)	1598
Eco31I	GGTCTC	1 cut(s)	1416
Eco57I	CTGAAG	1 cut(s)	1233
Eco72I	CACGTG	1 cut(s)	2888
Eco88I	CYCGRG	1 cut(s)	152
EcoO109I	RGGNCCY	4 cut(s)	1594, 1595, 2299, 2378
EcoRII	CCWGG	4 cut(s)	449, 562, 2254, 3180
EcoT14I	CCWWGG	2 cut(s)	21, 129
EcoT22I	ATGCAT	2 cut(s)	1061, 2883
EcoT38I	GRGCYC	1 cut(s)	1598
ErhI	CCWWGG	2 cut(s)	21, 129
FalI	AAGNNNNNCTT	2 cut(s)	603, 635
FaqI	GGGAC	3 cut(s)	2285, 2847, 2883
FauI	CCCGC	2 cut(s)	3097, 3218
FbaI	TGATCA	1 cut(s)	811
FblI	GTMKAC	2 cut(s)	1230, 2473
Fnu4HI	GCNGC	7 cut(s)	43, 111, 185, 499, 1148, 1808, 2250
FokI	GGATG	8 cut(s)	955, 1106, 1124, 1133, 1372, 1688, 2084, 2767
FriOI	GRGCYC	1 cut(s)	1598
Fsp4HI	GCNGC	7 cut(s)	43, 111, 185, 499, 1148, 1808, 2250
FspI	TGCGCA	1 cut(s)	886
GlaI	GCGC	3 cut(s)	886, 1085, 3020
GluI	GCNGC	7 cut(s)	43, 111, 185, 499, 1148, 1808, 2250
GsaI	CCCAGC	3 cut(s)	1767, 1920, 2022
GsuI	CTGGAG	3 cut(s)	585, 1506, 3173
HaeII	RGCGCY	1 cut(s)	3022
HaeIII	GGCC	6 cut(s)	1311, 1419, 1568, 1596, 1852, 2191
HapII	CCGG	3 cut(s)	261, 1028, 1036
HgaI	GACGC	2 cut(s)	253, 1777
HhaI	GCGC	3 cut(s)	887, 1086, 3021
Hin1I	GRCGYC	1 cut(s)	264
Hin6I	GCGC	3 cut(s)	885, 1084, 3019
HinP1I	GCGC	3 cut(s)	885, 1084, 3019
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HindIII	AAGCTT	2 cut(s)	3152, 3228
HpaII	CCGG	3 cut(s)	261, 1028, 1036
HphI	GGTGA	7 cut(s)	178, 557, 952, 1541, 1659, 2498, 2711
Hpy166II	GTNNAC	7 cut(s)	214, 1231, 1469, 1541, 1819, 2474, 2702
Hpy8I	GTNNAC	7 cut(s)	214, 1231, 1469, 1541, 1819, 2474, 2702
Hpy99I	CGWCG	1 cut(s)	269
HpyAV	CCTTC	7 cut(s)	413, 589, 649, 784, 887, 975, 1520
HpyCH4III	ACNGT	7 cut(s)	57, 712, 983, 1228, 1353, 2035, 2623
HpyCH4IV	ACGT	5 cut(s)	380, 414, 663, 2566, 2887
HpyF3I	CTNAG	5 cut(s)	36, 284, 1278, 2791, 2928
HpySE526I	ACGT	5 cut(s)	380, 414, 663, 2566, 2887
Hsp92I	GRCGYC	1 cut(s)	264
HspAI	GCGC	3 cut(s)	885, 1084, 3019
Ksp22I	TGATCA	1 cut(s)	811
LmnI	GCTCC	6 cut(s)	355, 394, 1657, 1906, 2015, 2971
Lsp1109I	GCAGC	5 cut(s)	54, 196, 485, 1819, 2236
LweI	GCATC	6 cut(s)	1084, 1102, 1350, 2062, 2102, 2211
MaeII	ACGT	5 cut(s)	380, 414, 663, 2566, 2887
MfeI	CAATTG	1 cut(s)	2532
MflI	RGATCY	5 cut(s)	735, 745, 841, 1189, 2327
MhlI	GDGCHC	3 cut(s)	554, 859, 1598
MlyI	GAGTC	6 cut(s)	11, 188, 408, 1893, 2399, 2913
MmeI	TCCRAC	1 cut(s)	814
Mph1103I	ATGCAT	2 cut(s)	1061, 2883
MroXI	GAANNNNTTC	2 cut(s)	1324, 3112
MslI	CAYNNNNRTG	2 cut(s)	1742, 2886
MspI	CCGG	3 cut(s)	261, 1028, 1036
MspR9I	CCNGG	4 cut(s)	451, 564, 2256, 3182
MunI	CAATTG	1 cut(s)	2532
Mva1269I	GAATGC	4 cut(s)	480, 887, 1918, 2032
MvaI	CCWGG	4 cut(s)	451, 564, 2256, 3182
NheI	GCTAGC	1 cut(s)	1387
NlaIV	GGNNCC	8 cut(s)	30, 856, 1596, 1922, 2301, 2835, 2899, 2998
NmuCI	GTSAC	8 cut(s)	334, 425, 445, 1452, 1514, 1946, 2308, 2486
NsbI	TGCGCA	1 cut(s)	886
NsiI	ATGCAT	2 cut(s)	1061, 2883
NspI	RCATGY	5 cut(s)	363, 1504, 1539, 1903, 2885
NspV	TTCGAA	1 cut(s)	3045
PaeI	GCATGC	2 cut(s)	1504, 2885
PagI	TCATGA	3 cut(s)	786, 2082, 2589
PciI	ACATGT	1 cut(s)	359
PcsI	WCGNNNNNNNCGW	2 cut(s)	1956, 2467
PctI	GAATGC	4 cut(s)	480, 887, 1918, 2032
PdmI	GAANNNNTTC	2 cut(s)	1324, 3112
PfeI	GAWTC	7 cut(s)	222, 524, 769, 932, 2210, 2458, 2796
PflMI	CCANNNNNTGG	1 cut(s)	2483
PfoI	TCCNGGA	2 cut(s)	562, 3180
PkrI	GCNGC	7 cut(s)	44, 112, 186, 500, 1149, 1809, 2251
PleI	GAGTC	6 cut(s)	11, 188, 407, 1892, 2398, 2912
PmaCI	CACGTG	1 cut(s)	2888
PmlI	CACGTG	1 cut(s)	2888
PpsI	GAGTC	6 cut(s)	11, 188, 407, 1892, 2398, 2912
Ppu21I	YACGTR	1 cut(s)	2888
PpuMI	RGGWCCY	2 cut(s)	2299, 2378
PscI	ACATGT	1 cut(s)	359
PsiI	TTATAA	1 cut(s)	2160
Psp5II	RGGWCCY	2 cut(s)	2299, 2378
Psp6I	CCWGG	4 cut(s)	449, 562, 2254, 3180
PspCI	CACGTG	1 cut(s)	2888
PspFI	CCCAGC	3 cut(s)	1763, 1916, 2018
PspGI	CCWGG	4 cut(s)	449, 562, 2254, 3180
PspN4I	GGNNCC	8 cut(s)	30, 856, 1596, 1922, 2301, 2835, 2899, 2998
PspOMI	GGGCCC	1 cut(s)	1594
PspPPI	RGGWCCY	2 cut(s)	2299, 2378
PsrI	GAACNNNNNNTAC	4 cut(s)	981, 1013, 1312, 1344
PstNI	CAGNNNCTG	1 cut(s)	1909
PsuI	RGATCY	5 cut(s)	735, 745, 841, 1189, 2327
RsaI	GTAC	7 cut(s)	9, 413, 505, 825, 1283, 1927, 2530
RsaNI	GTAC	7 cut(s)	8, 412, 504, 824, 1282, 1926, 2529
RseI	CAYNNNNRTG	2 cut(s)	1742, 2886
SatI	GCNGC	7 cut(s)	43, 111, 185, 499, 1148, 1808, 2250
SchI	GAGTC	6 cut(s)	11, 188, 408, 1893, 2399, 2913
ScrFI	CCNGG	4 cut(s)	451, 564, 2256, 3182
SduI	GDGCHC	3 cut(s)	554, 859, 1598
SfaNI	GCATC	6 cut(s)	1084, 1102, 1350, 2062, 2102, 2211
SfcI	CTRYAG	1 cut(s)	1227
SfuI	TTCGAA	1 cut(s)	3045
SmiMI	CAYNNNNRTG	2 cut(s)	1742, 2886
SmlI	CTYRAG	1 cut(s)	1151
SmoI	CTYRAG	1 cut(s)	1151
SpeI	ACTAGT	2 cut(s)	806, 1855
SphI	GCATGC	2 cut(s)	1504, 2885
SsiI	CCGC	9 cut(s)	11, 26, 111, 126, 1147, 1439, 1836, 3104, 3211
SspI	AATATT	1 cut(s)	3139
StyD4I	CCNGG	4 cut(s)	449, 562, 2254, 3180
StyI	CCWWGG	2 cut(s)	21, 129
TaaI	ACNGT	7 cut(s)	57, 712, 983, 1228, 1353, 2035, 2623
TaiI	ACGT	5 cut(s)	383, 417, 666, 2569, 2890
TaqII	GACCGA	1 cut(s)	2343
TatI	WGTACW	2 cut(s)	823, 1281
TauI	GCSGC	2 cut(s)	113, 1150
TfiI	GAWTC	7 cut(s)	222, 524, 769, 932, 2210, 2458, 2796
TscAI	CASTG	6 cut(s)	223, 324, 924, 1499, 1744, 2806
TseFI	GTSAC	8 cut(s)	334, 425, 445, 1452, 1514, 1946, 2308, 2486
TseI	GCWGC	5 cut(s)	42, 184, 498, 1807, 2249
Tsp45I	GTSAC	8 cut(s)	334, 425, 445, 1452, 1514, 1946, 2308, 2486
TspGWI	ACGGA	3 cut(s)	505, 536, 1913
TspRI	CASTG	6 cut(s)	223, 324, 924, 1499, 1744, 2806
Van91I	CCANNNNNTGG	1 cut(s)	2483
XapI	RAATTY	4 cut(s)	137, 1552, 1778, 3108
XceI	RCATGY	5 cut(s)	363, 1504, 1539, 1903, 2885
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1678
XmiI	GTMKAC	2 cut(s)	1230, 2473
XmnI	GAANNNNTTC	2 cut(s)	1324, 3112
Zsp2I	ATGCAT	2 cut(s)	1061, 2883

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.