Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8491793.1

Orthogroup ID

OG0003584

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 2496

Gene Structure 2495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8491793.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2495 bp

atgggcgtgccggtcaagtcactgctggaccctaaccccggctccgccatcgataagcaattcctggcggcgccgatcaaatccgcaaccgacaaatttgctctgctgccggagcttctcaaggtcagaggaatcgtcagggaacatctggactccttcaactacttcgtcaacaccggaatcaagagaatcgtgcgcgccaatgaccgcattgtgtccgcagttgatcccagactttacatcaggttcctaagtgtagagattggcgaggcctccgtgaccagggacggtgtcactgataaaattgctccacacacatgtcgattatccgacatgacgtattcggctccggtgaaagtgaatgttgagtatgttgagggggcacatgatctgacaccgagacggaaagctggtgtcacgatttgcacaatgccgataatgttgaggagttgcaagtgcattttggctggaaagagcgactcggagcttgcgaagctcggggagtgtccgcttgatccgggaggctattttgtgattagagggagtgagagggtgctgttgattcaggagcagctttcgaagaacaggattattataggcaaggacaagaaggggaatgtgactgcttctgtgactagcagcaccgagaaaatgaagagcaagactgtgattgagtttgataagagtaagaagacggtttctttgctgatcaatgcgtttgagaaaaaggttccgattatggtgctgatgaaggctatggggatgcagagtgatcaggaagttgtgcagatgcttgggagagatccgcggtatggtgcattgcttttgccatctattgaggaatgtgcaaaggtggagatatacaacaaggagcaagcattggtgtacctggaaggaaagcttgcgaagaagcgtgagaaggatggtactcatggtagagttatctcagttcttgcagatgtgcttcttgctaatgttgcggtgacgcagggaaattttcgtctgaaatgcatgtatgttggtgtcatgttgagacgcatgatggattcagttttgaacaagggtgcagtggatgacacagattatgttggcaacaagcggttcgagttatctggacaattgatttctctcctgtttgaggatcagttcaagacaatgatcgagatagctaggaaagaattagacactaaaatgttaccaaaggcaaagcctgggaggggtttggccttgctctctctcatacagaaaccgcgtatatcagaaggactggaaagagccctgtctaccggaaactttgttatcgaccggttcaggatgaaaaagtcaggggtgactcaggtgctaactaggctatcctttataggagctctgggctcaatgaccaaaacaaagccgcaagttgaaaagtcggcgaaagtaagtggacctagagccttgcaacctagtcagtggggaatgctttgtccttgtgacactcccgaaggtcaagatattggactggtgaagaacttggccctgctggctcatgtcacaactgatgaagaggatggtccattgatttctctgtgctactctttgggtgttgaagacttcgaacaactatcagcagaggagcttcactcgcagaattcttttctggttctatttaatggaaacatcctcggagtgcatagaaagccacagaggtttgccactgcaatgagaaagttgcgtagagctggaaaaattgggcagtttgtaagtgtctttgtcaatgagaagcagagttgtgttcaaattgcttctgatggtggtcgagtttgccgtccgctaattattgctgacaaggggatctcaagggtgaaaggacatcacatggaggagttgaaggctggctaccggacttttgatgattttttgaatgacggtttgattgagtatcttgatgtcaatgagcagaacaatgctttgattgctctgtacgaaaatcagacaacagcagaaacaactcatatagaaatagagcctttaggcattttaggtgttattgctgggcttattccgtatcctcatcacaaccagtcacctagaaatacttaccaatgtgctatgggaaaacaagcaatggggaatattgcctataaccagctgcgtcggatggacacgcttctctacctactggtgtatcctcaaaggccattattgactaccaagacaattgagctggtggggtatgataaacttggagctgggcagaatgcaactgtggctgtgatgagttatagcggctatgacatagaggacgcaatagtgatgaacaagtcatctctggatcgtgggtttggtcgctctatatatatgaaaagattcagcgatggcatcaaaacttataaaactcgagggactgaagtcgtcaaacaagacataatagccaggccagataccgatggaaaatattataatgacaaaatgcgggtgcttgatgatgatggaattgctttacctggagagattat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0001817 GO:0001819 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006383 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009553 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032479 GO:0032481 GO:0032501 GO:0032502 GO:0032648 GO:0032728 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045088 GO:0045089 GO:0046483 GO:0048229 GO:0048518 GO:0048583 GO:0048584 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0051239 GO:0051240 GO:0055029 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080134 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

831

Amino Acids

92.18

Weight (kDa)

9.09

Isoelectric Point (pI)

34.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45140 AT5G45140 AT5G45140
fragaria_vesca	FvH4_5g31720 FvH4_7g03930
malus_domestica	MD14G1029000.v1.1
prunus_persica	Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1
pyrus_communis	pycom14g02710
rosa_chinensis	RchiOBHm_Chr1g0327591 RchiOBHm_Chr7g0227611
rosa_laevigata	RLG00000001632 RLG00000029981
rosa_multiflora	Rmu_co8491793.1_g000001 Rmu_sc0001772.1_g000005 Rmu_ssc0000042.1_g000027
rosa_roxburghii	Rroxscaffold_3G00232000 Rroxscaffold_4G00322550
rosa_rugosa	Rorug01G0068500 Rorug07G0242400
rosa_samantha	Rh1AG085800 Rh1BG068400 Rh1CG083300 Rh1DG090000 Rh7AG395800 Rh7BG377500 Rh7CG414500 Rh7DG391600
rosa_wichuraiana	Rw1G006690 Rw7G032920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	2370, 2439
AccB1I	GGYRCC	1 cut(s)	70
AccI	GTMKAC	1 cut(s)	1283
AccII	CGCG	3 cut(s)	198, 808, 1252
AclWI	GGATC	6 cut(s)	221, 509, 797, 1149, 1838, 2319
AcsI	RAATTY	3 cut(s)	95, 994, 1627
AcuI	CTGAAG	1 cut(s)	2406
AcyI	GRCGYC	1 cut(s)	71
AfaI	GTAC	3 cut(s)	887, 928, 1961
AfiI	CCNNNNNNNGG	5 cut(s)	38, 282, 812, 1138, 1217
AflIII	ACRYGT	1 cut(s)	317
AgeI	ACCGGT	1 cut(s)	1305
AgsI	TTSAA	8 cut(s)	160, 1057, 1150, 1403, 1586, 1775, 1867, 1900
AjnI	CCWGG	6 cut(s)	63, 281, 888, 1210, 2411, 2482
Alw21I	GWGCWC	1 cut(s)	1369
Alw26I	GTCTC	2 cut(s)	394, 1027
AlwI	GGATC	6 cut(s)	221, 509, 797, 1149, 1838, 2319
Ama87I	CYCGRG	2 cut(s)	497, 2376
AoxI	GGCC	5 cut(s)	270, 1224, 1512, 2174, 2414
ApeKI	GCWGC	4 cut(s)	106, 571, 639, 2128
ApoI	RAATTY	3 cut(s)	95, 994, 1627
ArsI	GACNNNNNNTTYG	2 cut(s)	685, 717
AsiGI	ACCGGT	1 cut(s)	1305
Asp700I	GAANNNNTTC	1 cut(s)	2345
AspLEI	GCGC	3 cut(s)	73, 198, 200
AspS9I	GGNCC	4 cut(s)	28, 1424, 1513, 1550
AsuC2I	CCSGG	2 cut(s)	39, 519
AsuHPI	GGTGA	6 cut(s)	364, 994, 1342, 1513, 1852, 2055
AsuII	TTCGAA	2 cut(s)	578, 1593
AvaI	CYCGRG	2 cut(s)	497, 2376
AvaII	GGWCC	3 cut(s)	28, 1424, 1550
BaeGI	GKGCMC	1 cut(s)	385
BaeI	ACNNNNGTAYC	2 cut(s)	2147, 2180
BanI	GGYRCC	1 cut(s)	70
BanII	GRGCYC	3 cut(s)	1279, 1369, 1376
BarI	GAAGNNNNNNTAC	2 cut(s)	1859, 1891
BbsI	GAAGAC	2 cut(s)	698, 1593
Bbv12I	GWGCWC	1 cut(s)	1369
BbvI	GCAGC	4 cut(s)	93, 583, 651, 2115
BceAI	ACGGC	1 cut(s)	1788
BcgI	CGANNNNNNTGC	4 cut(s)	80, 114, 724, 758
BciT130I	CCWGG	6 cut(s)	65, 283, 890, 1212, 2413, 2484
BciVI	GTATCC	2 cut(s)	2055, 2175
BclI	TGATCA	2 cut(s)	708, 772
BcnI	CCSGG	2 cut(s)	39, 519
BcoDI	GTCTC	2 cut(s)	394, 1027
BfaI	CTAG	6 cut(s)	636, 1170, 1347, 1428, 1443, 2067
BfoI	RGCGCY	1 cut(s)	74
BfuI	GTATCC	2 cut(s)	2055, 2175
BglI	GCCNNNNNGGC	1 cut(s)	1520
BisI	GCNGC	7 cut(s)	69, 107, 572, 640, 1394, 2129, 2266
BlsI	GCNGC	7 cut(s)	70, 108, 573, 641, 1395, 2130, 2267
Bme1390I	CCNGG	8 cut(s)	39, 65, 283, 519, 890, 1212, 2413, 2484
Bme18I	GGWCC	3 cut(s)	28, 1424, 1550
BmeT110I	CYCGRG	2 cut(s)	497, 2376
BmgT120I	GGNCC	4 cut(s)	28, 1424, 1513, 1550
BmiI	GGNNCC	6 cut(s)	30, 43, 72, 248, 348, 732
BmrFI	CCNGG	8 cut(s)	39, 65, 283, 519, 890, 1212, 2413, 2484
BmsI	GCATC	3 cut(s)	753, 780, 2367
BoxI	GACNNNNGTC	1 cut(s)	2387
BpiI	GAAGAC	2 cut(s)	698, 1593
BplI	GAGNNNNNCTC	2 cut(s)	1604, 1636
Bpu14I	TTCGAA	2 cut(s)	578, 1593
BpuEI	CTTGAG	2 cut(s)	104, 1819
BpuMI	CCSGG	2 cut(s)	39, 519
Bsa29I	ATCGAT	1 cut(s)	51
BsaHI	GRCGYC	1 cut(s)	71
BsaJI	CCNNGG	5 cut(s)	37, 282, 806, 1211, 1660
BsaWI	WCCGGW	5 cut(s)	176, 349, 1286, 1305, 1878
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 56
Bsc4I	CCNNNNNNNGG	5 cut(s)	38, 282, 812, 1138, 1217
Bse118I	RCCGGY	2 cut(s)	10, 1305
Bse1I	ACTGG	4 cut(s)	1272, 1503, 2059, 2163
Bse3DI	GCAATG	3 cut(s)	818, 1704, 2109
BseBI	CCWGG	6 cut(s)	65, 283, 890, 1212, 2413, 2484
BseCI	ATCGAT	1 cut(s)	51
BseDI	CCNNGG	5 cut(s)	37, 282, 806, 1211, 1660
BseGI	GGATG	7 cut(s)	768, 928, 1078, 1320, 1552, 1656, 2142
BseLI	CCNNNNNNNGG	5 cut(s)	38, 282, 812, 1138, 1217
BseMI	GCAATG	3 cut(s)	818, 1704, 2109
BseMII	CTCAG	2 cut(s)	960, 1349
BseNI	ACTGG	4 cut(s)	1272, 1503, 2059, 2163
BsePI	GCGCGC	1 cut(s)	196
BseRI	GAGGAG	3 cut(s)	460, 1625, 1874
BseSI	GKGCMC	1 cut(s)	385
BseXI	GCAGC	4 cut(s)	93, 583, 651, 2115
BseYI	CCCAGC	2 cut(s)	2030, 2228
BsgI	GTGCAG	2 cut(s)	806, 1086
Bsh1236I	CGCG	3 cut(s)	198, 808, 1252
Bsh1285I	CGRYCG	1 cut(s)	1306
BshFI	GGCC	5 cut(s)	272, 1226, 1514, 2176, 2416
BshNI	GGYRCC	1 cut(s)	70
BshTI	ACCGGT	1 cut(s)	1305
BshVI	ATCGAT	1 cut(s)	51
BsiEI	CGRYCG	1 cut(s)	1306
BsiHKAI	GWGCWC	1 cut(s)	1369
BsiHKCI	CYCGRG	2 cut(s)	497, 2376
BsiSI	CCGG	9 cut(s)	11, 39, 110, 177, 350, 518, 1287, 1306, 1879
BslFI	GGGAC	2 cut(s)	299, 2395
BslI	CCNNNNNNNGG	5 cut(s)	38, 282, 812, 1138, 1217
BsmAI	GTCTC	2 cut(s)	394, 1027
BsmBI	CGTCTC	2 cut(s)	394, 1027
BsmFI	GGGAC	2 cut(s)	299, 2395
BsmI	GAATGC	2 cut(s)	1461, 2242
BsnI	GGCC	5 cut(s)	272, 1226, 1514, 2176, 2416
BsoBI	CYCGRG	2 cut(s)	497, 2376
Bsp119I	TTCGAA	2 cut(s)	578, 1593
Bsp1286I	GDGCHC	4 cut(s)	385, 1279, 1369, 1376
BspANI	GGCC	5 cut(s)	272, 1226, 1514, 2176, 2416
BspCNI	CTCAG	2 cut(s)	959, 1348
BspDI	ATCGAT	1 cut(s)	51
BspFNI	CGCG	3 cut(s)	198, 808, 1252
BspLI	GGNNCC	6 cut(s)	30, 43, 72, 248, 348, 732
BspPI	GGATC	6 cut(s)	221, 509, 797, 1149, 1838, 2319
BspQI	GCTCTTC	1 cut(s)	650
BspT104I	TTCGAA	2 cut(s)	578, 1593
BspT107I	GGYRCC	1 cut(s)	70
BsrDI	GCAATG	3 cut(s)	818, 1704, 2109
BsrFI	RCCGGY	2 cut(s)	10, 1305
BsrI	ACTGG	4 cut(s)	1272, 1503, 2059, 2163
BssAI	RCCGGY	2 cut(s)	10, 1305
BssECI	CCNNGG	5 cut(s)	37, 282, 806, 1211, 1660
BssHII	GCGCGC	1 cut(s)	196
BssNI	GRCGYC	1 cut(s)	71
Bst2UI	CCWGG	6 cut(s)	65, 283, 890, 1212, 2413, 2484
Bst4CI	ACNGT	5 cut(s)	290, 667, 697, 1907, 2245
Bst6I	CTCTTC	2 cut(s)	650, 1536
BstACI	GRCGYC	1 cut(s)	71
BstBI	TTCGAA	2 cut(s)	578, 1593
BstC8I	GCNNGC	7 cut(s)	8, 198, 489, 876, 903, 1521, 1873
BstDEI	CTNAG	3 cut(s)	251, 946, 1335
BstDSI	CCRYGG	1 cut(s)	806
BstENI	CCTNNNNNAGG	1 cut(s)	1136
BstF5I	GGATG	7 cut(s)	768, 928, 1078, 1320, 1552, 1656, 2142
BstFNI	CGCG	3 cut(s)	198, 808, 1252
BstH2I	RGCGCY	1 cut(s)	74
BstHHI	GCGC	3 cut(s)	73, 198, 200
BstMAI	GTCTC	2 cut(s)	394, 1027
BstMCI	CGRYCG	1 cut(s)	1306
BstMWI	GCNNNNNNNGC	9 cut(s)	112, 493, 977, 1348, 1520, 1621, 1675, 1952, 2246
BstNI	CCWGG	6 cut(s)	65, 283, 890, 1212, 2413, 2484
BstNSI	RCATGY	2 cut(s)	321, 1015
BstPAI	GACNNNNGTC	1 cut(s)	2387
BstSCI	CCNGG	8 cut(s)	37, 63, 281, 517, 888, 1210, 2411, 2482
BstSLI	GKGCMC	1 cut(s)	385
BstUI	CGCG	3 cut(s)	198, 808, 1252
BstV1I	GCAGC	4 cut(s)	93, 583, 651, 2115
BstV2I	GAAGAC	2 cut(s)	698, 1593
BstX2I	RGATCY	2 cut(s)	802, 1830
BstYI	RGATCY	2 cut(s)	802, 1830
Bsu15I	ATCGAT	1 cut(s)	51
BsuI	GTATCC	2 cut(s)	2055, 2175
BsuRI	GGCC	5 cut(s)	272, 1226, 1514, 2176, 2416
BsuTUI	ATCGAT	1 cut(s)	51
BtgI	CCRYGG	1 cut(s)	806
BtgZI	GCGATG	1 cut(s)	2367
BtsCI	GGATG	7 cut(s)	768, 928, 1078, 1320, 1552, 1656, 2142
BtsI	GCAGTG	3 cut(s)	20, 1074, 1692
BtsIMutI	CAGTG	5 cut(s)	20, 294, 1074, 1454, 1692
Cac8I	GCNNGC	7 cut(s)	8, 198, 489, 876, 903, 1521, 1873
CfoI	GCGC	3 cut(s)	73, 198, 200
Cfr10I	RCCGGY	2 cut(s)	10, 1305
Cfr13I	GGNCC	4 cut(s)	28, 1424, 1513, 1550
Cfr42I	CCGCGG	1 cut(s)	809
ClaI	ATCGAT	1 cut(s)	51
CseI	GACGC	4 cut(s)	994, 1044, 2120, 2291
Csp6I	GTAC	3 cut(s)	886, 927, 1960
CspAI	ACCGGT	1 cut(s)	1305
CviAII	CATG	9 cut(s)	318, 334, 386, 932, 1012, 1027, 1039, 1526, 1855
CviQI	GTAC	3 cut(s)	886, 927, 1960
DdeI	CTNAG	3 cut(s)	251, 946, 1335
DinI	GGCGCC	1 cut(s)	72
Eam1104I	CTCTTC	2 cut(s)	650, 1536
EarI	CTCTTC	2 cut(s)	650, 1536
EciI	GGCGGA	1 cut(s)	34
Ecl136II	GAGCTC	1 cut(s)	1367
Eco147I	AGGCCT	1 cut(s)	272
Eco24I	GRGCYC	3 cut(s)	1279, 1369, 1376
Eco47I	GGWCC	3 cut(s)	28, 1424, 1550
Eco53kI	GAGCTC	1 cut(s)	1367
Eco57I	CTGAAG	1 cut(s)	2406
Eco88I	CYCGRG	2 cut(s)	497, 2376
EcoICRI	GAGCTC	1 cut(s)	1367
EcoNI	CCTNNNNNAGG	1 cut(s)	1136
EcoRI	GAATTC	1 cut(s)	1627
EcoRII	CCWGG	6 cut(s)	63, 281, 888, 1210, 2411, 2482
EcoT22I	ATGCAT	1 cut(s)	1013
EcoT38I	GRGCYC	3 cut(s)	1279, 1369, 1376
EgeI	GGCGCC	1 cut(s)	72
EheI	GGCGCC	1 cut(s)	72
Esp3I	CGTCTC	2 cut(s)	394, 1027
FaeI	CATG	9 cut(s)	321, 337, 389, 935, 1015, 1030, 1042, 1529, 1858
FalI	AAGNNNNNCTT	2 cut(s)	885, 917
FaqI	GGGAC	2 cut(s)	299, 2395
FatI	CATG	9 cut(s)	317, 333, 385, 931, 1011, 1026, 1038, 1525, 1854
FauI	CCCGC	1 cut(s)	2445
FbaI	TGATCA	2 cut(s)	708, 772
FblI	GTMKAC	1 cut(s)	1283
Fnu4HI	GCNGC	7 cut(s)	69, 107, 572, 640, 1394, 2129, 2266
FokI	GGATG	7 cut(s)	775, 935, 1085, 1327, 1559, 1643, 2149
FriOI	GRGCYC	3 cut(s)	1279, 1369, 1376
Fsp4HI	GCNGC	7 cut(s)	69, 107, 572, 640, 1394, 2129, 2266
FspBI	CTAG	6 cut(s)	636, 1170, 1347, 1428, 1443, 2067
GlaI	GCGC	3 cut(s)	72, 197, 199
GluI	GCNGC	7 cut(s)	69, 107, 572, 640, 1394, 2129, 2266
GsaI	CCCAGC	2 cut(s)	2034, 2232
HaeII	RGCGCY	1 cut(s)	74
HaeIII	GGCC	5 cut(s)	272, 1226, 1514, 2176, 2416
HapII	CCGG	9 cut(s)	11, 39, 110, 177, 350, 518, 1287, 1306, 1879
HgaI	GACGC	4 cut(s)	994, 1044, 2120, 2291
HhaI	GCGC	3 cut(s)	73, 198, 200
Hin1I	GRCGYC	1 cut(s)	71
Hin1II	CATG	9 cut(s)	321, 337, 389, 935, 1015, 1030, 1042, 1529, 1858
Hin6I	GCGC	3 cut(s)	71, 196, 198
HinP1I	GCGC	3 cut(s)	71, 196, 198
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HindIII	AAGCTT	1 cut(s)	899
HinfI	GANTC	9 cut(s)	132, 152, 180, 189, 479, 562, 1046, 1333, 2346
HpaII	CCGG	9 cut(s)	11, 39, 110, 177, 350, 518, 1287, 1306, 1879
HphI	GGTGA	6 cut(s)	364, 994, 1342, 1513, 1852, 2055
Hpy166II	GTNNAC	4 cut(s)	172, 886, 1284, 1424
Hpy8I	GTNNAC	4 cut(s)	172, 886, 1284, 1424
Hpy99I	CGWCG	1 cut(s)	2136
HpyAV	CCTTC	8 cut(s)	166, 604, 745, 887, 913, 1256, 1475, 1861
HpyCH4III	ACNGT	5 cut(s)	290, 667, 697, 1907, 2245
HpyCH4IV	ACGT	1 cut(s)	338
HpyF10VI	GCNNNNNNNGC	9 cut(s)	112, 493, 977, 1348, 1520, 1621, 1675, 1952, 2246
HpyF3I	CTNAG	3 cut(s)	251, 946, 1335
HpySE526I	ACGT	1 cut(s)	338
Hsp92I	GRCGYC	1 cut(s)	71
Hsp92II	CATG	9 cut(s)	321, 337, 389, 935, 1015, 1030, 1042, 1529, 1858
HspAI	GCGC	3 cut(s)	71, 196, 198
KasI	GGCGCC	1 cut(s)	70
Ksp22I	TGATCA	2 cut(s)	708, 772
KspI	CCGCGG	1 cut(s)	809
LguI	GCTCTTC	1 cut(s)	650
Lsp1109I	GCAGC	4 cut(s)	93, 583, 651, 2115
LweI	GCATC	3 cut(s)	753, 780, 2367
MaeI	CTAG	6 cut(s)	636, 1170, 1347, 1428, 1443, 2067
MaeII	ACGT	1 cut(s)	338
MboII	GAAGA	7 cut(s)	592, 667, 703, 919, 1516, 1553, 1598
MfeI	CAATTG	2 cut(s)	1118, 2196
MflI	RGATCY	2 cut(s)	802, 1830
MhlI	GDGCHC	4 cut(s)	385, 1279, 1369, 1376
Mly113I	GGCGCC	1 cut(s)	71
MlyI	GAGTC	3 cut(s)	146, 473, 1327
MmeI	TCCRAC	2 cut(s)	354, 2114
Mph1103I	ATGCAT	1 cut(s)	1013
MroXI	GAANNNNTTC	1 cut(s)	2345
MseI	TTAA	1 cut(s)	1647
MslI	CAYNNNNRTG	3 cut(s)	316, 1190, 1697
MspA1I	CMGCKG	2 cut(s)	808, 2128
MspI	CCGG	9 cut(s)	11, 39, 110, 177, 350, 518, 1287, 1306, 1879
MspR9I	CCNGG	8 cut(s)	39, 65, 283, 519, 890, 1212, 2413, 2484
MunI	CAATTG	2 cut(s)	1118, 2196
Mva1269I	GAATGC	2 cut(s)	1461, 2242
MvaI	CCWGG	6 cut(s)	65, 283, 890, 1212, 2413, 2484
MvnI	CGCG	3 cut(s)	198, 808, 1252
MwoI	GCNNNNNNNGC	9 cut(s)	112, 493, 977, 1348, 1520, 1621, 1675, 1952, 2246
NarI	GGCGCC	1 cut(s)	71
NciI	CCSGG	2 cut(s)	39, 519
NlaIII	CATG	9 cut(s)	321, 337, 389, 935, 1015, 1030, 1042, 1529, 1858
NlaIV	GGNNCC	6 cut(s)	30, 43, 72, 248, 348, 732
NsiI	ATGCAT	1 cut(s)	1013
NspI	RCATGY	2 cut(s)	321, 1015
NspV	TTCGAA	2 cut(s)	578, 1593
PaeR7I	CTCGAG	1 cut(s)	2376
PauI	GCGCGC	1 cut(s)	196
PceI	AGGCCT	1 cut(s)	272
PciI	ACATGT	1 cut(s)	317
PciSI	GCTCTTC	1 cut(s)	650
PcsI	WCGNNNNNNNCGW	2 cut(s)	488, 1801
PctI	GAATGC	2 cut(s)	1461, 2242
PdmI	GAANNNNTTC	1 cut(s)	2345
PfeI	GAWTC	6 cut(s)	132, 180, 189, 562, 1046, 2346
PflFI	GACNNNGTC	1 cut(s)	290
PfoI	TCCNGGA	1 cut(s)	517
PinAI	ACCGGT	1 cut(s)	1305
PkrI	GCNGC	7 cut(s)	70, 108, 573, 641, 1395, 2130, 2267
PleI	GAGTC	3 cut(s)	146, 473, 1327
PluTI	GGCGCC	1 cut(s)	74
PpsI	GAGTC	3 cut(s)	146, 473, 1327
PscI	ACATGT	1 cut(s)	317
PshAI	GACNNNNGTC	1 cut(s)	2387
PsiI	TTATAA	2 cut(s)	2370, 2439
Psp124BI	GAGCTC	1 cut(s)	1369
Psp6I	CCWGG	6 cut(s)	63, 281, 888, 1210, 2411, 2482
PspFI	CCCAGC	2 cut(s)	2030, 2228
PspGI	CCWGG	6 cut(s)	63, 281, 888, 1210, 2411, 2482
PspN4I	GGNNCC	6 cut(s)	30, 43, 72, 248, 348, 732
PspPI	GGNCC	4 cut(s)	28, 1424, 1513, 1550
PspXI	VCTCGAGB	1 cut(s)	2376
PsuI	RGATCY	2 cut(s)	802, 1830
PsyI	GACNNNGTC	1 cut(s)	290
PteI	GCGCGC	1 cut(s)	196
PvuII	CAGCTG	1 cut(s)	2128
RsaI	GTAC	3 cut(s)	887, 928, 1961
RsaNI	GTAC	3 cut(s)	886, 927, 1960
RseI	CAYNNNNRTG	3 cut(s)	316, 1190, 1697
SacI	GAGCTC	1 cut(s)	1369
SacII	CCGCGG	1 cut(s)	809
SapI	GCTCTTC	1 cut(s)	650
SaqAI	TTAA	1 cut(s)	1647
SatI	GCNGC	7 cut(s)	69, 107, 572, 640, 1394, 2129, 2266
Sau96I	GGNCC	4 cut(s)	28, 1424, 1513, 1550
SchI	GAGTC	3 cut(s)	146, 473, 1327
ScrFI	CCNGG	8 cut(s)	39, 65, 283, 519, 890, 1212, 2413, 2484
SduI	GDGCHC	4 cut(s)	385, 1279, 1369, 1376
SfaNI	GCATC	3 cut(s)	753, 780, 2367
SfoI	GGCGCC	1 cut(s)	72
Sfr274I	CTCGAG	1 cut(s)	2376
Sfr303I	CCGCGG	1 cut(s)	809
SfuI	TTCGAA	2 cut(s)	578, 1593
SgrBI	CCGCGG	1 cut(s)	809
SinI	GGWCC	3 cut(s)	28, 1424, 1550
SlaI	CTCGAG	1 cut(s)	2376
SmiMI	CAYNNNNRTG	3 cut(s)	316, 1190, 1697
SmlI	CTYRAG	3 cut(s)	119, 1834, 2376
SmoI	CTYRAG	3 cut(s)	119, 1834, 2376
SseBI	AGGCCT	1 cut(s)	272
SspDI	GGCGCC	1 cut(s)	70
SspI	AATATT	2 cut(s)	2113, 2435
SspMI	CTAG	6 cut(s)	636, 1170, 1347, 1428, 1443, 2067
SstI	GAGCTC	1 cut(s)	1369
StuI	AGGCCT	1 cut(s)	272
StyD4I	CCNGG	8 cut(s)	37, 63, 281, 517, 888, 1210, 2411, 2482
TaaI	ACNGT	5 cut(s)	290, 667, 697, 1907, 2245
TaiI	ACGT	1 cut(s)	341
TaqI	TCGA	9 cut(s)	51, 322, 578, 1104, 1161, 1302, 1593, 1795, 2377
TauI	GCSGC	3 cut(s)	71, 1396, 2268
TfiI	GAWTC	6 cut(s)	132, 180, 189, 562, 1046, 2346
Tru1I	TTAA	1 cut(s)	1647
Tru9I	TTAA	1 cut(s)	1647
TscAI	CASTG	5 cut(s)	27, 301, 1074, 1454, 1699
TseI	GCWGC	4 cut(s)	106, 571, 639, 2128
TspDTI	ATGAA	6 cut(s)	668, 764, 1331, 1554, 2309, 2354
TspGWI	ACGGA	3 cut(s)	265, 418, 2031
TspRI	CASTG	5 cut(s)	27, 301, 1074, 1454, 1699
Tth111I	GACNNNGTC	1 cut(s)	290
VpaK11BI	GGWCC	3 cut(s)	28, 1424, 1550
XagI	CCTNNNNNAGG	1 cut(s)	1136
XapI	RAATTY	3 cut(s)	95, 994, 1627
XceI	RCATGY	2 cut(s)	321, 1015
XhoI	CTCGAG	1 cut(s)	2376
XmiI	GTMKAC	1 cut(s)	1283
XmnI	GAANNNNTTC	1 cut(s)	2345
XspI	CTAG	6 cut(s)	636, 1170, 1347, 1428, 1443, 2067
Zsp2I	ATGCAT	1 cut(s)	1013

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.