DNA-directed RNA polymerase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G45140 AT5G45140 AT5G45140 |
| fragaria_vesca | FvH4_5g31720 FvH4_7g03930 |
| malus_domestica | MD14G1029000.v1.1 |
| prunus_persica | Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1 |
| pyrus_communis | pycom14g02710 |
| rosa_chinensis | RchiOBHm_Chr1g0327591 RchiOBHm_Chr7g0227611 |
| rosa_laevigata | RLG00000001632 RLG00000029981 |
| rosa_multiflora | Rmu_co8491793.1_g000001 Rmu_sc0001772.1_g000005 Rmu_ssc0000042.1_g000027 |
| rosa_roxburghii | Rroxscaffold_3G00232000 Rroxscaffold_4G00322550 |
| rosa_rugosa | Rorug01G0068500 Rorug07G0242400 |
| rosa_samantha | Rh1AG085800 Rh1BG068400 Rh1CG083300 Rh1DG090000 Rh7AG395800 Rh7BG377500 Rh7CG414500 Rh7DG391600 |
| rosa_wichuraiana | Rw1G006690 Rw7G032920 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 2333 |
| Acc16I | TGCGCA | 2 cut(s) | 1757, 2398 |
| Acc36I | ACCTGC | 2 cut(s) | 1245, 2919 |
| AccB1I | GGYRCC | 1 cut(s) | 2783 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 2182, 2738 |
| AccBSI | CCGCTC | 1 cut(s) | 113 |
| AccI | GTMKAC | 2 cut(s) | 898, 1230 |
| AclWI | GGATC | 5 cut(s) | 263, 836, 1197, 2364, 3287 |
| AcoI | YGGCCR | 4 cut(s) | 24, 87, 1162, 2219 |
| AcsI | RAATTY | 6 cut(s) | 75, 101, 137, 661, 2705, 3363 |
| AcuI | CTGAAG | 1 cut(s) | 1233 |
| AcyI | GRCGYC | 1 cut(s) | 264 |
| AfaI | GTAC | 4 cut(s) | 413, 825, 1644, 2123 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 249, 513, 2182, 2738, 3006, 3070, 3185 |
| AflII | CTTAAG | 1 cut(s) | 161 |
| AjnI | CCWGG | 3 cut(s) | 562, 2509, 2959 |
| Alw26I | GTCTC | 1 cut(s) | 2112 |
| AlwI | GGATC | 5 cut(s) | 263, 836, 1197, 2364, 3287 |
| Ama87I | CYCGRG | 1 cut(s) | 3156 |
| ApeKI | GCWGC | 5 cut(s) | 684, 854, 1736, 1739, 2504 |
| ApoI | RAATTY | 6 cut(s) | 75, 101, 137, 661, 2705, 3363 |
| AseI | ATTAAT | 1 cut(s) | 1169 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 947, 3367 |
| AspA2I | CCTAGG | 1 cut(s) | 1472 |
| AspLEI | GCGC | 2 cut(s) | 1758, 2399 |
| AspS9I | GGNCC | 9 cut(s) | 1469, 1558, 2445, 2471, 2554, 2633, 3089, 3121, 3152 |
| AsuHPI | GGTGA | 8 cut(s) | 178, 320, 557, 952, 1541, 2087, 2753, 2966 |
| AvaI | CYCGRG | 1 cut(s) | 3156 |
| AvaII | GGWCC | 6 cut(s) | 1469, 2471, 2554, 3089, 3121, 3152 |
| AvrII | CCTAGG | 1 cut(s) | 1472 |
| BaeGI | GKGCMC | 1 cut(s) | 554 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3034, 3067 |
| BalI | TGGCCA | 1 cut(s) | 1164 |
| BanI | GGYRCC | 1 cut(s) | 2783 |
| BanII | GRGCYC | 2 cut(s) | 315, 1598 |
| BauI | CACGAG | 2 cut(s) | 3141, 3373 |
| BbsI | GAAGAC | 2 cut(s) | 1457, 2331 |
| BbvCI | CCTCAGC | 1 cut(s) | 3480 |
| BbvI | GCAGC | 5 cut(s) | 696, 841, 1723, 1726, 2491 |
| BceAI | ACGGC | 2 cut(s) | 1248, 2234 |
| BciT130I | CCWGG | 3 cut(s) | 564, 2511, 2961 |
| BciVI | GTATCC | 2 cut(s) | 563, 2220 |
| BclI | TGATCA | 2 cut(s) | 430, 811 |
| BcoDI | GTCTC | 1 cut(s) | 2112 |
| BfmI | CTRYAG | 2 cut(s) | 1227, 2877 |
| BfrI | CTTAAG | 1 cut(s) | 161 |
| BfuAI | ACCTGC | 2 cut(s) | 1245, 2919 |
| BfuI | GTATCC | 2 cut(s) | 563, 2220 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1497 |
| BglII | AGATCT | 1 cut(s) | 735 |
| BisI | GCNGC | 8 cut(s) | 111, 364, 685, 855, 1439, 1737, 1740, 2505 |
| BlnI | CCTAGG | 1 cut(s) | 1472 |
| BlsI | GCNGC | 8 cut(s) | 112, 365, 686, 856, 1440, 1738, 1741, 2506 |
| BmcAI | AGTACT | 1 cut(s) | 1644 |
| Bme1390I | CCNGG | 3 cut(s) | 564, 2511, 2961 |
| Bme18I | GGWCC | 6 cut(s) | 1469, 2471, 2554, 3089, 3121, 3152 |
| BmeT110I | CYCGRG | 1 cut(s) | 3156 |
| BmgT120I | GGNCC | 9 cut(s) | 1469, 1558, 2445, 2471, 2554, 2633, 3089, 3121, 3152 |
| BmiI | GGNNCC | 4 cut(s) | 2556, 2785, 3090, 3154 |
| BmrFI | CCNGG | 3 cut(s) | 564, 2511, 2961 |
| BmsI | GCATC | 6 cut(s) | 465, 680, 735, 1084, 1102, 2357 |
| BpiI | GAAGAC | 2 cut(s) | 1457, 2331 |
| BpmI | CTGGAG | 4 cut(s) | 585, 1506, 1925, 1938 |
| Bpu10I | CCTNAGC | 1 cut(s) | 3480 |
| BpuEI | CTTGAG | 1 cut(s) | 2622 |
| BsaAI | YACGTR | 1 cut(s) | 2121 |
| BsaHI | GRCGYC | 1 cut(s) | 264 |
| BsaJI | CCNNGG | 8 cut(s) | 21, 129, 562, 1306, 1472, 1705, 2510, 3464 |
| BsaWI | WCCGGW | 1 cut(s) | 1331 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1583, 1613 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 249, 513, 2182, 2738, 3006, 3070, 3185 |
| Bse1I | ACTGG | 4 cut(s) | 1492, 2104, 2125, 3364 |
| Bse3DI | GCAATG | 6 cut(s) | 1122, 1749, 1821, 2139, 2154, 2189 |
| BseBI | CCWGG | 3 cut(s) | 564, 2511, 2961 |
| BseDI | CCNNGG | 8 cut(s) | 21, 129, 562, 1306, 1472, 1705, 2510, 3464 |
| BseGI | GGATG | 8 cut(s) | 334, 480, 1099, 1117, 1126, 1701, 2494, 3015 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 249, 513, 2182, 2738, 3006, 3070, 3185 |
| BseMI | GCAATG | 6 cut(s) | 1122, 1749, 1821, 2139, 2154, 2189 |
| BseMII | CTCAG | 8 cut(s) | 298, 702, 963, 2432, 2808, 3060, 3174, 3471 |
| BseNI | ACTGG | 4 cut(s) | 1492, 2104, 2125, 3364 |
| BseRI | GAGGAG | 5 cut(s) | 10, 1604, 1670, 1994, 2027 |
| BseSI | GKGCMC | 1 cut(s) | 554 |
| BseX3I | CGGCCG | 1 cut(s) | 24 |
| BseXI | GCAGC | 5 cut(s) | 696, 841, 1723, 1726, 2491 |
| BseYI | CCCAGC | 2 cut(s) | 1763, 2273 |
| BsgI | GTGCAG | 2 cut(s) | 487, 2490 |
| Bsh1285I | CGRYCG | 1 cut(s) | 27 |
| BshNI | GGYRCC | 1 cut(s) | 2783 |
| BsiEI | CGRYCG | 1 cut(s) | 27 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3156 |
| BsiSI | CCGG | 2 cut(s) | 152, 1332 |
| BslFI | GGGAC | 3 cut(s) | 2540, 3102, 3138 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 249, 513, 2182, 2738, 3006, 3070, 3185 |
| BsmAI | GTCTC | 1 cut(s) | 2112 |
| BsmFI | GGGAC | 3 cut(s) | 2540, 3102, 3138 |
| BsmI | GAATGC | 1 cut(s) | 2287 |
| BsoBI | CYCGRG | 1 cut(s) | 3156 |
| Bsp1286I | GDGCHC | 3 cut(s) | 315, 554, 1598 |
| Bsp19I | CCATGG | 1 cut(s) | 1306 |
| BspCNI | CTCAG | 8 cut(s) | 297, 701, 964, 2433, 2809, 3059, 3175, 3472 |
| BspHI | TCATGA | 3 cut(s) | 427, 786, 2337 |
| BspLI | GGNNCC | 4 cut(s) | 2556, 2785, 3090, 3154 |
| BspMI | ACCTGC | 2 cut(s) | 1245, 2919 |
| BspPI | GGATC | 5 cut(s) | 263, 836, 1197, 2364, 3287 |
| BspT107I | GGYRCC | 1 cut(s) | 2783 |
| BspTI | CTTAAG | 1 cut(s) | 161 |
| BsrBI | CCGCTC | 1 cut(s) | 113 |
| BsrDI | GCAATG | 6 cut(s) | 1122, 1749, 1821, 2139, 2154, 2189 |
| BsrI | ACTGG | 4 cut(s) | 1492, 2104, 2125, 3364 |
| BssECI | CCNNGG | 8 cut(s) | 21, 129, 562, 1306, 1472, 1705, 2510, 3464 |
| BssNAI | GTATAC | 1 cut(s) | 899 |
| BssNI | GRCGYC | 1 cut(s) | 264 |
| BssSI | CACGAG | 2 cut(s) | 3141, 3373 |
| BssT1I | CCWWGG | 3 cut(s) | 1306, 1472, 1705 |
| Bst1107I | GTATAC | 1 cut(s) | 899 |
| Bst2BI | CACGAG | 2 cut(s) | 3141, 3373 |
| Bst2UI | CCWGG | 3 cut(s) | 564, 2511, 2961 |
| Bst4CI | ACNGT | 8 cut(s) | 983, 997, 1281, 1353, 1367, 1619, 2290, 2878 |
| Bst6I | CTCTTC | 4 cut(s) | 832, 938, 1581, 2004 |
| BstACI | GRCGYC | 1 cut(s) | 264 |
| BstAFI | CTTAAG | 1 cut(s) | 161 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 1506, 2291, 3321 |
| BstBAI | YACGTR | 1 cut(s) | 2121 |
| BstC8I | GCNNGC | 7 cut(s) | 915, 1502, 2145, 2502, 3138, 3421, 3425 |
| BstDEI | CTNAG | 9 cut(s) | 284, 688, 972, 2062, 2441, 2817, 3046, 3183, 3480 |
| BstDSI | CCRYGG | 2 cut(s) | 129, 1306 |
| BstF5I | GGATG | 8 cut(s) | 334, 480, 1099, 1117, 1126, 1701, 2494, 3015 |
| BstHHI | GCGC | 2 cut(s) | 1758, 2399 |
| BstMAI | GTCTC | 1 cut(s) | 2112 |
| BstMCI | CGRYCG | 1 cut(s) | 27 |
| BstNI | CCWGG | 3 cut(s) | 564, 2511, 2961 |
| BstNSI | RCATGY | 3 cut(s) | 363, 1504, 3140 |
| BstSCI | CCNGG | 3 cut(s) | 562, 2509, 2959 |
| BstSFI | CTRYAG | 2 cut(s) | 1227, 2877 |
| BstSLI | GKGCMC | 1 cut(s) | 554 |
| BstSNI | TACGTA | 1 cut(s) | 2121 |
| BstV1I | GCAGC | 5 cut(s) | 696, 841, 1723, 1726, 2491 |
| BstV2I | GAAGAC | 2 cut(s) | 1457, 2331 |
| BstX2I | RGATCY | 3 cut(s) | 735, 841, 1189 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2248 |
| BstYI | RGATCY | 3 cut(s) | 735, 841, 1189 |
| BstZ17I | GTATAC | 1 cut(s) | 899 |
| BstZI | CGGCCG | 1 cut(s) | 24 |
| BsuI | GTATCC | 2 cut(s) | 563, 2220 |
| BtgI | CCRYGG | 2 cut(s) | 129, 1306 |
| BtsCI | GGATG | 8 cut(s) | 334, 480, 1099, 1117, 1126, 1701, 2494, 3015 |
| BtsI | GCAGTG | 2 cut(s) | 2406, 2950 |
| BtsIMutI | CAGTG | 6 cut(s) | 336, 1286, 1499, 2132, 2406, 2950 |
| BveI | ACCTGC | 2 cut(s) | 1245, 2919 |
| Cac8I | GCNNGC | 7 cut(s) | 915, 1502, 2145, 2502, 3138, 3421, 3425 |
| CciI | TCATGA | 3 cut(s) | 427, 786, 2337 |
| CfoI | GCGC | 2 cut(s) | 1758, 2399 |
| Cfr13I | GGNCC | 9 cut(s) | 1469, 1558, 2445, 2471, 2554, 2633, 3089, 3121, 3152 |
| CseI | GACGC | 2 cut(s) | 253, 2336 |
| CsiI | ACCWGGT | 1 cut(s) | 2959 |
| Csp6I | GTAC | 4 cut(s) | 412, 824, 1643, 2122 |
| CviQI | GTAC | 4 cut(s) | 412, 824, 1643, 2122 |
| DdeI | CTNAG | 9 cut(s) | 284, 688, 972, 2062, 2441, 2817, 3046, 3183, 3480 |
| DraI | TTTAAA | 4 cut(s) | 292, 666, 1104, 2581 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2333 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2333 |
| EaeI | YGGCCR | 4 cut(s) | 24, 87, 1162, 2219 |
| EagI | CGGCCG | 1 cut(s) | 24 |
| Eam1104I | CTCTTC | 4 cut(s) | 832, 938, 1581, 2004 |
| EarI | CTCTTC | 4 cut(s) | 832, 938, 1581, 2004 |
| EclXI | CGGCCG | 1 cut(s) | 24 |
| Eco105I | TACGTA | 1 cut(s) | 2121 |
| Eco130I | CCWWGG | 3 cut(s) | 1306, 1472, 1705 |
| Eco24I | GRGCYC | 2 cut(s) | 315, 1598 |
| Eco47I | GGWCC | 6 cut(s) | 1469, 2471, 2554, 3089, 3121, 3152 |
| Eco52I | CGGCCG | 1 cut(s) | 24 |
| Eco57I | CTGAAG | 1 cut(s) | 1233 |
| Eco88I | CYCGRG | 1 cut(s) | 3156 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2554 |
| EcoRI | GAATTC | 1 cut(s) | 101 |
| EcoRII | CCWGG | 3 cut(s) | 562, 2509, 2959 |
| EcoT14I | CCWWGG | 3 cut(s) | 1306, 1472, 1705 |
| EcoT22I | ATGCAT | 3 cut(s) | 673, 1061, 3138 |
| EcoT38I | GRGCYC | 2 cut(s) | 315, 1598 |
| ErhI | CCWWGG | 3 cut(s) | 1306, 1472, 1705 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2655, 2687 |
| FaqI | GGGAC | 3 cut(s) | 2540, 3102, 3138 |
| FauI | CCCGC | 1 cut(s) | 2472 |
| FauNDI | CATATG | 4 cut(s) | 1422, 1899, 2382, 3117 |
| FbaI | TGATCA | 2 cut(s) | 430, 811 |
| FblI | GTMKAC | 2 cut(s) | 898, 1230 |
| Fnu4HI | GCNGC | 8 cut(s) | 111, 364, 685, 855, 1439, 1737, 1740, 2505 |
| FokI | GGATG | 8 cut(s) | 341, 487, 1106, 1124, 1133, 1688, 2501, 3022 |
| FriOI | GRGCYC | 2 cut(s) | 315, 1598 |
| Fsp4HI | GCNGC | 8 cut(s) | 111, 364, 685, 855, 1439, 1737, 1740, 2505 |
| FspI | TGCGCA | 2 cut(s) | 1757, 2398 |
| GlaI | GCGC | 2 cut(s) | 1757, 2398 |
| GluI | GCNGC | 8 cut(s) | 111, 364, 685, 855, 1439, 1737, 1740, 2505 |
| GsaI | CCCAGC | 2 cut(s) | 1767, 2277 |
| GsuI | CTGGAG | 4 cut(s) | 585, 1506, 1925, 1938 |
| HapII | CCGG | 2 cut(s) | 152, 1332 |
| HgaI | GACGC | 2 cut(s) | 253, 2336 |
| HhaI | GCGC | 2 cut(s) | 1758, 2399 |
| Hin1I | GRCGYC | 1 cut(s) | 264 |
| Hin6I | GCGC | 2 cut(s) | 1756, 2397 |
| HinP1I | GCGC | 2 cut(s) | 1756, 2397 |
| HindIII | AAGCTT | 2 cut(s) | 915, 3407 |
| HpaII | CCGG | 2 cut(s) | 152, 1332 |
| HphI | GGTGA | 8 cut(s) | 178, 320, 557, 952, 1541, 2087, 2753, 2966 |
| Hpy166II | GTNNAC | 7 cut(s) | 214, 899, 1231, 1469, 1532, 1819, 2957 |
| Hpy8I | GTNNAC | 7 cut(s) | 214, 899, 1231, 1469, 1532, 1819, 2957 |
| Hpy99I | CGWCG | 1 cut(s) | 269 |
| HpyCH4III | ACNGT | 8 cut(s) | 983, 997, 1281, 1353, 1367, 1619, 2290, 2878 |
| HpyCH4IV | ACGT | 2 cut(s) | 380, 2120 |
| HpyF3I | CTNAG | 9 cut(s) | 284, 688, 972, 2062, 2441, 2817, 3046, 3183, 3480 |
| HpySE526I | ACGT | 2 cut(s) | 380, 2120 |
| Hsp92I | GRCGYC | 1 cut(s) | 264 |
| HspAI | GCGC | 2 cut(s) | 1756, 2397 |
| Ksp22I | TGATCA | 2 cut(s) | 430, 811 |
| LmnI | GCTCC | 8 cut(s) | 118, 355, 394, 503, 1657, 2178, 2270, 3226 |
| Lsp1109I | GCAGC | 5 cut(s) | 696, 841, 1723, 1726, 2491 |
| LweI | GCATC | 6 cut(s) | 465, 680, 735, 1084, 1102, 2357 |
| MabI | ACCWGGT | 1 cut(s) | 2959 |
| MaeII | ACGT | 2 cut(s) | 380, 2120 |
| MaeIII | GTNAC | 4 cut(s) | 334, 676, 1573, 2563 |
| MbiI | CCGCTC | 1 cut(s) | 113 |
| MflI | RGATCY | 3 cut(s) | 735, 841, 1189 |
| MhlI | GDGCHC | 3 cut(s) | 315, 554, 1598 |
| MlsI | TGGCCA | 1 cut(s) | 1164 |
| MluNI | TGGCCA | 1 cut(s) | 1164 |
| MlyI | GAGTC | 6 cut(s) | 11, 188, 1561, 1929, 2180, 3168 |
| MmeI | TCCRAC | 1 cut(s) | 814 |
| Mox20I | TGGCCA | 1 cut(s) | 1164 |
| Mph1103I | ATGCAT | 3 cut(s) | 673, 1061, 3138 |
| MroXI | GAANNNNTTC | 2 cut(s) | 947, 3367 |
| MscI | TGGCCA | 1 cut(s) | 1164 |
| MslI | CAYNNNNRTG | 1 cut(s) | 644 |
| Msp20I | TGGCCA | 1 cut(s) | 1164 |
| MspCI | CTTAAG | 1 cut(s) | 161 |
| MspI | CCGG | 2 cut(s) | 152, 1332 |
| MspR9I | CCNGG | 3 cut(s) | 564, 2511, 2961 |
| Mva1269I | GAATGC | 1 cut(s) | 2287 |
| MvaI | CCWGG | 3 cut(s) | 564, 2511, 2961 |
| NcoI | CCATGG | 1 cut(s) | 1306 |
| NdeI | CATATG | 4 cut(s) | 1422, 1899, 2382, 3117 |
| NlaIV | GGNNCC | 4 cut(s) | 2556, 2785, 3090, 3154 |
| NmuCI | GTSAC | 3 cut(s) | 334, 1573, 2563 |
| NsbI | TGCGCA | 2 cut(s) | 1757, 2398 |
| NsiI | ATGCAT | 3 cut(s) | 673, 1061, 3138 |
| NspI | RCATGY | 3 cut(s) | 363, 1504, 3140 |
| PaeI | GCATGC | 2 cut(s) | 1504, 3140 |
| PagI | TCATGA | 3 cut(s) | 427, 786, 2337 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1846 |
| PctI | GAATGC | 1 cut(s) | 2287 |
| PdmI | GAANNNNTTC | 2 cut(s) | 947, 3367 |
| PfeI | GAWTC | 9 cut(s) | 222, 524, 769, 1431, 2404, 2465, 2645, 2848, 3433 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 2182, 2738 |
| PkrI | GCNGC | 8 cut(s) | 112, 365, 686, 856, 1440, 1738, 1741, 2506 |
| PleI | GAGTC | 6 cut(s) | 11, 188, 1561, 1928, 2180, 3167 |
| PpsI | GAGTC | 6 cut(s) | 11, 188, 1561, 1928, 2180, 3167 |
| Ppu21I | YACGTR | 1 cut(s) | 2121 |
| PpuMI | RGGWCCY | 1 cut(s) | 2554 |
| PshBI | ATTAAT | 1 cut(s) | 1169 |
| Psp5II | RGGWCCY | 1 cut(s) | 2554 |
| Psp6I | CCWGG | 3 cut(s) | 562, 2509, 2959 |
| PspFI | CCCAGC | 2 cut(s) | 1763, 2273 |
| PspGI | CCWGG | 3 cut(s) | 562, 2509, 2959 |
| PspN4I | GGNNCC | 4 cut(s) | 2556, 2785, 3090, 3154 |
| PspPI | GGNCC | 9 cut(s) | 1469, 1558, 2445, 2471, 2554, 2633, 3089, 3121, 3152 |
| PspPPI | RGGWCCY | 1 cut(s) | 2554 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 981, 1013, 1312, 1344 |
| PsuI | RGATCY | 3 cut(s) | 735, 841, 1189 |
| RsaI | GTAC | 4 cut(s) | 413, 825, 1644, 2123 |
| RsaNI | GTAC | 4 cut(s) | 412, 824, 1643, 2122 |
| RseI | CAYNNNNRTG | 1 cut(s) | 644 |
| SatI | GCNGC | 8 cut(s) | 111, 364, 685, 855, 1439, 1737, 1740, 2505 |
| Sau96I | GGNCC | 9 cut(s) | 1469, 1558, 2445, 2471, 2554, 2633, 3089, 3121, 3152 |
| ScaI | AGTACT | 1 cut(s) | 1644 |
| SchI | GAGTC | 6 cut(s) | 11, 188, 1561, 1929, 2180, 3168 |
| ScrFI | CCNGG | 3 cut(s) | 564, 2511, 2961 |
| SduI | GDGCHC | 3 cut(s) | 315, 554, 1598 |
| SexAI | ACCWGGT | 1 cut(s) | 2959 |
| SfaNI | GCATC | 6 cut(s) | 465, 680, 735, 1084, 1102, 2357 |
| SfcI | CTRYAG | 2 cut(s) | 1227, 2877 |
| SinI | GGWCC | 6 cut(s) | 1469, 2471, 2554, 3089, 3121, 3152 |
| SmiI | ATTTAAAT | 2 cut(s) | 666, 2581 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 644 |
| SmlI | CTYRAG | 2 cut(s) | 161, 2637 |
| SmoI | CTYRAG | 2 cut(s) | 161, 2637 |
| SnaBI | TACGTA | 1 cut(s) | 2121 |
| SphI | GCATGC | 2 cut(s) | 1504, 3140 |
| SspI | AATATT | 2 cut(s) | 2158, 3394 |
| StyD4I | CCNGG | 3 cut(s) | 562, 2509, 2959 |
| StyI | CCWWGG | 3 cut(s) | 1306, 1472, 1705 |
| SwaI | ATTTAAAT | 2 cut(s) | 666, 2581 |
| TaaI | ACNGT | 8 cut(s) | 983, 997, 1281, 1353, 1367, 1619, 2290, 2878 |
| TaiI | ACGT | 2 cut(s) | 383, 2123 |
| TatI | WGTACW | 3 cut(s) | 411, 823, 1642 |
| TauI | GCSGC | 3 cut(s) | 113, 366, 1441 |
| TfiI | GAWTC | 9 cut(s) | 222, 524, 769, 1431, 2404, 2465, 2645, 2848, 3433 |
| TscAI | CASTG | 6 cut(s) | 343, 1286, 1499, 2132, 2406, 2950 |
| TseFI | GTSAC | 3 cut(s) | 334, 1573, 2563 |
| TseI | GCWGC | 5 cut(s) | 684, 854, 1736, 1739, 2504 |
| Tsp45I | GTSAC | 3 cut(s) | 334, 1573, 2563 |
| TspGWI | ACGGA | 5 cut(s) | 146, 505, 1471, 1710, 2039 |
| TspRI | CASTG | 6 cut(s) | 343, 1286, 1499, 2132, 2406, 2950 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 2182, 2738 |
| Vha464I | CTTAAG | 1 cut(s) | 161 |
| VpaK11BI | GGWCC | 6 cut(s) | 1469, 2471, 2554, 3089, 3121, 3152 |
| VspI | ATTAAT | 1 cut(s) | 1169 |
| XapI | RAATTY | 6 cut(s) | 75, 101, 137, 661, 2705, 3363 |
| XceI | RCATGY | 3 cut(s) | 363, 1504, 3140 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2248 |
| XmaJI | CCTAGG | 1 cut(s) | 1472 |
| XmiI | GTMKAC | 2 cut(s) | 898, 1230 |
| XmnI | GAANNNNTTC | 2 cut(s) | 947, 3367 |
| ZrmI | AGTACT | 1 cut(s) | 1644 |
| Zsp2I | ATGCAT | 3 cut(s) | 673, 1061, 3138 |